View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6429_low_14 (Length: 366)
Name: NF6429_low_14
Description: NF6429
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6429_low_14 |
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Alignment Details
Target: chr1 (Bit Score: 330; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 10 - 347
Target Start/End: Original strand, 22384373 - 22384710
Alignment:
| Q |
10 |
aagaatatacagacttcactcaacaatgcagggttggaatcaaaggtcaaagtaactgttccatttaatgctgacatttattattcaccagactcaaatc |
109 |
Q |
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| T |
22384373 |
aagaatatacagacttcactcaacaatgcagggttggaatcaaaggtcaaagtaactgttccatttaatgctgacatttactattcaccagactcaaatc |
22384472 |
T |
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| Q |
110 |
cagtgccatctgcaggtgacttcagacctgaattaagagacatcactattgaaataatccagtttctatattcaaccaactcaacttttacggttaatat |
209 |
Q |
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| T |
22384473 |
cagtgccatctgcaggtgacttcagacctgaattaagagacatcactattgaaatagtccagtttctatattcaaccaactcaacttttacggttaatat |
22384572 |
T |
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| Q |
210 |
ctaccctttccttagcctttactatggacaagataatttcccgtttgattttgcattttttgatggaaagaatgaaccacttcgagacggaaaagcagtt |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22384573 |
ctaccctttccttagcctttactatggacaagataatttcccgtttgattttgcattttttgatggaaagaatgaaccacttcgagacggaaaagcagtt |
22384672 |
T |
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| Q |
310 |
tacaacaatgtgtttgatgcaaatctggatacccttat |
347 |
Q |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
22384673 |
tacaacaatgtgtttgatgcaaatctggatacccttat |
22384710 |
T |
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