View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6429_low_16 (Length: 360)
Name: NF6429_low_16
Description: NF6429
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6429_low_16 |
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Alignment Details
Target: chr3 (Bit Score: 329; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 1 - 345
Target Start/End: Original strand, 10794989 - 10795333
Alignment:
| Q |
1 |
tgctgaaattatagacaaagtgcacaaggagataaaccctatgtccactttcttgattgtttgcagaacgttgaagttcaccatatgcaaggaccaagag |
100 |
Q |
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| T |
10794989 |
tgctgaaattatagacaaagtgcacaaggagataaaccctatgtccactttcttgattgtttgcagaacgttgaagttcaccatatgcaaggatcaagag |
10795088 |
T |
|
| Q |
101 |
taagtttggcgaaatcatagaattttaaagaatgtatgaaaatgttagaacaagctgaaaggatagctttgtaaagaaggtaaattgcgtgtttaccagt |
200 |
Q |
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| T |
10795089 |
caagtttggcgaaatcatagaattttaaagaatgtatgaaaatgttagaacaagctgaaaggatagctttgttaagaaggtaaattgcgtttttaccagt |
10795188 |
T |
|
| Q |
201 |
gaagcaccggttccaactacgaacagctttgccccgttacgctgcataagagatggagatgaccttcacttataaggatataattatttgacttggttta |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10795189 |
gaagcaccggttccaactacgaacagctttgccccgttacgctgcataagagatggagatgaccttcacttataaggatataattatttgacttggttta |
10795288 |
T |
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| Q |
301 |
aatgatccaacacataccactatagcacctattctttgtagaagt |
345 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10795289 |
aatgatccaacacataccactatagcacctattctttgtagaagt |
10795333 |
T |
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