View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6429_low_18 (Length: 355)
Name: NF6429_low_18
Description: NF6429
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6429_low_18 |
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Alignment Details
Target: chr4 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 22 - 295
Target Start/End: Original strand, 1418146 - 1418419
Alignment:
| Q |
22 |
gtatccatagtagtctttactgatgaataatttcttgtagaaatacagctaaagttggacaaataaaattgaattcttttcttcaaattagattttccgc |
121 |
Q |
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| T |
1418146 |
gtatccatagtagtctttactgatgaataatttcttgtagaaatacagctaaagttggacaaataaagttgaattcttttcttcaaattagattttccgc |
1418245 |
T |
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| Q |
122 |
atttgcaataacccacttatttgagtaaaattaatgtgttcatattaatcaaaatttaattagtttggcact-tgattaattttacttcagctagaaaat |
220 |
Q |
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| T |
1418246 |
atatgcaataacccacttatttgagtaaaattaatgtgttcatattaatcaaaatttaattagtttggcactatgattaattttacttcagctagaaaat |
1418345 |
T |
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| Q |
221 |
atcnnnnnnnnngaaagaagaaaatatcatttttaaatgttcacctcattgtcttgagtttgatttacaaaatgg |
295 |
Q |
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| T |
1418346 |
atcatttttttt-aaagaagaaaatatcatttttaaatgttcacgtctttgtcttgagtttggtttacaaaatgg |
1418419 |
T |
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