View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6429_low_19 (Length: 347)
Name: NF6429_low_19
Description: NF6429
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6429_low_19 |
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Alignment Details
Target: chr5 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 15 - 290
Target Start/End: Original strand, 5511355 - 5511637
Alignment:
| Q |
15 |
tatttctcgaatccatatcatatttgacatccacacgacactgacataaatgatcacattgtattatgtcatctttttaaattattatcgttgttgatgt |
114 |
Q |
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| T |
5511355 |
tatttctcgaatccatatcatatttgatatccacacgacactgacataaatgatcacattgtattatgtcatctttttaaattattattgttgttgatgt |
5511454 |
T |
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| Q |
115 |
gtgtgtctgtgtttga------------tatattttctctaagattaaagcctaagttaagataaaattttatgagtaataattttcacattgcttattc |
202 |
Q |
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| T |
5511455 |
gtgtatctgtgtttgagtttatgcttcatatattttctctaacattaaagcctaag-----ataaaattttatcagtaataattttcatattacttattc |
5511549 |
T |
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| Q |
203 |
tatgtatggtcatgcgagtgttatgctcaatgcagttgtggaactgtgatttgttgataacacggttagaggcacccaatgcacctcg |
290 |
Q |
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| T |
5511550 |
tatgtatggtcatgctagtgctatgctcaatgcagttgtggaacggtgatttgttgataacacggttagaggcacccaatgcacctcg |
5511637 |
T |
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Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 50 - 104
Target Start/End: Complemental strand, 31026754 - 31026700
Alignment:
| Q |
50 |
cgacactgacataaatgatcacattgtattatgtcatctttttaaattattatcg |
104 |
Q |
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| T |
31026754 |
cgacaccgacatatatgattacattgaattatgtcattttcttaaattattatcg |
31026700 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 50 - 111
Target Start/End: Complemental strand, 18571031 - 18570970
Alignment:
| Q |
50 |
cgacactgacataaatgatcacattgtattatgtcatctttttaaattattatcgttgttga |
111 |
Q |
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| T |
18571031 |
cgacactgacacatatgattacattgaattatgtcattttctcaaattattatcggtgttga |
18570970 |
T |
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