View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6429_low_20 (Length: 342)
Name: NF6429_low_20
Description: NF6429
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6429_low_20 |
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Alignment Details
Target: chr5 (Bit Score: 298; Significance: 1e-167; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 15 - 324
Target Start/End: Complemental strand, 38327033 - 38326724
Alignment:
| Q |
15 |
tcataaacttcagcagttacaaattagttattttttcaataattatctttaacaagtataactgaaaacctttcaataattacattaatgtattttagac |
114 |
Q |
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| T |
38327033 |
tcataaacttcagcagttacaaattagttattttttcaataattatctttaacaagtataactgaaaacctttcaataattacattaatttattttagac |
38326934 |
T |
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| Q |
115 |
tatatactggactgttacaaaatgttacttattatttcctgaatttaaaaatagggcaaccattgctactacataaacaaccttattgcatgtctctaac |
214 |
Q |
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| T |
38326933 |
tatatactggactgttacaaaatgttacttattatttcctgaatttaaaaatggggcaaccattgctactacataaacaaccttattgcatgtctctaac |
38326834 |
T |
|
| Q |
215 |
taaactgagcacaagagtttgtaaaatgagaaatgaaactacagttaaatacaatagaaggttacaaaacattaacattgcaacaagattatcatattaa |
314 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38326833 |
taaactgagcacaagagtttgtaaaatgagaaatgaaactacacttaaatacaatagaaggttacaaaacattaacattgcaacaagattatcatattaa |
38326734 |
T |
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| Q |
315 |
aagttctata |
324 |
Q |
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|||||||||| |
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| T |
38326733 |
aagttctata |
38326724 |
T |
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