View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6429_low_22 (Length: 330)
Name: NF6429_low_22
Description: NF6429
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6429_low_22 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 268; Significance: 1e-149; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 11 - 326
Target Start/End: Original strand, 17774911 - 17775226
Alignment:
| Q |
11 |
cacagaagaaggtccacgtaccatcaactccttacaacgaatagcagcaagcttaacgactctttcgagctccacattccaactcaaacacagtgaatga |
110 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
17774911 |
cacagaagaaggaccacgtaccatcaactccttacaacgaataacatcaagcttaacgactctttcgagctccacattccaactcaaacatagtgaatga |
17775010 |
T |
|
| Q |
111 |
aatcacattgagtacatgaccatttctagccatacagtctcaattcaatcgtgaagcatcgaaacaaattaaagcacaaccacaaattattcaaaagaag |
210 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
17775011 |
aatcacattgagtacataaccatttctagccatacagtctcaattcaatcatgaagcattgaaacaaattaaagcacaaccccaaattattcaaaagaag |
17775110 |
T |
|
| Q |
211 |
tgtctgagtacaaattggatttgaaactggatctgtaacacgaaactggatccgatggatctcactcaaaagggtttgagagagctatggtgaacccaaa |
310 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17775111 |
tgttggagtacaaattggatttgaaactggatctgtaacacgaaaccggatccgatggatctcactcaaaagggtttgagagagctatggtgaacccaaa |
17775210 |
T |
|
| Q |
311 |
agaacaccgtttgtgc |
326 |
Q |
| |
|
|||||||| ||||||| |
|
|
| T |
17775211 |
agaacaccatttgtgc |
17775226 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 50 - 110
Target Start/End: Original strand, 25125491 - 25125551
Alignment:
| Q |
50 |
aatagcagcaagcttaacgactctttcgagctccacattccaactcaaacacagtgaatga |
110 |
Q |
| |
|
||||||| ||||||||||||| ||||||||| ||||| ||||| |||||| ||||||||| |
|
|
| T |
25125491 |
aatagcaacaagcttaacgaccctttcgagccccacaatccaaaccaaacaaagtgaatga |
25125551 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 28 - 110
Target Start/End: Original strand, 2900649 - 2900730
Alignment:
| Q |
28 |
gtaccatcaactccttacaacgaatagcagcaagcttaacgactctttcgagctccacattccaactcaaacacagtgaatga |
110 |
Q |
| |
|
|||||||||||||| |||||| ||| |||||||||| |||||| |||||||| |||| ||||| |||||| ||||||||| |
|
|
| T |
2900649 |
gtaccatcaactccctacaac-aatggcagcaagctaaacgaccatttcgagcctcacagtccaaatcaaacgaagtgaatga |
2900730 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 28 - 109
Target Start/End: Complemental strand, 33440414 - 33440334
Alignment:
| Q |
28 |
gtaccatcaactccttacaacgaatagcagcaagcttaacgactctttcgagctccacattccaactcaaacacagtgaatg |
109 |
Q |
| |
|
||||| |||||||| |||||| |||||||||||| | |||||| ||||||||| |||| ||||| ||| ||| |||||||| |
|
|
| T |
33440414 |
gtaccttcaactccctacaac-aatagcagcaagttaaacgaccctttcgagccgcacaatccaaatcacacaaagtgaatg |
33440334 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University