View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6429_low_23 (Length: 329)

Name: NF6429_low_23
Description: NF6429
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6429_low_23
NF6429_low_23
[»] chr4 (7 HSPs)
chr4 (1-318)||(41520674-41520992)
chr4 (1-45)||(8415518-8415562)
chr4 (1-36)||(44221450-44221485)
chr4 (1-36)||(51465340-51465375)
chr4 (1-46)||(27537741-27537786)
chr4 (1-45)||(11949786-11949830)
chr4 (1-45)||(43034365-43034409)
[»] chr8 (4 HSPs)
chr8 (1-43)||(37141353-37141395)
chr8 (1-36)||(10601766-10601801)
chr8 (1-47)||(13357464-13357510)
chr8 (1-45)||(15020755-15020799)
[»] chr3 (4 HSPs)
chr3 (1-46)||(2153524-2153569)
chr3 (1-46)||(29631179-29631224)
chr3 (1-34)||(34326006-34326039)
chr3 (1-33)||(28093360-28093392)
[»] chr5 (3 HSPs)
chr5 (2-45)||(16089444-16089487)
chr5 (1-36)||(42515810-42515845)
chr5 (1-45)||(42505866-42505910)
[»] chr1 (5 HSPs)
chr1 (1-36)||(30003204-30003239)
chr1 (1-46)||(25532966-25533011)
chr1 (3-36)||(28053266-28053299)
chr1 (1-45)||(1408429-1408473)
chr1 (5-45)||(24529679-24529719)
[»] chr6 (3 HSPs)
chr6 (1-47)||(2726440-2726486)
chr6 (1-45)||(31971523-31971567)
chr6 (4-40)||(32620103-32620139)
[»] chr2 (3 HSPs)
chr2 (1-47)||(2256963-2257009)
chr2 (1-46)||(9547432-9547477)
chr2 (1-45)||(34977198-34977242)
[»] chr7 (3 HSPs)
chr7 (1-46)||(47342457-47342502)
chr7 (1-41)||(39043753-39043793)
chr7 (1-45)||(40187659-40187703)


Alignment Details
Target: chr4 (Bit Score: 263; Significance: 1e-146; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 1 - 318
Target Start/End: Complemental strand, 41520992 - 41520674
Alignment:
Q  1 tatattatgcaatgtccataccaactgaattaagcttatgaggactgtcaaattatctttataacacaatagcaaattttatgtctatcaaacgtttatc 100  Q
    ||||||||||| ||||  |||||||||| |||||||||||||||| || |||| ||||||||||||||||| |||||||||||||||| || ||||||||    
T  41520992 tatattatgcattgtctctaccaactgagttaagcttatgaggacggttaaatgatctttataacacaataacaaattttatgtctattaatcgtttatc 41520893  T
Q  101 atatatttaaaagatttgattatgcatcgatcaaccgtgttagcatatactgatttttgttttatatggctataatttcaaaccaagttatgactttttg 200  Q
    |||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41520892 atatatttaaaagatttgattatgtattgatcaaccgtgttagcatatactgatttttgttttatatggctataatttcaaaccaagttatgactttttg 41520793  T
Q  201 tcaaaaactaatcaagtcacattgtattattaaatccataactgtaagtaccgtactatcaattatttttaacttctatttgttaatatatctctatggt 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41520792 tcaaaaactaatcaagtcacattgtattattaaatccataactgtaagtaccgtactatcaattatttttaacttctatttgttaatatatctctatggt 41520693  T
Q  301 ctc-tttcttttcattcat 318  Q
    ||| |||||||||||||||    
T  41520692 ctcttttcttttcattcat 41520674  T

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Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 8415518 - 8415562
Alignment:
Q  1 tatattatgcaatgtccataccaactgaattaagcttatgaggac 45  Q
    ||||||||||| |||||||||||||||||||||||| ||||||||    
T  8415518 tatattatgcattgtccataccaactgaattaagctcatgaggac 8415562  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 44221485 - 44221450
Alignment:
Q  1 tatattatgcaatgtccataccaactgaattaagct 36  Q
    ||||||||||| ||||||||||||||||||||||||    
T  44221485 tatattatgcattgtccataccaactgaattaagct 44221450  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 51465375 - 51465340
Alignment:
Q  1 tatattatgcaatgtccataccaactgaattaagct 36  Q
    ||||||||||| ||||||||||||||||||||||||    
T  51465375 tatattatgcattgtccataccaactgaattaagct 51465340  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 27537786 - 27537741
Alignment:
Q  1 tatattatgcaatgtccataccaactgaattaagcttatgaggact 46  Q
    ||||||||||| |||||||||||| ||| ||||||| |||||||||    
T  27537786 tatattatgcattgtccataccaattgagttaagctcatgaggact 27537741  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 11949786 - 11949830
Alignment:
Q  1 tatattatgcaatgtccataccaactgaattaagcttatgaggac 45  Q
    ||||||||||| ||||||||||||||||  |||||| ||||||||    
T  11949786 tatattatgcattgtccataccaactgagctaagctcatgaggac 11949830  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 43034365 - 43034409
Alignment:
Q  1 tatattatgcaatgtccataccaactgaattaagcttatgaggac 45  Q
    ||||||||||| |||||||||||||||| ||||||| | ||||||    
T  43034365 tatattatgcattgtccataccaactgagttaagctcacgaggac 43034409  T

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Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 37141395 - 37141353
Alignment:
Q  1 tatattatgcaatgtccataccaactgaattaagcttatgagg 43  Q
    ||||||||||| |||||||||||||||||||||| ||||||||    
T  37141395 tatattatgcattgtccataccaactgaattaagtttatgagg 37141353  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 10601801 - 10601766
Alignment:
Q  1 tatattatgcaatgtccataccaactgaattaagct 36  Q
    ||||||||||| ||||||||||||||||||||||||    
T  10601801 tatattatgcattgtccataccaactgaattaagct 10601766  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 13357464 - 13357510
Alignment:
Q  1 tatattatgcaatgtccataccaactgaattaagcttatgaggactg 47  Q
    ||||||||||| |||||||||||||||| ||||||| | ||||||||    
T  13357464 tatattatgcattgtccataccaactgagttaagctcacgaggactg 13357510  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 15020799 - 15020755
Alignment:
Q  1 tatattatgcaatgtccataccaactgaattaagcttatgaggac 45  Q
    |||||||| || |||||||||||||||||||||||| | ||||||    
T  15020799 tatattatacattgtccataccaactgaattaagctaacgaggac 15020755  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000005; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 2153524 - 2153569
Alignment:
Q  1 tatattatgcaatgtccataccaactgaattaagcttatgaggact 46  Q
    ||||||||||| |||||| ||||||||||||||||||| |||||||    
T  2153524 tatattatgcattgtccaaaccaactgaattaagcttaggaggact 2153569  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 29631224 - 29631179
Alignment:
Q  1 tatattatgcaatgtccataccaactgaattaagcttatgaggact 46  Q
    ||||||||||| ||||||||||||||||  |||||| |||||||||    
T  29631224 tatattatgcattgtccataccaactgagctaagctcatgaggact 29631179  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 34326006 - 34326039
Alignment:
Q  1 tatattatgcaatgtccataccaactgaattaag 34  Q
    ||||||||||| ||||||||||||||||||||||    
T  34326006 tatattatgcattgtccataccaactgaattaag 34326039  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 28093392 - 28093360
Alignment:
Q  1 tatattatgcaatgtccataccaactgaattaa 33  Q
    ||||||||||| |||||||||||||||||||||    
T  28093392 tatattatgcattgtccataccaactgaattaa 28093360  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000007; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 2 - 45
Target Start/End: Complemental strand, 16089487 - 16089444
Alignment:
Q  2 atattatgcaatgtccataccaactgaattaagcttatgaggac 45  Q
    |||||||||| ||||||||||||||||| |||||||| ||||||    
T  16089487 atattatgcattgtccataccaactgaactaagcttacgaggac 16089444  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 42515845 - 42515810
Alignment:
Q  1 tatattatgcaatgtccataccaactgaattaagct 36  Q
    ||||||||||| ||||||||||||||||||||||||    
T  42515845 tatattatgcattgtccataccaactgaattaagct 42515810  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 42505910 - 42505866
Alignment:
Q  1 tatattatgcaatgtccataccaactgaattaagcttatgaggac 45  Q
    ||||||||||| ||||||||||||||||  |||||||| ||||||    
T  42505910 tatattatgcattgtccataccaactgagctaagcttacgaggac 42505866  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000007; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 30003239 - 30003204
Alignment:
Q  1 tatattatgcaatgtccataccaactgaattaagct 36  Q
    ||||||||||| ||||||||||||||||||||||||    
T  30003239 tatattatgcattgtccataccaactgaattaagct 30003204  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 25533011 - 25532966
Alignment:
Q  1 tatattatgcaatgtccataccaactgaattaagcttatgaggact 46  Q
    ||||||||||| ||||||||||||||||| |||||| | |||||||    
T  25533011 tatattatgcattgtccataccaactgaactaagctcacgaggact 25532966  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 36
Target Start/End: Original strand, 28053266 - 28053299
Alignment:
Q  3 tattatgcaatgtccataccaactgaattaagct 36  Q
    ||||||||| ||||||||||||||||||||||||    
T  28053266 tattatgcattgtccataccaactgaattaagct 28053299  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 1408473 - 1408429
Alignment:
Q  1 tatattatgcaatgtccataccaactgaattaagcttatgaggac 45  Q
    ||||||||||| ||||| |||||||||| ||||||||||| ||||    
T  1408473 tatattatgcattgtccttaccaactgagttaagcttatggggac 1408429  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 45
Target Start/End: Complemental strand, 24529719 - 24529679
Alignment:
Q  5 ttatgcaatgtccataccaactgaattaagcttatgaggac 45  Q
    ||||||||||||||||| |||||| ||||||| ||||||||    
T  24529719 ttatgcaatgtccatactaactgagttaagctcatgaggac 24529679  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 2726440 - 2726486
Alignment:
Q  1 tatattatgcaatgtccataccaactgaattaagcttatgaggactg 47  Q
    ||||||||||| |||||||||||||||| ||||| ||| ||||||||    
T  2726440 tatattatgcattgtccataccaactgagttaagtttacgaggactg 2726486  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 31971567 - 31971523
Alignment:
Q  1 tatattatgcaatgtccataccaactgaattaagcttatgaggac 45  Q
    ||||||||||| ||||| |||||||||| ||||||||| ||||||    
T  31971567 tatattatgcattgtccttaccaactgagttaagcttacgaggac 31971523  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 4 - 40
Target Start/End: Original strand, 32620103 - 32620139
Alignment:
Q  4 attatgcaatgtccataccaactgaattaagcttatg 40  Q
    ||||||||||||||||| ||||||| |||||||||||    
T  32620103 attatgcaatgtccatatcaactgagttaagcttatg 32620139  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 2257009 - 2256963
Alignment:
Q  1 tatattatgcaatgtccataccaactgaattaagcttatgaggactg 47  Q
    ||||||||||| |||||||||||||||| ||||||| | ||||||||    
T  2257009 tatattatgcattgtccataccaactgagttaagctcacgaggactg 2256963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 9547432 - 9547477
Alignment:
Q  1 tatattatgcaatgtccataccaactgaattaagcttatgaggact 46  Q
    ||||||||||| |||||||| ||||||| |||||||||||| ||||    
T  9547432 tatattatgcattgtccatatcaactgagttaagcttatgatgact 9547477  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 34977242 - 34977198
Alignment:
Q  1 tatattatgcaatgtccataccaactgaattaagcttatgaggac 45  Q
    ||||||||||| |||||||||||||||| ||||||| | ||||||    
T  34977242 tatattatgcattgtccataccaactgagttaagctcacgaggac 34977198  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 47342457 - 47342502
Alignment:
Q  1 tatattatgcaatgtccataccaactgaattaagcttatgaggact 46  Q
    ||||||||||| |||||| ||||||||| ||||||| |||||||||    
T  47342457 tatattatgcattgtccaaaccaactgagttaagctcatgaggact 47342502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 39043793 - 39043753
Alignment:
Q  1 tatattatgcaatgtccataccaactgaattaagcttatga 41  Q
    ||||||||||| |||||||||||||||| ||||||| ||||    
T  39043793 tatattatgcattgtccataccaactgagttaagctcatga 39043753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 40187659 - 40187703
Alignment:
Q  1 tatattatgcaatgtccataccaactgaattaagcttatgaggac 45  Q
    ||||||||||| ||||| |||||||||| ||||||| ||||||||    
T  40187659 tatattatgcattgtccctaccaactgagttaagctcatgaggac 40187703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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