View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6429_low_26 (Length: 304)

Name: NF6429_low_26
Description: NF6429
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6429_low_26
NF6429_low_26
[»] chr4 (1 HSPs)
chr4 (18-304)||(23680022-23680309)


Alignment Details
Target: chr4 (Bit Score: 258; Significance: 1e-144; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 258; E-Value: 1e-144
Query Start/End: Original strand, 18 - 304
Target Start/End: Complemental strand, 23680309 - 23680022
Alignment:
Q  18 gagcaggagcagcatgaagttccgacacagactgaacttcaagctcagaatgatgatatccatccacctttgatcattaacctcgatattgacacctaaa 117  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  23680309 gagcaggagcagcatgaagttccgacacaaactgaacttcaagctcagaacgatgatatccatccacctttgatcattaacctcgatattgacacctaaa 23680210  T
Q  118 tgttttgtttat--atatgtgtattttgtttctttaaatgtgttgaaagaggcatcggttcggaagaaaaggtggaagatcaccttcctgcaccaagtta 215  Q
     |||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23680209 agttttgtttatatatatgtgtattttgtttctttaaatgtgttgaaagaggcatcggttcggaagaaaaggtggaagatcaccttcctgcaccaagtta 23680110  T
Q  216 ttcgtttgtttgtttgtgttatatacaaagacaaaatgcaaaatgccatttgaaatgggaacagatcgaagaaaatgagaatagtgtgc 304  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23680109 ttcg-ttgtttgtttgtgttatatacaaagacaaaatgcaaaatgccatttgaaatgggaacagatcgaagaaaatgagaatagtgtgc 23680022  T

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