View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6429_low_28 (Length: 277)

Name: NF6429_low_28
Description: NF6429
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6429_low_28
NF6429_low_28
[»] chr4 (2 HSPs)
chr4 (1-241)||(41520991-41521228)
chr4 (1-41)||(25783188-25783228)
[»] chr5 (1 HSPs)
chr5 (1-41)||(25988806-25988846)
[»] chr8 (1 HSPs)
chr8 (17-46)||(24203261-24203290)
[»] chr7 (2 HSPs)
chr7 (1-41)||(18023716-18023756)
chr7 (1-41)||(21554918-21554958)
[»] chr6 (1 HSPs)
chr6 (1-41)||(5267061-5267101)
[»] chr3 (3 HSPs)
chr3 (1-41)||(8136616-8136656)
chr3 (1-37)||(40520789-40520825)
chr3 (1-41)||(50459713-50459753)
[»] chr2 (2 HSPs)
chr2 (1-41)||(4138028-4138068)
chr2 (1-41)||(16082170-16082210)
[»] chr1 (1 HSPs)
chr1 (1-41)||(29441865-29441905)


Alignment Details
Target: chr4 (Bit Score: 199; Significance: 1e-108; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 41520991 - 41521228
Alignment:
Q  1 tatgcaaggtccaaaattcaaactccgaccaccacaaaaaataataaagatcaataggtcaagatatacactaaaattttcaatttcaaaagaaacttga 100  Q
    |||||||||| |||  |||||||||||||||||| ||||||||   ||||||||||||||||| ||||  ||||||||||||||||||||||||||||||    
T  41520991 tatgcaaggttcaaggttcaaactccgaccaccaaaaaaaata---aagatcaataggtcaaggtatattctaaaattttcaatttcaaaagaaacttga 41521087  T
Q  101 aacttactactattaccaacaaagttgaaagatggtgcatcataaatatatcacatctctaacttccgagtagtgataataccctacattcgaacaaaga 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41521088 aacttactactattaccaacaaagttgaaagatggtgcatcataaatatatcacatctctaacttccgagtagtgataataccctacattcgaacaaaga 41521187  T
Q  201 aacaaaattagatgcctttgttttatatagatacttgaaag 241  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  41521188 aacaaaattagatgcctttgttttatatagatacttgaaag 41521228  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 25783188 - 25783228
Alignment:
Q  1 tatgcaaggtccaaaattcaaactccgaccaccacaaaaaa 41  Q
    |||||||||||| || |||||| ||||||||||||||||||    
T  25783188 tatgcaaggtccgaagttcaaattccgaccaccacaaaaaa 25783228  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 25988846 - 25988806
Alignment:
Q  1 tatgcaaggtccaaaattcaaactccgaccaccacaaaaaa 41  Q
    |||||||||||||  ||||||||||||||||||||||||||    
T  25988846 tatgcaaggtccaggattcaaactccgaccaccacaaaaaa 25988806  T

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Target: chr8 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 17 - 46
Target Start/End: Complemental strand, 24203290 - 24203261
Alignment:
Q  17 ttcaaactccgaccaccacaaaaaataata 46  Q
    ||||||||||||||||||||||||||||||    
T  24203290 ttcaaactccgaccaccacaaaaaataata 24203261  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 18023716 - 18023756
Alignment:
Q  1 tatgcaaggtccaaaattcaaactccgaccaccacaaaaaa 41  Q
    |||||||||||||   |||||||||||||||||||||||||    
T  18023716 tatgcaaggtccagggttcaaactccgaccaccacaaaaaa 18023756  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 21554958 - 21554918
Alignment:
Q  1 tatgcaaggtccaaaattcaaactccgaccaccacaaaaaa 41  Q
    |||||||||||||  |||||||| |||||||||||||||||    
T  21554958 tatgcaaggtccaggattcaaaccccgaccaccacaaaaaa 21554918  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 5267061 - 5267101
Alignment:
Q  1 tatgcaaggtccaaaattcaaactccgaccaccacaaaaaa 41  Q
    ||||||||||||  ||||||||| |||||||||||||||||    
T  5267061 tatgcaaggtccggaattcaaaccccgaccaccacaaaaaa 5267101  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 8136656 - 8136616
Alignment:
Q  1 tatgcaaggtccaaaattcaaactccgaccaccacaaaaaa 41  Q
    ||||||||||||||  ||||||| |||||||||||||||||    
T  8136656 tatgcaaggtccaaggttcaaaccccgaccaccacaaaaaa 8136616  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 40520789 - 40520825
Alignment:
Q  1 tatgcaaggtccaaaattcaaactccgaccaccacaa 37  Q
    ||||||||||||||| ||||||| |||||||||||||    
T  40520789 tatgcaaggtccaaagttcaaaccccgaccaccacaa 40520825  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 50459753 - 50459713
Alignment:
Q  1 tatgcaaggtccaaaattcaaactccgaccaccacaaaaaa 41  Q
    |||| |||||||||  |||||||||||||||||||||||||    
T  50459753 tatgtaaggtccaaggttcaaactccgaccaccacaaaaaa 50459713  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 4138028 - 4138068
Alignment:
Q  1 tatgcaaggtccaaaattcaaactccgaccaccacaaaaaa 41  Q
    |||||||||||| | |||||||| |||||||||||||||||    
T  4138028 tatgcaaggtccgagattcaaaccccgaccaccacaaaaaa 4138068  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 16082170 - 16082210
Alignment:
Q  1 tatgcaaggtccaaaattcaaactccgaccaccacaaaaaa 41  Q
    ||||||||||||||| ||||| |||||||||||| ||||||    
T  16082170 tatgcaaggtccaaagttcaacctccgaccaccaaaaaaaa 16082210  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 29441905 - 29441865
Alignment:
Q  1 tatgcaaggtccaaaattcaaactccgaccaccacaaaaaa 41  Q
    |||||||| ||| | ||||||||||||||||||||||||||    
T  29441905 tatgcaagatccgagattcaaactccgaccaccacaaaaaa 29441865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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