View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6429_low_32 (Length: 265)
Name: NF6429_low_32
Description: NF6429
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6429_low_32 |
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Alignment Details
Target: chr5 (Bit Score: 133; Significance: 3e-69; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 5 - 157
Target Start/End: Original strand, 34404030 - 34404182
Alignment:
| Q |
5 |
agtacactctttatttataagctagctcatctctcaatatcttaaaagtggccgatgtgggactaaatttcttcttgctttaaccttattgtagagtatt |
104 |
Q |
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| T |
34404030 |
agtacactctttatttataagctagctcatctctcaatgtcttaaaagtggccgatgtgggactaaatttcttcatgctttaaccttattgttgagtatt |
34404129 |
T |
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| Q |
105 |
tctttttggtaatgtgcaggcaatcctttcttattctataaactcccaatttg |
157 |
Q |
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| T |
34404130 |
tctttttggtaatgtgcaggcaatcctttcttattctttaaacttccaatttg |
34404182 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 115; Significance: 2e-58; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 6 - 128
Target Start/End: Complemental strand, 34264328 - 34264206
Alignment:
| Q |
6 |
gtacactctttatttataagctagctcatctctcaatatcttaaaagtggccgatgtgggactaaatttcttcttgctttaaccttattgtagagtattt |
105 |
Q |
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| T |
34264328 |
gtacactctttatttataagctagctcatctctcaatatcttaaaagtggccgatgtgggactaaatttcatcttgctttaaccttattgtagagtattt |
34264229 |
T |
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| Q |
106 |
ctttttggtaatgtgcaggcaat |
128 |
Q |
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| T |
34264228 |
ctttttggtaatgtgcagacaat |
34264206 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 168 - 241
Target Start/End: Complemental strand, 34264222 - 34264149
Alignment:
| Q |
168 |
ggtaatgtgcagacaatttgttttaagtcgtttctctttttcgatatcattcaacagaactaaccagagtataa |
241 |
Q |
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| T |
34264222 |
ggtaatgtgcagacaatttgttttaagtcgtttctctttttccatatcattcaacagaactaaccagagtataa |
34264149 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 85; Significance: 1e-40; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 1 - 156
Target Start/End: Original strand, 8340065 - 8340224
Alignment:
| Q |
1 |
agctagtacactctttatttataagctagctcatctctcaatatcttaaaagtgg--ccgatgtgggactaaatttcttcttgcttt-aaccttattgta |
97 |
Q |
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| T |
8340065 |
agctagtacactctttatttataacctaactcatctctcaatgtcttaagagtggccccgatgtaggactaaatttgttcttgctttaaaccttattgta |
8340164 |
T |
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| Q |
98 |
gagtatttcttttt-ggtaatgtgcaggcaatcctttcttattctataaactcccaattt |
156 |
Q |
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| T |
8340165 |
gagtccttgtttttaagtaatgtgcaggcaatcttttcttattctttaaactcccaattt |
8340224 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 148
Target Start/End: Complemental strand, 32161576 - 32161427
Alignment:
| Q |
1 |
agctagtacactctttatttataagctagctcatctctcaatatcttaaaagtggccgatgtgggactaaatttcttcttgctttaaccttattgtagag |
100 |
Q |
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|||| ||| ||||||||||||||| ||| |||| |||||||| | |||||| | | ||||||||||||| ||| |||||||||||||||||||||||| |
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| T |
32161576 |
agcttgtagactctttatttataacctaactcacctctcaatgtattaaaactagttgatgtgggactaagtttgatcttgctttaaccttattgtagag |
32161477 |
T |
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| Q |
101 |
tattt--ctttttggtaatgtgcaggcaatcctttcttattctataaact |
148 |
Q |
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| T |
32161476 |
ttttttgttttttggtaatgtgcagacaatcttttcttattctttaaact |
32161427 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 31529374 - 31529460
Alignment:
| Q |
1 |
agctagtacactctttatttataagctagctcatctctcaatatcttaaaagtggccgatgtgggactaaatttcttcttgctttaa |
87 |
Q |
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| T |
31529374 |
agcttgtagactctttatttataacctagttcacctctcaatgtattaaaactagccgatgtgggactaagtttgatcttgctttaa |
31529460 |
T |
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