View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6429_low_4 (Length: 573)

Name: NF6429_low_4
Description: NF6429
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6429_low_4
NF6429_low_4
[»] chr4 (1 HSPs)
chr4 (9-556)||(24280476-24281044)


Alignment Details
Target: chr4 (Bit Score: 398; Significance: 0; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 398; E-Value: 0
Query Start/End: Original strand, 9 - 556
Target Start/End: Complemental strand, 24281044 - 24280476
Alignment:
Q  9 gacatcatcatcacaaagaaaaaataagtatattatggacaaattaaatcaagagtttgactaaattaaaggatgttttatttttataagtccatttgta 108  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24281044 gacatcatcatcacaaagaaaaaatacgtatattatggacaaattaaatcaagagtttgactaaattaaaggatgttttatttttataagtccatttgta 24280945  T
Q  109 aacagaccttgaaagccaaggaatctacttaactcctaatgcactgc-----------------tgccatatgtgagactgatgtgcaaacccactatcc 191  Q
    ||||||||||||||||||||||||||| ||||||||||||||||  |                 ||||||||||||||||||||||||||||||||||||    
T  24280944 aacagaccttgaaagccaaggaatctaattaactcctaatgcacgcccatatttcaacgtcaactgccatatgtgagactgatgtgcaaacccactatcc 24280845  T
Q  192 actacccgacactggatatgttctacttgtagcatgctaactacgtctactttgcaatttgcaaatttattattatctccttgagtaatctttaagatct 291  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24280844 actacccgacactggatatgttctacttgtagcatgctaactacgtctactttgcaatttgcaaatttattattatctccttgagtaatctttaagatct 24280745  T
Q  292 ttcctttgttttttcttatgtagatatatggttagtcaaat--acagaaacctaaagagaagttaattaattgtcatatccacttgacgtgttttacatt 389  Q
    ||||||||||||||||||||| |||||||||||||||||||  | ||||||||||||| ||||||||||||||||||||||||||||||| |||||||||    
T  24280744 ttcctttgttttttcttatgtggatatatggttagtcaaataaaaagaaacctaaagaaaagttaattaattgtcatatccacttgacgtattttacatt 24280645  T
Q  390 ttctagaattttagcaatgacaactagtttggttgttttttccaagtaaaacaagacattttaatgttgtt--nnnnnnngacactttaatgaacgacta 487  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||| ||         |||| |||||||||||||||    
T  24280644 ttctagaattttagcaatgacaactagtttggttgttttttccaagtaaaagaagacactttaatgttcttaaaaaaaaagacaatttaatgaacgacta 24280545  T
Q  488 taagactaattactcgagatgaatgcgatacatttaagaggttgacatttactaatatattttcgtatg 556  Q
     |||| |||||| || ||||||||||||||||||||||||||||| ||||||||| |||||||||||||    
T  24280544 caagattaattattcaagatgaatgcgatacatttaagaggttgatatttactaacatattttcgtatg 24280476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University