View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6429_low_41 (Length: 239)

Name: NF6429_low_41
Description: NF6429
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6429_low_41
NF6429_low_41
[»] chr6 (9 HSPs)
chr6 (124-239)||(34264350-34264465)
chr6 (18-114)||(34259133-34259229)
chr6 (18-93)||(34264519-34264594)
chr6 (46-113)||(21379321-21379388)
chr6 (48-92)||(2742756-2742800)
chr6 (48-100)||(287489-287541)
chr6 (48-100)||(29130435-29130487)
chr6 (48-100)||(29144402-29144454)
chr6 (48-100)||(32973524-32973576)
[»] chr4 (2 HSPs)
chr4 (18-100)||(9603450-9603532)
chr4 (18-97)||(9568310-9568389)
[»] chr1 (1 HSPs)
chr1 (57-100)||(51875561-51875604)
[»] chr5 (1 HSPs)
chr5 (127-192)||(34403892-34403958)
[»] scaffold0134 (1 HSPs)
scaffold0134 (48-100)||(17145-17197)


Alignment Details
Target: chr6 (Bit Score: 92; Significance: 8e-45; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 124 - 239
Target Start/End: Complemental strand, 34264465 - 34264350
Alignment:
Q  124 ccggccaggcccaataatattttttctaattgtacactgcttttggttcagatttcgaaagttactttaacaaagttacacacagtcaaggatccaccaa 223  Q
    |||||||||||||||||||||| ||||||||| || ||||||||||||||||||| ||||||||||||||||||||  ||||||||||||||||||||||    
T  34264465 ccggccaggcccaataatatttattctaattggaccctgcttttggttcagattttgaaagttactttaacaaagtagcacacagtcaaggatccaccaa 34264366  T
Q  224 gcagtgttttgtttgt 239  Q
    ||||||||||||||||    
T  34264365 gcagtgttttgtttgt 34264350  T

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Target: chr6; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 18 - 114
Target Start/End: Complemental strand, 34259229 - 34259133
Alignment:
Q  18 gatactgccttctctattctacacaaaatacctctcaagtctttaaagcgatttggatgcgtttgtaaatcatggtctctctttttataaaacactc 114  Q
    |||| |||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||| ||||||||||||||||||| ||| || ||||||    
T  34259229 gatattgccttctctattctacacaaactacctcttaagtctttaaagcgatttggatgcgttcgtaaatcatggtctctcttattacaagacactc 34259133  T

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Target: chr6; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 18 - 93
Target Start/End: Complemental strand, 34264594 - 34264519
Alignment:
Q  18 gatactgccttctctattctacacaaaatacctctcaagtctttaaagcgatttggatgcgtttgtaaatcatggt 93  Q
    ||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||| ||||||||||||    
T  34264594 gatactgccttctctattctacacaaactacctcttaagtctttaaagcgatttggatgcgttcgtaaatcatggt 34264519  T

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Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 46 - 113
Target Start/End: Complemental strand, 21379388 - 21379321
Alignment:
Q  46 tacctctcaagtctttaaagcgatttggatgcgtttgtaaatcatggtctctctttttataaaacact 113  Q
    ||||||| || ||||| |||||||||||||||||  ||||||||||||||||||| ||  ||||||||    
T  21379388 tacctcttaaatctttgaagcgatttggatgcgtccgtaaatcatggtctctcttatttgaaaacact 21379321  T

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Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 48 - 92
Target Start/End: Complemental strand, 2742800 - 2742756
Alignment:
Q  48 cctctcaagtctttaaagcgatttggatgcgtttgtaaatcatgg 92  Q
    ||||| || ||||||||||||||||||||||| ||||||||||||    
T  2742800 cctctaaaatctttaaagcgatttggatgcgtatgtaaatcatgg 2742756  T

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Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 48 - 100
Target Start/End: Complemental strand, 287541 - 287489
Alignment:
Q  48 cctctcaagtctttaaagcgatttggatgcgtttgtaaatcatggtctctctt 100  Q
    ||||| || |||||||| ||||||||||| || |||||||||||| |||||||    
T  287541 cctctaaaatctttaaaacgatttggatgtgtatgtaaatcatggactctctt 287489  T

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Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 48 - 100
Target Start/End: Original strand, 29130435 - 29130487
Alignment:
Q  48 cctctcaagtctttaaagcgatttggatgcgtttgtaaatcatggtctctctt 100  Q
    ||||| || ||||| |||||||||| || |||| |||||||||||||||||||    
T  29130435 cctcttaaatctttcaagcgatttgaatccgttcgtaaatcatggtctctctt 29130487  T

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Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 48 - 100
Target Start/End: Original strand, 29144402 - 29144454
Alignment:
Q  48 cctctcaagtctttaaagcgatttggatgcgtttgtaaatcatggtctctctt 100  Q
    ||||| || ||||| |||||||||||||||||| ||||||| |||| ||||||    
T  29144402 cctcttaaatctttgaagcgatttggatgcgttcgtaaatcttggtatctctt 29144454  T

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Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 48 - 100
Target Start/End: Complemental strand, 32973576 - 32973524
Alignment:
Q  48 cctctcaagtctttaaagcgatttggatgcgtttgtaaatcatggtctctctt 100  Q
    ||||| || ||||| ||||| |||| ||| |||||||||||||||||||||||    
T  32973576 cctcttaaatctttcaagcgttttgaatgtgtttgtaaatcatggtctctctt 32973524  T

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Target: chr4 (Bit Score: 35; Significance: 0.00000000008; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 18 - 100
Target Start/End: Complemental strand, 9603532 - 9603450
Alignment:
Q  18 gatactgccttctctattctacacaaaatacctctcaagtctttaaagcgatttggatgcgtttgtaaatcatggtctctctt 100  Q
    |||| ||||||||| ||||||  |||| | ||||| || ||||| |||||||||| |||| |||||||| |||||||||||||    
T  9603532 gatattgccttctccattctatccaaattgcctcttaaatcttttaagcgatttgaatgcttttgtaaaccatggtctctctt 9603450  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 18 - 97
Target Start/End: Original strand, 9568310 - 9568389
Alignment:
Q  18 gatactgccttctctattctacacaaaatacctctcaagtctttaaagcgatttggatgcgtttgtaaatcatggtctct 97  Q
    |||| ||||||||||||||||  |||| | ||| | || ||| | |||||||||| ||||||| ||||||||||||||||    
T  9568310 gatattgccttctctattctatccaaattgccttttaaatctattaagcgatttgaatgcgttcgtaaatcatggtctct 9568389  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 57 - 100
Target Start/End: Complemental strand, 51875604 - 51875561
Alignment:
Q  57 tctttaaagcgatttggatgcgtttgtaaatcatggtctctctt 100  Q
    |||||||||||||||||||| || |||||||||||||| |||||    
T  51875604 tctttaaagcgatttggatgtgtatgtaaatcatggtcactctt 51875561  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 127 - 192
Target Start/End: Original strand, 34403892 - 34403958
Alignment:
Q  127 gccaggcccaataatatttt-ttctaattgtacactgcttttggttcagatttcgaaagttacttta 192  Q
    ||||| |||||||||||||| || || ||| ||||||||||| |||||||||| ||| |||||||||    
T  34403892 gccagacccaataatattttgttttatttggacactgctttttgttcagattttgaacgttacttta 34403958  T

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Target: scaffold0134 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0134
Description:

Target: scaffold0134; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 48 - 100
Target Start/End: Complemental strand, 17197 - 17145
Alignment:
Q  48 cctctcaagtctttaaagcgatttggatgcgtttgtaaatcatggtctctctt 100  Q
    ||||| || ||||| ||| |||||| ||||||||| |||||||||||||||||    
T  17197 cctcttaaatctttgaagagatttgaatgcgtttgcaaatcatggtctctctt 17145  T

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