View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6429_low_42 (Length: 239)
Name: NF6429_low_42
Description: NF6429
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6429_low_42 |
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Alignment Details
Target: chr5 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 39403676 - 39403455
Alignment:
| Q |
1 |
cgccctagatcatctcacaactatttgctcgagtttatgggcatattttagaacattcgtaacaaactcaatttcaaaccaattgccaacacaaccttca |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39403676 |
cgccctagatcatctcacaactatttgctcgagtttatgggcatattttagaacattcgtaacaaactcaatttcaaaccaattgccaacacaaccttca |
39403577 |
T |
|
| Q |
101 |
aattcaataacttttagctcatcatgagagaatccttcaatatccctactatctttcctaaaccctaaaccctaaacgaaagtttatgcaaaacctagtt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39403576 |
aattcaataacttttagctcatcatgagagaatccttcaatatccctactatctttcctaaaccctaaaccctaaacgaaagtttatgcaaaacctagtt |
39403477 |
T |
|
| Q |
201 |
gtaaccttgagatggcataaag |
222 |
Q |
| |
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|||||||||||||||||||||| |
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|
| T |
39403476 |
gtaaccttgagatggcataaag |
39403455 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 79; Significance: 5e-37; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 14 - 156
Target Start/End: Original strand, 48106946 - 48107088
Alignment:
| Q |
14 |
ctcacaactatttgctcgagtttatgggcatattttagaacattcgtaacaaactcaatttcaaaccaattgccaacacaaccttcaaattcaataactt |
113 |
Q |
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||||||||||||||||| ||||| ||||||||||||||||||||| ||||||| ||||||||| |||||||||||||||| ||| | ||||||||||||| |
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| T |
48106946 |
ctcacaactatttgctcaagtttgtgggcatattttagaacattcataacaaattcaatttcataccaattgccaacacagcctcctaattcaataactt |
48107045 |
T |
|
| Q |
114 |
ttagctcatcatgagagaatccttcaatatccctactatcttt |
156 |
Q |
| |
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||| || |||||||||||| ||||| |||||| ||||||| |
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| T |
48107046 |
ttacttcgtcatgagagaatgtttcaacatccctgatatcttt |
48107088 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 19 - 133
Target Start/End: Complemental strand, 47929519 - 47929405
Alignment:
| Q |
19 |
aactatttgctcgagtttatgggcatattttagaacattcgtaacaaactcaatttcaaaccaattgccaacacaaccttcaaattcaataacttttagc |
118 |
Q |
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|||||||| ||| ||||| || |||||||||| ||||||| |||||||||||||||||||||||||||||||||| ||| |||||||||||||||||| | |
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| T |
47929519 |
aactattttctcaagtttgtgtgcatattttataacattcataacaaactcaatttcaaaccaattgccaacacatcctccaaattcaataacttttacc |
47929420 |
T |
|
| Q |
119 |
tcatcatgagagaat |
133 |
Q |
| |
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|| | ||||||||| |
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| T |
47929419 |
tcgttgtgagagaat |
47929405 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 15 - 156
Target Start/End: Original strand, 48105955 - 48106095
Alignment:
| Q |
15 |
tcacaactatttgctcgagtttatgggcatattttagaacattcgtaacaaactcaatttcaaaccaattgccaacacaaccttcaaattcaataacttt |
114 |
Q |
| |
|
||||||| |||||||| |||||||| ||||||||| ||||||| ||||||||||||||||| ||||||| ||||||||||| | |||||||||||||| |
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| T |
48105955 |
tcacaaccatttgctcaagtttatgaacatattttaaaacattcctaacaaactcaatttcataccaattatcaacacaacctcccaattcaataacttt |
48106054 |
T |
|
| Q |
115 |
tagctcatcatgagagaatccttcaatatccctactatcttt |
156 |
Q |
| |
|
|| || |||||||| ||| ||||| ||||||| ||||||| |
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|
| T |
48106055 |
tacct-gtcatgagataatatttcaacatccctaatatcttt |
48106095 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 20 - 156
Target Start/End: Original strand, 47050916 - 47051052
Alignment:
| Q |
20 |
actatttgctcgagtttatgggcatattttagaacattcgtaacaaactcaatttcaaaccaattgccaacacaaccttcaaattcaataacttttagct |
119 |
Q |
| |
|
||||||||||| || || |||||| |||||||||||||| ||||||||||||||||| |||||||||||||||||||| ||||||||||| ||| | |
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|
| T |
47050916 |
actatttgctcaagcttgtgggcacattttagaacattcttaacaaactcaatttcataccaattgccaacacaacctctcaattcaataacccttatat |
47051015 |
T |
|
| Q |
120 |
catcatgagagaatccttcaatatccctactatcttt |
156 |
Q |
| |
|
|||||||||| ||| |||| ||||||| ||||||| |
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|
| T |
47051016 |
catcatgagataatatctcaacatccctaatatcttt |
47051052 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 43 - 147
Target Start/End: Complemental strand, 48895828 - 48895724
Alignment:
| Q |
43 |
atattttagaacattcgtaacaaactcaatttcaaaccaattgccaacacaaccttcaaattcaataacttttagctcatcatgagagaatccttcaata |
142 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||| | |||||||||| || | || |||||||||||| ||||| | |
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| T |
48895828 |
atattttagaacattcataacaaactcaatttcaaaccaattgccaacacaacctcccaattcaataatcttaacttcgtcatgagagaatgtttcaaca |
48895729 |
T |
|
| Q |
143 |
tccct |
147 |
Q |
| |
|
||||| |
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|
| T |
48895728 |
tccct |
48895724 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 32 - 112
Target Start/End: Original strand, 48452883 - 48452961
Alignment:
| Q |
32 |
agtttatgggcatattttagaacattcgtaacaaactcaatttcaaaccaattgccaacacaaccttcaaattcaataact |
112 |
Q |
| |
|
||||| ||||||||||||| |||||| | ||||||||||||||| || ||||||||||||||||| | |||||||||||| |
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|
| T |
48452883 |
agtttgtgggcatatttta--acattcatgacaaactcaatttcatacgaattgccaacacaacctcccaattcaataact |
48452961 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 14 - 130
Target Start/End: Complemental strand, 50460407 - 50460291
Alignment:
| Q |
14 |
ctcacaactatttgctcgagtttatgggcatattttagaacattcgtaacaaactcaatttcaaaccaattgccaacacaaccttcaaattcaataactt |
113 |
Q |
| |
|
|||| ||||||| |||| |||| ||||||||||| ||| ||||| | ||||||||||||||| |||||||||||||||| ||| | |||||||||||| |
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| T |
50460407 |
ctcaaaactattcgctcatgtttctgggcatatttcagagcattcattacaaactcaatttcataccaattgccaacacagcctcccaattcaataactc |
50460308 |
T |
|
| Q |
114 |
ttagctcatcatgagag |
130 |
Q |
| |
|
| | ||| ||||||||| |
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|
| T |
50460307 |
tgatctcgtcatgagag |
50460291 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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