View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6429_low_43 (Length: 238)
Name: NF6429_low_43
Description: NF6429
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6429_low_43 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 16 - 238
Target Start/End: Complemental strand, 34415258 - 34415037
Alignment:
| Q |
16 |
aagtttctctaggcatcaaaagagaagcagtttgatgtaatctcgtagattctttgactacacacttcatgtggttcatttgattcagatcattttcatc |
115 |
Q |
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| T |
34415258 |
aagtttctctaggtatcaaaagaggtgcaggtggatgtaatctcatagattctttgactacacacttcatgtagttcatttgattcagatcattttcatc |
34415159 |
T |
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| Q |
116 |
cacttttgatttataccccacaacttttcttatttcttcttggagtttcttcatgatgtttttatgcctcatgagctcagcaaatgtccactcgagaagt |
215 |
Q |
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| T |
34415158 |
cacttttgatttataccccacaacttttcttatttcttcttgga-tttcttcatgatgtttttatgcctcatgagctcagcaaatgtccactcgagaagt |
34415060 |
T |
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| Q |
216 |
gttgaagaagtatcacctcctcc |
238 |
Q |
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| T |
34415059 |
gttgaagaagtatcacctcctcc |
34415037 |
T |
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Back To:
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Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 49 - 157
Target Start/End: Original strand, 43359599 - 43359707
Alignment:
| Q |
49 |
gatgtaatctcgtagattctttgactacacacttcatgtggttcatttgattcagatcattttcatccacttttgatttataccccacaacttttcttat |
148 |
Q |
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||||||||||| ||| |||||| ||||||||||| | | | ||||||||| | |||||||| || ||||||||||||| || |||||| |||||| |
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| T |
43359599 |
gatgtaatctcatagtttctttcactacacactttaaataatgcatttgattgatgtcattttcttctacttttgatttattgcctacaactcttcttac |
43359698 |
T |
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| Q |
149 |
ttcttcttg |
157 |
Q |
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| T |
43359699 |
ttcttcttg |
43359707 |
T |
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