View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6429_low_47 (Length: 229)

Name: NF6429_low_47
Description: NF6429
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6429_low_47
NF6429_low_47
[»] chr3 (16 HSPs)
chr3 (6-229)||(34414798-34415021)
chr3 (173-229)||(34924552-34924608)
chr3 (179-225)||(25453877-25453923)
chr3 (182-227)||(9279342-9279387)
chr3 (180-228)||(26542544-26542592)
chr3 (182-229)||(27792881-27792928)
chr3 (180-227)||(37138297-37138344)
chr3 (183-225)||(482810-482852)
chr3 (182-228)||(43115065-43115111)
chr3 (180-225)||(2825154-2825199)
chr3 (182-227)||(21367676-21367721)
chr3 (187-228)||(23808079-23808120)
chr3 (180-229)||(51206512-51206561)
chr3 (177-229)||(2719472-2719524)
chr3 (185-225)||(24280723-24280763)
chr3 (187-227)||(34954096-34954136)
[»] chr7 (13 HSPs)
chr7 (177-227)||(6552308-6552358)
chr7 (125-227)||(26935573-26935675)
chr7 (177-228)||(9038116-9038167)
chr7 (182-229)||(27378842-27378889)
chr7 (177-229)||(7244684-7244736)
chr7 (179-227)||(12792579-12792627)
chr7 (177-229)||(25596037-25596089)
chr7 (182-229)||(24363615-24363662)
chr7 (182-229)||(44910613-44910660)
chr7 (179-229)||(7623144-7623194)
chr7 (177-229)||(39630598-39630651)
chr7 (182-227)||(48917362-48917407)
chr7 (177-225)||(36517583-36517631)
[»] chr4 (20 HSPs)
chr4 (182-228)||(1404426-1404472)
chr4 (187-229)||(53792585-53792627)
chr4 (183-223)||(44249295-44249335)
chr4 (182-228)||(35064864-35064910)
chr4 (149-227)||(50400463-50400541)
chr4 (182-227)||(28423539-28423584)
chr4 (149-226)||(47800599-47800676)
chr4 (172-229)||(53673672-53673729)
chr4 (177-229)||(35743286-35743338)
chr4 (179-227)||(51630117-51630165)
chr4 (182-229)||(7694024-7694071)
chr4 (177-228)||(47970300-47970351)
chr4 (177-226)||(6853229-6853278)
chr4 (182-227)||(11802543-11802588)
chr4 (177-226)||(18011875-18011924)
chr4 (177-229)||(18628557-18628609)
chr4 (177-229)||(28300313-28300365)
chr4 (183-227)||(45927359-45927403)
chr4 (193-225)||(51210473-51210505)
chr4 (179-227)||(54325053-54325101)
[»] chr2 (12 HSPs)
chr2 (179-228)||(41817174-41817223)
chr2 (182-229)||(35379030-35379077)
chr2 (177-225)||(33319830-33319878)
chr2 (183-229)||(11488287-11488333)
chr2 (182-228)||(15977994-15978040)
chr2 (159-229)||(32364745-32364815)
chr2 (179-229)||(44443327-44443377)
chr2 (177-226)||(3067396-3067445)
chr2 (182-227)||(27699545-27699590)
chr2 (177-229)||(8187467-8187519)
chr2 (182-226)||(24097817-24097861)
chr2 (173-229)||(27288631-27288687)
[»] chr8 (16 HSPs)
chr8 (181-229)||(25869280-25869328)
chr8 (182-229)||(11569471-11569518)
chr8 (180-229)||(42215096-42215145)
chr8 (177-224)||(11494150-11494197)
chr8 (182-225)||(27028840-27028883)
chr8 (182-229)||(28769353-28769400)
chr8 (182-229)||(30277259-30277306)
chr8 (177-227)||(20672754-20672804)
chr8 (185-227)||(42370377-42370419)
chr8 (177-229)||(779075-779127)
chr8 (182-226)||(9956831-9956875)
chr8 (183-227)||(11795102-11795146)
chr8 (179-227)||(33714252-33714300)
chr8 (177-225)||(36643911-36643959)
chr8 (182-226)||(39881769-39881813)
chr8 (179-227)||(42215322-42215370)
[»] chr1 (29 HSPs)
chr1 (177-229)||(4700080-4700132)
chr1 (179-229)||(14629980-14630030)
chr1 (183-229)||(35590906-35590952)
chr1 (182-227)||(45975699-45975744)
chr1 (179-227)||(6292499-6292547)
chr1 (177-225)||(41195211-41195259)
chr1 (182-226)||(52190138-52190182)
chr1 (182-229)||(12477301-12477348)
chr1 (182-229)||(25479590-25479637)
chr1 (182-229)||(27140487-27140534)
chr1 (182-229)||(45205077-45205124)
chr1 (182-225)||(51695513-51695556)
chr1 (147-229)||(15784303-15784385)
chr1 (182-228)||(27887133-27887179)
chr1 (192-225)||(601060-601093)
chr1 (182-227)||(5047155-5047200)
chr1 (186-227)||(7472324-7472365)
chr1 (179-224)||(10439692-10439737)
chr1 (192-229)||(15361059-15361096)
chr1 (187-224)||(24702254-24702291)
chr1 (184-229)||(26461955-26462000)
chr1 (186-227)||(35925703-35925744)
chr1 (182-227)||(37240851-37240896)
chr1 (179-228)||(43113117-43113166)
chr1 (179-227)||(2294917-2294965)
chr1 (177-229)||(6279403-6279455)
chr1 (177-229)||(11211122-11211174)
chr1 (177-229)||(34179886-34179938)
chr1 (181-225)||(43338124-43338168)
[»] chr5 (10 HSPs)
chr5 (182-229)||(10272445-10272492)
chr5 (182-227)||(7984978-7985023)
chr5 (182-227)||(17258899-17258944)
chr5 (180-227)||(10125734-10125781)
chr5 (182-227)||(4014440-4014485)
chr5 (182-227)||(7674657-7674702)
chr5 (182-227)||(36318783-36318828)
chr5 (177-229)||(7319022-7319074)
chr5 (195-227)||(8089303-8089335)
chr5 (182-226)||(17368685-17368729)
[»] chr6 (12 HSPs)
chr6 (182-227)||(1497990-1498035)
chr6 (184-228)||(34939755-34939799)
chr6 (182-228)||(3528812-3528858)
chr6 (149-228)||(24836217-24836300)
chr6 (182-227)||(835265-835310)
chr6 (192-225)||(12230380-12230413)
chr6 (182-227)||(33911298-33911343)
chr6 (181-229)||(17241266-17241314)
chr6 (179-223)||(24974436-24974480)
chr6 (182-226)||(26694887-26694931)
chr6 (177-229)||(28088236-28088288)
chr6 (180-224)||(29837103-29837147)
[»] scaffold0011 (1 HSPs)
scaffold0011 (180-229)||(14617-14666)
[»] scaffold0024 (1 HSPs)
scaffold0024 (149-217)||(21311-21379)


Alignment Details
Target: chr3 (Bit Score: 204; Significance: 1e-111; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 6 - 229
Target Start/End: Complemental strand, 34415021 - 34414798
Alignment:
Q  6 aaattatgaaaatggaaattctttatgctcttgttttaagttgggcatgcccgactatgtctagtttgaataaacactcatttcagtgtttatcgcataa 105  Q
    ||||| |||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  34415021 aaattgtgaaaatggaaattctttatgctcttgttttaagttgggcgtgcgcgactatgtctagtttgaataaacactcatttcagtgtttatcgcataa 34414922  T
Q  106 acacttatcacatttatgcgtaaactatttttatgacaagtggtaaaattaagttaaattgtttccgtatgaactattttcataaactatcatggagagt 205  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  34414921 acgcttatcacatttatgcgtaaactatttttatgacaagtggtaaaattaagttaaattgtttccgtacgaactattttcataaactatcatggagagt 34414822  T
Q  206 ttatgaaaataagctgaaaacaac 229  Q
    ||||||||||||||||||||||||    
T  34414821 ttatgaaaataagctgaaaacaac 34414798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 173 - 229
Target Start/End: Complemental strand, 34924608 - 34924552
Alignment:
Q  173 tatgaactattttcataaactatcatggagagtttatgaaaataagctgaaaacaac 229  Q
    ||||| |||||||||||| ||||| | ||||| ||||||||||||||||||||||||    
T  34924608 tatgagctattttcataagctatcttagagagcttatgaaaataagctgaaaacaac 34924552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 179 - 225
Target Start/End: Complemental strand, 25453923 - 25453877
Alignment:
Q  179 ctattttcataaactatcatggagagtttatgaaaataagctgaaaa 225  Q
    |||||||||||||||||| |||| || ||||||||||||||||||||    
T  25453923 ctattttcataaactatcctggaaagcttatgaaaataagctgaaaa 25453877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 182 - 227
Target Start/End: Complemental strand, 9279387 - 9279342
Alignment:
Q  182 ttttcataaactatcatggagagtttatgaaaataagctgaaaaca 227  Q
    |||||||||||||||||| |||||||| | ||||||||||||||||    
T  9279387 ttttcataaactatcatgaagagtttaaggaaataagctgaaaaca 9279342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 180 - 228
Target Start/End: Original strand, 26542544 - 26542592
Alignment:
Q  180 tattttcataaactatcatggagagtttatgaaaataagctgaaaacaa 228  Q
    ||||||||||| |||| |||||||||||||| ||||||| |||||||||    
T  26542544 tattttcataagctattatggagagtttatggaaataagttgaaaacaa 26542592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 182 - 229
Target Start/End: Original strand, 27792881 - 27792928
Alignment:
Q  182 ttttcataaactatcatggagagtttatgaaaataagctgaaaacaac 229  Q
    |||||||||||||||||| |||| ||||  ||||||||||||||||||    
T  27792881 ttttcataaactatcatgtagagcttatagaaataagctgaaaacaac 27792928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 180 - 227
Target Start/End: Original strand, 37138297 - 37138344
Alignment:
Q  180 tattttcataaactatcatggagagtttatgaaaataagctgaaaaca 227  Q
    ||||||||||| ||||| | ||||||||| ||||||||||||||||||    
T  37138297 tattttcataagctatcttagagagtttaggaaaataagctgaaaaca 37138344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 183 - 225
Target Start/End: Complemental strand, 482852 - 482810
Alignment:
Q  183 tttcataaactatcatggagagtttatgaaaataagctgaaaa 225  Q
    |||||||||||||| || |||||||||| ||||||||||||||    
T  482852 tttcataaactatcttgaagagtttatggaaataagctgaaaa 482810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 182 - 228
Target Start/End: Original strand, 43115065 - 43115111
Alignment:
Q  182 ttttcataaactatcatggagagtttatgaaaataagctgaaaacaa 228  Q
    ||||||| ||||||||| ||||| ||||| |||||||||||||||||    
T  43115065 ttttcatgaactatcattgagagcttatggaaataagctgaaaacaa 43115111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 180 - 225
Target Start/End: Original strand, 2825154 - 2825199
Alignment:
Q  180 tattttcataaactatcatggagagtttatgaaaataagctgaaaa 225  Q
    ||||||||||| ||||| ||||||| ||||||||||||||| ||||    
T  2825154 tattttcataagctatcttggagagcttatgaaaataagcttaaaa 2825199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 182 - 227
Target Start/End: Original strand, 21367676 - 21367721
Alignment:
Q  182 ttttcataaactatcatggagagtttatgaaaataagctgaaaaca 227  Q
    ||||||||| ||||| ||||||  ||||||||||||||||||||||    
T  21367676 ttttcataagctatcttggagaacttatgaaaataagctgaaaaca 21367721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 187 - 228
Target Start/End: Complemental strand, 23808120 - 23808079
Alignment:
Q  187 ataaactatcatggagagtttatgaaaataagctgaaaacaa 228  Q
    |||| ||||| ||||||||||||||||||||| |||||||||    
T  23808120 ataagctatcttggagagtttatgaaaataagatgaaaacaa 23808079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 180 - 229
Target Start/End: Complemental strand, 51206561 - 51206512
Alignment:
Q  180 tattttcataaactatcatggagagtttatgaaaataagctgaaaacaac 229  Q
    |||||||| ||  |||||| ||||| ||||||||||||||||||||||||    
T  51206561 tattttcaaaagttatcattgagagcttatgaaaataagctgaaaacaac 51206512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 177 - 229
Target Start/End: Original strand, 2719472 - 2719524
Alignment:
Q  177 aactattttcataaactatcatggagagtttatgaaaataagctgaaaacaac 229  Q
    |||| ||||||||| ||||| ||||||  ||||||||||||||||| ||||||    
T  2719472 aactgttttcataagctatcttggagaacttatgaaaataagctgagaacaac 2719524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 185 - 225
Target Start/End: Original strand, 24280723 - 24280763
Alignment:
Q  185 tcataaactatcatggagagtttatgaaaataagctgaaaa 225  Q
    |||||| ||||||||||||| ||||||||||||| ||||||    
T  24280723 tcataagctatcatggagagcttatgaaaataagttgaaaa 24280763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 187 - 227
Target Start/End: Original strand, 34954096 - 34954136
Alignment:
Q  187 ataaactatcatggagagtttatgaaaataagctgaaaaca 227  Q
    |||| |||||||||| || ||||||||||||||||||||||    
T  34954096 ataacctatcatggatagcttatgaaaataagctgaaaaca 34954136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 47; Significance: 6e-18; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 177 - 227
Target Start/End: Complemental strand, 6552358 - 6552308
Alignment:
Q  177 aactattttcataaactatcatggagagtttatgaaaataagctgaaaaca 227  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  6552358 aactattttcataaactatcatgcagagtttatgaaaataagctgaaaaca 6552308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 125 - 227
Target Start/End: Complemental strand, 26935675 - 26935573
Alignment:
Q  125 gtaaactatttttatgacaagtggtaaaattaagttaaattgtttccgtatgaactattttcataaactatcatggagagtttatgaaaataagctgaaa 224  Q
    |||| |||||||||| |||| || |||||| | |||||||||||| | ||||| |||||||||||| ||||  |  |||| ||||| |||||||||||||    
T  26935675 gtaagctatttttataacaaatgataaaataaggttaaattgttttcatatgagctattttcataatctattctaaagagcttatggaaataagctgaaa 26935576  T
Q  225 aca 227  Q
    |||    
T  26935575 aca 26935573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 177 - 228
Target Start/End: Original strand, 9038116 - 9038167
Alignment:
Q  177 aactattttcataaactatcatggagagtttatgaaaataagctgaaaacaa 228  Q
    |||| ||||||||||||||||||||||  || ||||||||||||||||||||    
T  9038116 aactgttttcataaactatcatggagaacttgtgaaaataagctgaaaacaa 9038167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 182 - 229
Target Start/End: Complemental strand, 27378889 - 27378842
Alignment:
Q  182 ttttcataaactatcatggagagtttatgaaaataagctgaaaacaac 229  Q
    ||||||||||||||| ||||||| |||||||||||| |||||||||||    
T  27378889 ttttcataaactatcctggagagcttatgaaaataaactgaaaacaac 27378842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 177 - 229
Target Start/End: Original strand, 7244684 - 7244736
Alignment:
Q  177 aactattttcataaactatcatggagagtttatgaaaataagctgaaaacaac 229  Q
    |||| ||||||||| ||||  ||||||| ||||||||||||||||||||||||    
T  7244684 aactgttttcataagctatattggagagcttatgaaaataagctgaaaacaac 7244736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 179 - 227
Target Start/End: Complemental strand, 12792627 - 12792579
Alignment:
Q  179 ctattttcataaactatcatggagagtttatgaaaataagctgaaaaca 227  Q
    |||||||||||| ||||| || |||| ||||||||||||||||||||||    
T  12792627 ctattttcataagctatcttgaagagcttatgaaaataagctgaaaaca 12792579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 177 - 229
Target Start/End: Original strand, 25596037 - 25596089
Alignment:
Q  177 aactattttcataaactatcatggagagtttatgaaaataagctgaaaacaac 229  Q
    |||| ||||||||| ||||| ||||||| ||||||||||||| ||||||||||    
T  25596037 aactcttttcataagctatcttggagagcttatgaaaataagttgaaaacaac 25596089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 182 - 229
Target Start/End: Complemental strand, 24363662 - 24363615
Alignment:
Q  182 ttttcataaactatcatggagagtttatgaaaataagctgaaaacaac 229  Q
    ||||||||| ||||| ||||||| ||||| ||||||||||||||||||    
T  24363662 ttttcataagctatcctggagaggttatggaaataagctgaaaacaac 24363615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 182 - 229
Target Start/End: Original strand, 44910613 - 44910660
Alignment:
Q  182 ttttcataaactatcatggagagtttatgaaaataagctgaaaacaac 229  Q
    ||||||||||||||||||||||| || || |||||||| |||||||||    
T  44910613 ttttcataaactatcatggagagcttgtggaaataagccgaaaacaac 44910660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 179 - 229
Target Start/End: Original strand, 7623144 - 7623194
Alignment:
Q  179 ctattttcataaactatcatggagagtttatgaaaataagctgaaaacaac 229  Q
    |||||||||||||||||| || |||||||| ||||||||||  ||||||||    
T  7623144 ctattttcataaactatcttgaagagtttacgaaaataagccaaaaacaac 7623194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 177 - 229
Target Start/End: Original strand, 39630598 - 39630651
Alignment:
Q  177 aactattttcataaactatcatggagagtttatgaaaataag-ctgaaaacaac 229  Q
    |||||||||| ||||||||| ||||||||||||  ||||||| |||||||||||    
T  39630598 aactattttcgtaaactatcttggagagtttattgaaataagcctgaaaacaac 39630651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 182 - 227
Target Start/End: Complemental strand, 48917407 - 48917362
Alignment:
Q  182 ttttcataaactatcatggagagtttatgaaaataagctgaaaaca 227  Q
    ||||||||| ||||| ||||||| |||||||||||||||| |||||    
T  48917407 ttttcataagctatcttggagagcttatgaaaataagctggaaaca 48917362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 177 - 225
Target Start/End: Original strand, 36517583 - 36517631
Alignment:
Q  177 aactattttcataaactatcatggagagtttatgaaaataagctgaaaa 225  Q
    |||||||||||||| ||||| ||||||  |||||||||||| |||||||    
T  36517583 aactattttcataagctatcttggagaaattatgaaaataaactgaaaa 36517631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 20)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 182 - 228
Target Start/End: Original strand, 1404426 - 1404472
Alignment:
Q  182 ttttcataaactatcatggagagtttatgaaaataagctgaaaacaa 228  Q
    ||||||||||||||||||||||| |||||||| ||||||||||||||    
T  1404426 ttttcataaactatcatggagagcttatgaaagtaagctgaaaacaa 1404472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 187 - 229
Target Start/End: Original strand, 53792585 - 53792627
Alignment:
Q  187 ataaactatcatggagagtttatgaaaataagctgaaaacaac 229  Q
    |||||||||| ||||||||||||||||||||||||||||||||    
T  53792585 ataaactatcttggagagtttatgaaaataagctgaaaacaac 53792627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 183 - 223
Target Start/End: Original strand, 44249295 - 44249335
Alignment:
Q  183 tttcataaactatcatggagagtttatgaaaataagctgaa 223  Q
    |||||||||||||| ||||||||||||||||||||||||||    
T  44249295 tttcataaactatcttggagagtttatgaaaataagctgaa 44249335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 182 - 228
Target Start/End: Original strand, 35064864 - 35064910
Alignment:
Q  182 ttttcataaactatcatggagagtttatgaaaataagctgaaaacaa 228  Q
    |||||||||  |||||||||||||||||| |||||||||||||||||    
T  35064864 ttttcataagatatcatggagagtttatggaaataagctgaaaacaa 35064910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 149 - 227
Target Start/End: Original strand, 50400463 - 50400541
Alignment:
Q  149 taaaattaagttaaattgtttccgtatgaactattttcataaactatcatggagagtttatgaaaataagctgaaaaca 227  Q
    |||||| |||| ||||||| | ||||| |  | |||||||||||||||||| | | |||||||||||||||||||||||    
T  50400463 taaaataaagtcaaattgtgttcgtataagttgttttcataaactatcatgaaaactttatgaaaataagctgaaaaca 50400541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 182 - 227
Target Start/End: Original strand, 28423539 - 28423584
Alignment:
Q  182 ttttcataaactatcatggagagtttatgaaaataagctgaaaaca 227  Q
    ||||| ||| |||||||| |||||||||||||||||||||||||||    
T  28423539 ttttcctaagctatcatgtagagtttatgaaaataagctgaaaaca 28423584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 149 - 226
Target Start/End: Original strand, 47800599 - 47800676
Alignment:
Q  149 taaaattaagttaaattgtttccgtatgaactattttcataaactatcatggagagtttatgaaaataagctgaaaac 226  Q
    |||||| |||||||| |||||  |||| | || ||||||||| ||||| || |||| |||||||||||||||||||||    
T  47800599 taaaataaagttaaaatgtttttgtataagctgttttcataagctatcttgaagagcttatgaaaataagctgaaaac 47800676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 172 - 229
Target Start/End: Complemental strand, 53673729 - 53673672
Alignment:
Q  172 gtatgaactattttcataaactatcatggagagtttatgaaaataagctgaaaacaac 229  Q
    |||| |||| ||||||||| ||||| ||||||| ||||| ||||||||||||||||||    
T  53673729 gtataaactgttttcataagctatcttggagagcttatgtaaataagctgaaaacaac 53673672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 177 - 229
Target Start/End: Original strand, 35743286 - 35743338
Alignment:
Q  177 aactattttcataaactatcatggagagtttatgaaaataagctgaaaacaac 229  Q
    ||||| ||||||||||||||||| |||||||||| ||||||| || |||||||    
T  35743286 aactactttcataaactatcatgaagagtttatggaaataagttggaaacaac 35743338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 179 - 227
Target Start/End: Original strand, 51630117 - 51630165
Alignment:
Q  179 ctattttcataaactatcatggagagtttatgaaaataagctgaaaaca 227  Q
    |||||||||||| ||||| || ||| |||||||||||||||||||||||    
T  51630117 ctattttcataagctatcttgaagaatttatgaaaataagctgaaaaca 51630165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 182 - 229
Target Start/End: Complemental strand, 7694071 - 7694024
Alignment:
Q  182 ttttcataaactatcatggagagtttatgaaaataagctgaaaacaac 229  Q
    |||||||||  |||| ||||||||||||| ||||||||||||||||||    
T  7694071 ttttcataagttatcctggagagtttatggaaataagctgaaaacaac 7694024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 177 - 228
Target Start/End: Original strand, 47970300 - 47970351
Alignment:
Q  177 aactattttcataaactatcatggagagtttatgaaaataagctgaaaacaa 228  Q
    ||||||||||| |  ||||||||||||| ||||| |||||||||||||||||    
T  47970300 aactattttcaaattctatcatggagagcttatgcaaataagctgaaaacaa 47970351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 177 - 226
Target Start/End: Original strand, 6853229 - 6853278
Alignment:
Q  177 aactattttcataaactatcatggagagtttatgaaaataagctgaaaac 226  Q
    |||||| ||||||| |||||||||||| || |||||||||| ||||||||    
T  6853229 aactatgttcataagctatcatggagacttcatgaaaataatctgaaaac 6853278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 182 - 227
Target Start/End: Original strand, 11802543 - 11802588
Alignment:
Q  182 ttttcataaactatcatggagagtttatgaaaataagctgaaaaca 227  Q
    ||||||||| |||| |||||||| |||||| |||||||||||||||    
T  11802543 ttttcataagctattatggagagcttatgagaataagctgaaaaca 11802588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 177 - 226
Target Start/End: Original strand, 18011875 - 18011924
Alignment:
Q  177 aactattttcataaactatcatggagagtttatgaaaataagctgaaaac 226  Q
    |||| ||||||||| ||||| || |||||||||||||||||||| |||||    
T  18011875 aactgttttcataagctatcttgaagagtttatgaaaataagctaaaaac 18011924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 177 - 229
Target Start/End: Complemental strand, 18628609 - 18628557
Alignment:
Q  177 aactattttcataaactatcatggagagtttatgaaaataagctgaaaacaac 229  Q
    |||| |||||||||  |||| ||||||| ||||| ||||||||||||||||||    
T  18628609 aactgttttcataagttatcttggagagcttatggaaataagctgaaaacaac 18628557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 177 - 229
Target Start/End: Complemental strand, 28300365 - 28300313
Alignment:
Q  177 aactattttcataaactatcatggagagtttatgaaaataagctgaaaacaac 229  Q
    |||||||||||||  ||||| || |||| ||||||||||||| ||||||||||    
T  28300365 aactattttcataggctatcttgaagagcttatgaaaataagttgaaaacaac 28300313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 183 - 227
Target Start/End: Original strand, 45927359 - 45927403
Alignment:
Q  183 tttcataaactatcatggagagtttatgaaaataagctgaaaaca 227  Q
    ||||| || |||| |||||||||||||| ||||||||||||||||    
T  45927359 tttcagaagctattatggagagtttatggaaataagctgaaaaca 45927403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 193 - 225
Target Start/End: Complemental strand, 51210505 - 51210473
Alignment:
Q  193 tatcatggagagtttatgaaaataagctgaaaa 225  Q
    |||| ||||||||||||||||||||||||||||    
T  51210505 tatcttggagagtttatgaaaataagctgaaaa 51210473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 179 - 227
Target Start/End: Complemental strand, 54325101 - 54325053
Alignment:
Q  179 ctattttcataaactatcatggagagtttatgaaaataagctgaaaaca 227  Q
    ||||||||| || ||||||||||||||||||| | |||| |||||||||    
T  54325101 ctattttcaaaagctatcatggagagtttatggagataaactgaaaaca 54325053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000001; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 179 - 228
Target Start/End: Original strand, 41817174 - 41817223
Alignment:
Q  179 ctattttcataaactatcatggagagtttatgaaaataagctgaaaacaa 228  Q
    |||||||||||||||||| ||||||| ||||| |||||||||||||||||    
T  41817174 ctattttcataaactatcctggagagcttatggaaataagctgaaaacaa 41817223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 182 - 229
Target Start/End: Complemental strand, 35379077 - 35379030
Alignment:
Q  182 ttttcataaactatcatggagagtttatgaaaataagctgaaaacaac 229  Q
    ||||||||| ||||| ||||||| ||||||||||||||||||||||||    
T  35379077 ttttcataagctatcttggagagcttatgaaaataagctgaaaacaac 35379030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 177 - 225
Target Start/End: Complemental strand, 33319878 - 33319830
Alignment:
Q  177 aactattttcataaactatcatggagagtttatgaaaataagctgaaaa 225  Q
    |||| ||||||||||||||| ||||||  ||||||||||||||||||||    
T  33319878 aactgttttcataaactatcttggagaacttatgaaaataagctgaaaa 33319830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 183 - 229
Target Start/End: Original strand, 11488287 - 11488333
Alignment:
Q  183 tttcataaactatcatggagagtttatgaaaataagctgaaaacaac 229  Q
    |||||||| ||||| ||||||| ||||| ||||||||||||||||||    
T  11488287 tttcataagctatcctggagagattatgcaaataagctgaaaacaac 11488333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 182 - 228
Target Start/End: Original strand, 15977994 - 15978040
Alignment:
Q  182 ttttcataaactatcatggagagtttatgaaaataagctgaaaacaa 228  Q
    ||||||||| ||||  ||||||| |||||||||||||||||||||||    
T  15977994 ttttcataagctattttggagagattatgaaaataagctgaaaacaa 15978040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 159 - 229
Target Start/End: Complemental strand, 32364815 - 32364745
Alignment:
Q  159 ttaaattgtttccgtatgaactattttcataaactatcatggagagtttatgaaaataagctgaaaacaac 229  Q
    ||||||||||| ||||| | || ||| | ||||||||| | ||||  ||||||||||||||||||||||||    
T  32364815 ttaaattgttttcgtataagctgtttacgtaaactatcttagagatcttatgaaaataagctgaaaacaac 32364745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 179 - 229
Target Start/End: Original strand, 44443327 - 44443377
Alignment:
Q  179 ctattttcataaactatcatggagagtttatgaaaataagctgaaaacaac 229  Q
    |||||||||||| ||||| | |||||  |||||||||||||||||||||||    
T  44443327 ctattttcataagctatctttgagagcatatgaaaataagctgaaaacaac 44443377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 177 - 226
Target Start/End: Complemental strand, 3067445 - 3067396
Alignment:
Q  177 aactattttcataaactatcatggagagtttatgaaaataagctgaaaac 226  Q
    |||| ||||||||| ||||| || |||||||||||||||||||| |||||    
T  3067445 aactgttttcataagctatcttgaagagtttatgaaaataagctaaaaac 3067396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 182 - 227
Target Start/End: Complemental strand, 27699590 - 27699545
Alignment:
Q  182 ttttcataaactatcatggagagtttatgaaaataagctgaaaaca 227  Q
    |||||||||||||||||||||| |  ||| ||||||||||||||||    
T  27699590 ttttcataaactatcatggagaatcgatggaaataagctgaaaaca 27699545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 177 - 229
Target Start/End: Complemental strand, 8187519 - 8187467
Alignment:
Q  177 aactattttcataaactatcatggagagtttatgaaaataagctgaaaacaac 229  Q
    |||| ||||||||| ||| ||||||||| ||||| |||||| |||||||||||    
T  8187519 aactgttttcataagctaccatggagagattatggaaataacctgaaaacaac 8187467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 182 - 226
Target Start/End: Original strand, 24097817 - 24097861
Alignment:
Q  182 ttttcataaactatcatggagagtttatgaaaataagctgaaaac 226  Q
    |||||||||  |||| ||||||| |||||||||||||||||||||    
T  24097817 ttttcataagttatcctggagagcttatgaaaataagctgaaaac 24097861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 229
Target Start/End: Original strand, 27288631 - 27288687
Alignment:
Q  173 tatgaactattttcataaactatcatggagagtttatgaaaataagctgaaaacaac 229  Q
    ||||| || |||||||||  ||||||| |||||||| | ||||||||||||||||||    
T  27288631 tatgatctgttttcataagttatcatgtagagtttacggaaataagctgaaaacaac 27288687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.000000000005; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 181 - 229
Target Start/End: Complemental strand, 25869328 - 25869280
Alignment:
Q  181 attttcataaactatcatggagagtttatgaaaataagctgaaaacaac 229  Q
    |||||||||  ||||||||||||||||||| ||||||||||||||||||    
T  25869328 attttcataggctatcatggagagtttatggaaataagctgaaaacaac 25869280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 182 - 229
Target Start/End: Complemental strand, 11569518 - 11569471
Alignment:
Q  182 ttttcataaactatcatggagagtttatgaaaataagctgaaaacaac 229  Q
    ||||||||| ||||||||||||| || |||||||||||||||||||||    
T  11569518 ttttcataagctatcatggagagattttgaaaataagctgaaaacaac 11569471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 180 - 229
Target Start/End: Complemental strand, 42215145 - 42215096
Alignment:
Q  180 tattttcataaactatcatggagagtttatgaaaataagctgaaaacaac 229  Q
    ||||||||||| ||||| ||||||| ||||| ||||||||||||||||||    
T  42215145 tattttcataagctatcttggagagcttatgtaaataagctgaaaacaac 42215096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 177 - 224
Target Start/End: Original strand, 11494150 - 11494197
Alignment:
Q  177 aactattttcataaactatcatggagagtttatgaaaataagctgaaa 224  Q
    |||||||||||||| ||||| || |||| |||||||||||||||||||    
T  11494150 aactattttcataagctatcttgaagagcttatgaaaataagctgaaa 11494197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 182 - 225
Target Start/End: Original strand, 27028840 - 27028883
Alignment:
Q  182 ttttcataaactatcatggagagtttatgaaaataagctgaaaa 225  Q
    ||||||||| ||||| ||||||| ||||||||||||||||||||    
T  27028840 ttttcataagctatcttggagagcttatgaaaataagctgaaaa 27028883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 182 - 229
Target Start/End: Complemental strand, 28769400 - 28769353
Alignment:
Q  182 ttttcataaactatcatggagagtttatgaaaataagctgaaaacaac 229  Q
    ||||||||| ||||  ||||||||||||| ||||||||||||||||||    
T  28769400 ttttcataagctattttggagagtttatggaaataagctgaaaacaac 28769353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 182 - 229
Target Start/End: Complemental strand, 30277306 - 30277259
Alignment:
Q  182 ttttcataaactatcatggagagtttatgaaaataagctgaaaacaac 229  Q
    ||||||||| ||||| | ||||||||||| ||||||||||||||||||    
T  30277306 ttttcataagctatcctagagagtttatggaaataagctgaaaacaac 30277259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 177 - 227
Target Start/End: Original strand, 20672754 - 20672804
Alignment:
Q  177 aactattttcataaactatcatggagagtttatgaaaataagctgaaaaca 227  Q
    |||| |||| |||| ||||| ||||||| ||||||||||||||||||||||    
T  20672754 aactgtttttataagctatcctggagagcttatgaaaataagctgaaaaca 20672804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 185 - 227
Target Start/End: Complemental strand, 42370419 - 42370377
Alignment:
Q  185 tcataaactatcatggagagtttatgaaaataagctgaaaaca 227  Q
    |||||| |||||||| |||||||||| ||||||||||||||||    
T  42370419 tcataagctatcatgaagagtttatggaaataagctgaaaaca 42370377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 177 - 229
Target Start/End: Complemental strand, 779127 - 779075
Alignment:
Q  177 aactattttcataaactatcatggagagtttatgaaaataagctgaaaacaac 229  Q
    |||| ||||||||||||||| |||||||| ||  |||||||| ||||||||||    
T  779127 aactgttttcataaactatcttggagagtgtaccaaaataagatgaaaacaac 779075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 182 - 226
Target Start/End: Complemental strand, 9956875 - 9956831
Alignment:
Q  182 ttttcataaactatcatggagagtttatgaaaataagctgaaaac 226  Q
    ||||||||| ||||| ||||||  |||||||||||||||||||||    
T  9956875 ttttcataatctatcttggagaacttatgaaaataagctgaaaac 9956831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 183 - 227
Target Start/End: Original strand, 11795102 - 11795146
Alignment:
Q  183 tttcataaactatcatggagagtttatgaaaataagctgaaaaca 227  Q
    |||||||| |||| |||||||| ||||| ||||||||||||||||    
T  11795102 tttcataagctattatggagagcttatggaaataagctgaaaaca 11795146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 179 - 227
Target Start/End: Complemental strand, 33714300 - 33714252
Alignment:
Q  179 ctattttcataaactatcatggagagtttatgaaaataagctgaaaaca 227  Q
    |||||||||||| |||||  |||||| |||| |||||||||||||||||    
T  33714300 ctattttcataagctatctgggagagcttataaaaataagctgaaaaca 33714252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 177 - 225
Target Start/End: Complemental strand, 36643959 - 36643911
Alignment:
Q  177 aactattttcataaactatcatggagagtttatgaaaataagctgaaaa 225  Q
    |||||||||||||| ||||||||||||   |||| ||||||||||||||    
T  36643959 aactattttcataagctatcatggagaacgtatggaaataagctgaaaa 36643911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 182 - 226
Target Start/End: Complemental strand, 39881813 - 39881769
Alignment:
Q  182 ttttcataaactatcatggagagtttatgaaaataagctgaaaac 226  Q
    |||| |||| ||||||||||||| ||||| |||||||||||||||    
T  39881813 tttttataagctatcatggagagcttatggaaataagctgaaaac 39881769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 179 - 227
Target Start/End: Complemental strand, 42215370 - 42215322
Alignment:
Q  179 ctattttcataaactatcatggagagtttatgaaaataagctgaaaaca 227  Q
    |||||||||||  ||||| ||||||| ||||| ||||||||||||||||    
T  42215370 ctattttcatatgctatcctggagagcttatgtaaataagctgaaaaca 42215322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.000000000005; HSPs: 29)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 177 - 229
Target Start/End: Complemental strand, 4700132 - 4700080
Alignment:
Q  177 aactattttcataaactatcatggagagtttatgaaaataagctgaaaacaac 229  Q
    |||| |||| |||||||||| ||||||| ||||||||||||||||||||||||    
T  4700132 aactgtttttataaactatcctggagagcttatgaaaataagctgaaaacaac 4700080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 179 - 229
Target Start/End: Complemental strand, 14630030 - 14629980
Alignment:
Q  179 ctattttcataaactatcatggagagtttatgaaaataagctgaaaacaac 229  Q
    |||||||||||| ||||| |||||| |||||| ||||||||||||||||||    
T  14630030 ctattttcataagctatcttggagactttatggaaataagctgaaaacaac 14629980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 183 - 229
Target Start/End: Complemental strand, 35590952 - 35590906
Alignment:
Q  183 tttcataaactatcatggagagtttatgaaaataagctgaaaacaac 229  Q
    |||||||| ||||||||||||| ||||| ||||||||||||||||||    
T  35590952 tttcataagctatcatggagagcttatggaaataagctgaaaacaac 35590906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 182 - 227
Target Start/End: Original strand, 45975699 - 45975744
Alignment:
Q  182 ttttcataaactatcatggagagtttatgaaaataagctgaaaaca 227  Q
    ||||||||| ||||| |||||| |||||||||||||||||||||||    
T  45975699 ttttcataagctatcttggagaatttatgaaaataagctgaaaaca 45975744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 179 - 227
Target Start/End: Original strand, 6292499 - 6292547
Alignment:
Q  179 ctattttcataaactatcatggagagtttatgaaaataagctgaaaaca 227  Q
    |||||||| ||||||||  ||||||| ||||||||||||||||||||||    
T  6292499 ctattttcgtaaactattttggagagcttatgaaaataagctgaaaaca 6292547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 177 - 225
Target Start/End: Complemental strand, 41195259 - 41195211
Alignment:
Q  177 aactattttcataaactatcatggagagtttatgaaaataagctgaaaa 225  Q
    |||| ||||||||||||||| ||||||  ||||||||||||||||||||    
T  41195259 aactgttttcataaactatcttggagaacttatgaaaataagctgaaaa 41195211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 182 - 226
Target Start/End: Original strand, 52190138 - 52190182
Alignment:
Q  182 ttttcataaactatcatggagagtttatgaaaataagctgaaaac 226  Q
    ||||||||| ||||||||||||| ||| |||||||||||||||||    
T  52190138 ttttcataagctatcatggagagcttacgaaaataagctgaaaac 52190182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 182 - 229
Target Start/End: Complemental strand, 12477348 - 12477301
Alignment:
Q  182 ttttcataaactatcatggagagtttatgaaaataagctgaaaacaac 229  Q
    |||| |||| |||||||||||||| |||| ||||||||||||||||||    
T  12477348 ttttaataagctatcatggagagtgtatggaaataagctgaaaacaac 12477301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 182 - 229
Target Start/End: Original strand, 25479590 - 25479637
Alignment:
Q  182 ttttcataaactatcatggagagtttatgaaaataagctgaaaacaac 229  Q
    ||||||||| ||||| | ||||| ||||||||||||||||||||||||    
T  25479590 ttttcataagctatcctagagagcttatgaaaataagctgaaaacaac 25479637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 182 - 229
Target Start/End: Original strand, 27140487 - 27140534
Alignment:
Q  182 ttttcataaactatcatggagagtttatgaaaataagctgaaaacaac 229  Q
    |||| |||| ||||||||||||| ||||| ||||||||||||||||||    
T  27140487 tttttataagctatcatggagagcttatgcaaataagctgaaaacaac 27140534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 182 - 229
Target Start/End: Original strand, 45205077 - 45205124
Alignment:
Q  182 ttttcataaactatcatggagagtttatgaaaataagctgaaaacaac 229  Q
    ||||||||| |||||||| |||||| ||| ||||||||||||||||||    
T  45205077 ttttcataagctatcatgtagagttcatggaaataagctgaaaacaac 45205124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 182 - 225
Target Start/End: Complemental strand, 51695556 - 51695513
Alignment:
Q  182 ttttcataaactatcatggagagtttatgaaaataagctgaaaa 225  Q
    ||||||||| ||||| |||||| |||||||||||||||||||||    
T  51695556 ttttcataagctatcttggagaatttatgaaaataagctgaaaa 51695513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 147 - 229
Target Start/End: Original strand, 15784303 - 15784385
Alignment:
Q  147 ggtaaaattaagttaaattgtttccgtatgaactattttcataaactatcatggagagtttatgaaaataagctgaaaacaac 229  Q
    |||||||| |||||||||||||| ||||| | ||  ||| |||| ||||| ||||||  || |||||||||||| ||||||||    
T  15784303 ggtaaaataaagttaaattgttttcgtataagctggttttataagctatcttggagaacttgtgaaaataagctaaaaacaac 15784385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 182 - 228
Target Start/End: Complemental strand, 27887179 - 27887133
Alignment:
Q  182 ttttcataaactatcatggagagtttatgaaaataagctgaaaacaa 228  Q
    |||||||||||||||||||||||  ||| |||||||||| |||||||    
T  27887179 ttttcataaactatcatggagagcatataaaaataagctaaaaacaa 27887133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 192 - 225
Target Start/End: Original strand, 601060 - 601093
Alignment:
Q  192 ctatcatggagagtttatgaaaataagctgaaaa 225  Q
    ||||| ||||||||||||||||||||||||||||    
T  601060 ctatcctggagagtttatgaaaataagctgaaaa 601093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 182 - 227
Target Start/End: Original strand, 5047155 - 5047200
Alignment:
Q  182 ttttcataaactatcatggagagtttatgaaaataagctgaaaaca 227  Q
    ||||||||| |||||||| |||| ||||| ||||||||||||||||    
T  5047155 ttttcataagctatcatgaagagcttatggaaataagctgaaaaca 5047200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 186 - 227
Target Start/End: Original strand, 7472324 - 7472365
Alignment:
Q  186 cataaactatcatggagagtttatgaaaataagctgaaaaca 227  Q
    ||||| ||||| ||||||| ||||||||||||||||||||||    
T  7472324 cataagctatcttggagagcttatgaaaataagctgaaaaca 7472365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 179 - 224
Target Start/End: Original strand, 10439692 - 10439737
Alignment:
Q  179 ctattttcataaactatcatggagagtttatgaaaataagctgaaa 224  Q
    |||| |||| |||||||| ||||||||||||| |||||||||||||    
T  10439692 ctatattcaaaaactatcctggagagtttatggaaataagctgaaa 10439737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 192 - 229
Target Start/End: Original strand, 15361059 - 15361096
Alignment:
Q  192 ctatcatggagagtttatgaaaataagctgaaaacaac 229  Q
    ||||| ||||||| ||||||||||||||||||||||||    
T  15361059 ctatcctggagagcttatgaaaataagctgaaaacaac 15361096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 187 - 224
Target Start/End: Original strand, 24702254 - 24702291
Alignment:
Q  187 ataaactatcatggagagtttatgaaaataagctgaaa 224  Q
    |||||||||||||||||| ||||||||||||| |||||    
T  24702254 ataaactatcatggagagcttatgaaaataaggtgaaa 24702291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 184 - 229
Target Start/End: Complemental strand, 26462000 - 26461955
Alignment:
Q  184 ttcataaactatcatggagagtttatgaaaataagctgaaaacaac 229  Q
    ||||||| ||||| || |||| ||||||||||||||||||||||||    
T  26462000 ttcataagctatcctgcagagcttatgaaaataagctgaaaacaac 26461955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 186 - 227
Target Start/End: Original strand, 35925703 - 35925744
Alignment:
Q  186 cataaactatcatggagagtttatgaaaataagctgaaaaca 227  Q
    ||||| ||||||||||||||||||| ||||||| ||||||||    
T  35925703 cataagctatcatggagagtttatggaaataagttgaaaaca 35925744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 182 - 227
Target Start/End: Original strand, 37240851 - 37240896
Alignment:
Q  182 ttttcataaactatcatggagagtttatgaaaataagctgaaaaca 227  Q
    ||||||||||||||| | ||| ||||||||||||||||||| ||||    
T  37240851 ttttcataaactatccttgagggtttatgaaaataagctgataaca 37240896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 179 - 228
Target Start/End: Original strand, 43113117 - 43113166
Alignment:
Q  179 ctattttcataaactatcatggagagtttatgaaaataagctgaaaacaa 228  Q
    |||| ||||||| ||||||||||||| ||||||| ||||||| |||||||    
T  43113117 ctatattcataagctatcatggagaggttatgaacataagctcaaaacaa 43113166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 179 - 227
Target Start/End: Original strand, 2294917 - 2294965
Alignment:
Q  179 ctattttcataaactatcatggagagtttatgaaaataagctgaaaaca 227  Q
    |||||||||||||||||| ||||||  ||| ||||||||| ||||||||    
T  2294917 ctattttcataaactatcttggagaacttacgaaaataaggtgaaaaca 2294965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 177 - 229
Target Start/End: Original strand, 6279403 - 6279455
Alignment:
Q  177 aactattttcataaactatcatggagagtttatgaaaataagctgaaaacaac 229  Q
    |||||||||||||| ||||| | ||||| ||||| ||||| ||||||||||||    
T  6279403 aactattttcataagctatcctagagagcttatggaaatacgctgaaaacaac 6279455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 177 - 229
Target Start/End: Original strand, 11211122 - 11211174
Alignment:
Q  177 aactattttcataaactatcatggagagtttatgaaaataagctgaaaacaac 229  Q
    |||||||||||||| || | |||||||||||||| ||||||| | ||||||||    
T  11211122 aactattttcataagctgttatggagagtttatggaaataagttaaaaacaac 11211174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 177 - 229
Target Start/End: Complemental strand, 34179938 - 34179886
Alignment:
Q  177 aactattttcataaactatcatggagagtttatgaaaataagctgaaaacaac 229  Q
    |||| ||||||||||||||| || | |||||||| ||||| ||||||||||||    
T  34179938 aactgttttcataaactatcctgaaaagtttatggaaatacgctgaaaacaac 34179886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 181 - 225
Target Start/End: Original strand, 43338124 - 43338168
Alignment:
Q  181 attttcataaactatcatggagagtttatgaaaataagctgaaaa 225  Q
    |||||||||| ||| ||||||||| ||||||||||| ||||||||    
T  43338124 attttcataagctaacatggagagcttatgaaaataggctgaaaa 43338168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 182 - 229
Target Start/End: Complemental strand, 10272492 - 10272445
Alignment:
Q  182 ttttcataaactatcatggagagtttatgaaaataagctgaaaacaac 229  Q
    ||||||||| | ||| ||||||||||||||||||||||||||||||||    
T  10272492 ttttcataagccatcttggagagtttatgaaaataagctgaaaacaac 10272445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 182 - 227
Target Start/End: Original strand, 7984978 - 7985023
Alignment:
Q  182 ttttcataaactatcatggagagtttatgaaaataagctgaaaaca 227  Q
    ||||||||| ||||| |||||| |||||||||||||||||||||||    
T  7984978 ttttcataagctatcttggagaatttatgaaaataagctgaaaaca 7985023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 182 - 227
Target Start/End: Complemental strand, 17258944 - 17258899
Alignment:
Q  182 ttttcataaactatcatggagagtttatgaaaataagctgaaaaca 227  Q
    ||||||||||||||| || |||| ||||||||||||||||||||||    
T  17258944 ttttcataaactatcctgaagagcttatgaaaataagctgaaaaca 17258899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 180 - 227
Target Start/End: Complemental strand, 10125781 - 10125734
Alignment:
Q  180 tattttcataaactatcatggagagtttatgaaaataagctgaaaaca 227  Q
    |||||||||||  || ||||||||| ||||||||||||||||||||||    
T  10125781 tattttcataagttaccatggagagcttatgaaaataagctgaaaaca 10125734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 182 - 227
Target Start/End: Complemental strand, 4014485 - 4014440
Alignment:
Q  182 ttttcataaactatcatggagagtttatgaaaataagctgaaaaca 227  Q
    ||||||||| ||||| ||||||  ||||||||||||||||||||||    
T  4014485 ttttcataagctatcttggagaacttatgaaaataagctgaaaaca 4014440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 182 - 227
Target Start/End: Original strand, 7674657 - 7674702
Alignment:
Q  182 ttttcataaactatcatggagagtttatgaaaataagctgaaaaca 227  Q
    ||||||||| ||||| |||||| ||| |||||||||||||||||||    
T  7674657 ttttcataagctatcttggagaatttgtgaaaataagctgaaaaca 7674702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 182 - 227
Target Start/End: Original strand, 36318783 - 36318828
Alignment:
Q  182 ttttcataaactatcatggagagtttatgaaaataagctgaaaaca 227  Q
    ||||||||| ||||| |||||| |||||| ||||||||||||||||    
T  36318783 ttttcataagctatcttggagaatttatgtaaataagctgaaaaca 36318828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 177 - 229
Target Start/End: Complemental strand, 7319074 - 7319022
Alignment:
Q  177 aactattttcataaactatcatggagagtttatgaaaataagctgaaaacaac 229  Q
    |||| ||||||||| ||||| ||||||  ||||||||||||||||| ||||||    
T  7319074 aactgttttcataagctatcttggagaacttatgaaaataagctgagaacaac 7319022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 195 - 227
Target Start/End: Original strand, 8089303 - 8089335
Alignment:
Q  195 tcatggagagtttatgaaaataagctgaaaaca 227  Q
    |||||||||| ||||||||||||||||||||||    
T  8089303 tcatggagagcttatgaaaataagctgaaaaca 8089335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 182 - 226
Target Start/End: Original strand, 17368685 - 17368729
Alignment:
Q  182 ttttcataaactatcatggagagtttatgaaaataagctgaaaac 226  Q
    ||||||||| ||||| ||||||| ||||| |||||||||||||||    
T  17368685 ttttcataagctatcttggagaggttatggaaataagctgaaaac 17368729  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000003; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 182 - 227
Target Start/End: Original strand, 1497990 - 1498035
Alignment:
Q  182 ttttcataaactatcatggagagtttatgaaaataagctgaaaaca 227  Q
    ||||||||||||||| ||||||| ||||||||||||| ||||||||    
T  1497990 ttttcataaactatcttggagagcttatgaaaataaggtgaaaaca 1498035  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 184 - 228
Target Start/End: Original strand, 34939755 - 34939799
Alignment:
Q  184 ttcataaactatcatggagagtttatgaaaataagctgaaaacaa 228  Q
    ||||||| ||||| ||||||||||||| |||||||||||||||||    
T  34939755 ttcataagctatcctggagagtttatggaaataagctgaaaacaa 34939799  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 182 - 228
Target Start/End: Original strand, 3528812 - 3528858
Alignment:
Q  182 ttttcataaactatcatggagagtttatgaaaataagctgaaaacaa 228  Q
    ||||||| ||||||| ||||||| ||||||||||||| |||||||||    
T  3528812 ttttcatgaactatcttggagagcttatgaaaataagatgaaaacaa 3528858  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 149 - 228
Target Start/End: Complemental strand, 24836300 - 24836217
Alignment:
Q  149 taaaattaagttaaattgtttccgtatgaactat----tttcataaactatcatggagagtttatgaaaataagctgaaaacaa 228  Q
    |||||| |||| ||||||||| ||||| ||||||    |||| ||| ||||||||||||| ||||| |||||||||| ||||||    
T  24836300 taaaataaagtcaaattgttttcgtataaactataagttttcgtaagctatcatggagagcttatggaaataagctggaaacaa 24836217  T

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Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 182 - 227
Target Start/End: Complemental strand, 835310 - 835265
Alignment:
Q  182 ttttcataaactatcatggagagtttatgaaaataagctgaaaaca 227  Q
    ||||||||| ||||| ||||||  ||||||||||||||||||||||    
T  835310 ttttcataagctatcttggagaacttatgaaaataagctgaaaaca 835265  T

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Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 192 - 225
Target Start/End: Original strand, 12230380 - 12230413
Alignment:
Q  192 ctatcatggagagtttatgaaaataagctgaaaa 225  Q
    ||||||||||||| ||||||||||||||||||||    
T  12230380 ctatcatggagagcttatgaaaataagctgaaaa 12230413  T

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Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 182 - 227
Target Start/End: Complemental strand, 33911343 - 33911298
Alignment:
Q  182 ttttcataaactatcatggagagtttatgaaaataagctgaaaaca 227  Q
    ||||||||||||||| || | ||||| |||||||||||||||||||    
T  33911343 ttttcataaactatcctgaaaagtttgtgaaaataagctgaaaaca 33911298  T

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Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 181 - 229
Target Start/End: Complemental strand, 17241314 - 17241266
Alignment:
Q  181 attttcataaactatcatggagagtttatgaaaataagctgaaaacaac 229  Q
    |||||||| | ||||| ||||||||||||| ||||||| ||||||||||    
T  17241314 attttcattagctatcttggagagtttatggaaataagttgaaaacaac 17241266  T

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Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 179 - 223
Target Start/End: Complemental strand, 24974480 - 24974436
Alignment:
Q  179 ctattttcataaactatcatggagagtttatgaaaataagctgaa 223  Q
    |||||||||||||||||  ||||||||||||| ||||||| ||||    
T  24974480 ctattttcataaactatgttggagagtttatggaaataagttgaa 24974436  T

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Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 182 - 226
Target Start/End: Original strand, 26694887 - 26694931
Alignment:
Q  182 ttttcataaactatcatggagagtttatgaaaataagctgaaaac 226  Q
    ||||||||||||||| || |||  |||||||||||||||||||||    
T  26694887 ttttcataaactatcttgaagaacttatgaaaataagctgaaaac 26694931  T

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Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 177 - 229
Target Start/End: Complemental strand, 28088288 - 28088236
Alignment:
Q  177 aactattttcataaactatcatggagagtttatgaaaataagctgaaaacaac 229  Q
    |||| ||||||||| ||||||||||||| | ||| ||||||||| ||||||||    
T  28088288 aactgttttcataagctatcatggagagctcatggaaataagctcaaaacaac 28088236  T

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Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 180 - 224
Target Start/End: Complemental strand, 29837147 - 29837103
Alignment:
Q  180 tattttcataaactatcatggagagtttatgaaaataagctgaaa 224  Q
    ||||||||||||||||| || |||| |||||||||| ||||||||    
T  29837147 tattttcataaactatcctgaagagcttatgaaaattagctgaaa 29837103  T

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Target: scaffold0011 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 180 - 229
Target Start/End: Original strand, 14617 - 14666
Alignment:
Q  180 tattttcataaactatcatggagagtttatgaaaataagctgaaaacaac 229  Q
    |||||| ||||| |||| || ||||||||| |||||||||||||||||||    
T  14617 tatttttataaaatatcttgaagagtttataaaaataagctgaaaacaac 14666  T

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Target: scaffold0024 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 149 - 217
Target Start/End: Complemental strand, 21379 - 21311
Alignment:
Q  149 taaaattaagttaaattgtttccgtatgaactattttcataaactatcatggagagtttatgaaaataa 217  Q
    |||||| |||||||||||||| ||||| | || ||||||||| ||||  ||||||  ||||||||||||    
T  21379 taaaataaagttaaattgttttcgtataagctgttttcataagctatattggagaaattatgaaaataa 21311  T

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