View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6429_low_48 (Length: 228)
Name: NF6429_low_48
Description: NF6429
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6429_low_48 |
 | |
|
| [»] chr2 (1 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 6 - 228
Target Start/End: Complemental strand, 27873378 - 27873156
Alignment:
| Q |
6 |
acaaagtacgatgattcaatttccacatagtccataaacaaaaaagtgaaatttcaattcctattaatcattgtgtacactttttccatcttttattttt |
105 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27873378 |
acaaagtacgatgattcaatttccacatagtccataaacaaaaaagtgaaatttcaattcctattaatcattgtgtacactttttccatcttttattttt |
27873279 |
T |
|
| Q |
106 |
taaaacctaagagaaaatttatattttcccgggaaacaaaaggaaaatacctgaaggtcaagacgtttttcccagccattaggaacctgtaaatcaagat |
205 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27873278 |
taaaacctaagagaaaatttatattttcccgggaaacaaaaggaaaatacctgaaggtcaagacgtttttcccagccattaggaacctgtaaatcaagat |
27873179 |
T |
|
| Q |
206 |
ccaattcttgtgattcaattgaa |
228 |
Q |
| |
|
|||||||||| |||||||||||| |
|
|
| T |
27873178 |
ccaattcttgggattcaattgaa |
27873156 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University