View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6429_low_50 (Length: 215)
Name: NF6429_low_50
Description: NF6429
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6429_low_50 |
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Alignment Details
Target: chr3 (Bit Score: 141; Significance: 4e-74; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 141; E-Value: 4e-74
Query Start/End: Original strand, 46 - 194
Target Start/End: Original strand, 26003171 - 26003319
Alignment:
| Q |
46 |
tcatcatgactttttaatcttagcttcagatggattatgggaaaaggtatagaacttgaccaattaattgcgatgttaattataaattctttcaagaaat |
145 |
Q |
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| T |
26003171 |
tcatcatgacttgttaatcttagcttcagatggattatgggaaaaggtataggacttgaccaattaattgcgatgttaattataaattctttcaagaaat |
26003270 |
T |
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| Q |
146 |
cacagttcaactatagtttagtcttaacttagtaactgattaagtttct |
194 |
Q |
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| T |
26003271 |
cacagttcaactatagtttagtcttaacttagtaactgattaagtttct |
26003319 |
T |
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Target: chr3; HSP #2
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 46 - 122
Target Start/End: Original strand, 26017917 - 26017993
Alignment:
| Q |
46 |
tcatcatgactttttaatcttagcttcagatggattatgggaaaaggtatagaacttgaccaattaattgcgatgtt |
122 |
Q |
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| T |
26017917 |
tcatcatgactttttaatcttagcttcagatggattatgggaaaaggtataggacttcatcaattaattgcaatgtt |
26017993 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 50 - 94
Target Start/End: Original strand, 30374427 - 30374471
Alignment:
| Q |
50 |
catgactttttaatcttagcttcagatggattatgggaaaaggta |
94 |
Q |
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| T |
30374427 |
catgacttgttaatattagcttcagatggattatgggataaggta |
30374471 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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