View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6429_low_8 (Length: 502)
Name: NF6429_low_8
Description: NF6429
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6429_low_8 |
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Alignment Details
Target: chr8 (Bit Score: 370; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 19 - 489
Target Start/End: Complemental strand, 44574134 - 44573672
Alignment:
| Q |
19 |
cagccatagtgaatggctgctcacggttcctaacaaaccagatgcaattgattttagcttcattcccattacctctcttcttaaaggtgctcctggaagg |
118 |
Q |
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| T |
44574134 |
cagccatagtgaatggctgctcacggttcctaacaaaccagatgcaattgattttagcttcattcccattacctctcttcttaaaggtgcttctggaagg |
44574035 |
T |
|
| Q |
119 |
ggattcctctcccatgctatcaacctctatcttcgatgtaagtttaa---------tctctaaatggataaatactttattgacttccaagcacacacac |
209 |
Q |
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| T |
44574034 |
ggattcctctcccatgctatcaacctctatcttcgatgtaagtttaaataaattaatctctaaatggataaatactttattgacttccaagcacacacac |
44573935 |
T |
|
| Q |
210 |
tataatgtgaagaattaaattgatatgaaattcagataagccaccaatgtcagatttgtcatactttcttgactaccaaggatacaagatttgggctcct |
309 |
Q |
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| T |
44573934 |
----------ataattaaattgatatgaaattcagataagccaccaatgtcagatttgtcatactttcttgactaccaaggatacaagatttgggctcct |
44573845 |
T |
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| Q |
310 |
gttcacaatgatctacctcttggtccaactacaaacatatctactatttcaccttttctcactctcaatttgatgggtcccaaactttatgtaaatacag |
409 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44573844 |
gttcacaatgatctacctcttggtccaactacaaacatatctactatttcaccttttctcactctcaatttgatgggtcccaaactttatgtaaatacag |
44573745 |
T |
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| Q |
410 |
acaaggtaatgtatgtatgtatgttgattttcaaacccttcctcttcatataataataatagtattatactttaatttca |
489 |
Q |
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|||||||||||||||| ||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||| |
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| T |
44573744 |
acaaggtaatgtatgt----atgttgattttcaaagccttcctcttcat---ataataatagtattatactttaatttca |
44573672 |
T |
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