View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6429_low_9 (Length: 462)
Name: NF6429_low_9
Description: NF6429
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6429_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 387; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 1 - 435
Target Start/End: Complemental strand, 37430860 - 37430426
Alignment:
| Q |
1 |
tgaatgtaaatgtcttaatttatacacgaaacaagattaatttggaaattgtgatcataggaattgttctattaacgaattaaacactgtataggtaaag |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
37430860 |
tgaatgtaaatgtcttaatttatacacgaaacaagattaatttggaaattgtgatcataggaattattctattaacgaattaaacactgtataggtaaag |
37430761 |
T |
|
| Q |
101 |
cattaagatttgtcaaaccagaacaccagaaaagatttgtcaaaccaggacaggaaaacactaatagtccaatgcacaagacaagactaccacaatttca |
200 |
Q |
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| T |
37430760 |
cattaagatttgtcaaaccagaacaccagaaaagatttgtcaaaccaggacaggaaaacactaatagtccaatgcacaagacaagactaccacaatttca |
37430661 |
T |
|
| Q |
201 |
aatacaaagagaataagacatatatgcaatattcttttcccttattcattcttcttatcaactactatatgtttgcaatcaatgctttgtaggtcatgct |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||| ||||||||||||||| |||||||||||| |
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| T |
37430660 |
aatacaaagagaataagacatatatgcaatattcttttccctgattcattctgcttatcaactactatatggttgcaatcaatgcttagtaggtcatgct |
37430561 |
T |
|
| Q |
301 |
tctgcatctttcaaacctcttcataacctctatagatataggctaaaataatcaaatccaaaatcctaaacaagagagtataatttcctctaaatggggt |
400 |
Q |
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||||||||||||||||||||||||||| |||||||||| |||||||||||||||||| |||||||| || ||||||||||| ||||||||||||||||| |
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| T |
37430560 |
tctgcatctttcaaacctcttcataacatctatagatagaggctaaaataatcaaataaaaaatcctcaagaagagagtatagtttcctctaaatggggt |
37430461 |
T |
|
| Q |
401 |
ccttttgttttctatttccttatcttgcctttcac |
435 |
Q |
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| T |
37430460 |
ccttttgttttctatttccttatcttgcctttcac |
37430426 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 388 - 435
Target Start/End: Complemental strand, 37698509 - 37698462
Alignment:
| Q |
388 |
ctctaaatggggtccttttgttttctatttccttatcttgcctttcac |
435 |
Q |
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||||||||||||||||||| | ||||||| |||||| ||||||||||| |
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| T |
37698509 |
ctctaaatggggtccttttttattctattgccttattttgcctttcac |
37698462 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 41265766 - 41265808
Alignment:
| Q |
1 |
tgaatgtaaatgtcttaatttatacacgaaacaagattaattt |
43 |
Q |
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|||||||| ||||||||||||||||||| |||||||||||||| |
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| T |
41265766 |
tgaatgtatatgtcttaatttatacacggaacaagattaattt |
41265808 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 34260984 - 34261026
Alignment:
| Q |
1 |
tgaatgtaaatgtcttaatttatacacgaaacaagattaattt |
43 |
Q |
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|||||||| ||||||||||||||||||| ||||||||||||| |
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| T |
34260984 |
tgaatgtatatgtcttaatttatacacgggacaagattaattt |
34261026 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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