View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6430_high_2 (Length: 397)
Name: NF6430_high_2
Description: NF6430
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6430_high_2 |
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Alignment Details
Target: chr7 (Bit Score: 358; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 1 - 381
Target Start/End: Original strand, 27447424 - 27447805
Alignment:
| Q |
1 |
ttgaagaaggaggaggatgaacaacctcttccttgcactcctcctttttcactgagagaaaaggacagtcttgtttggctggtgttgggaaagagttgtc |
100 |
Q |
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| T |
27447424 |
ttgaagaaggaggaggatgaacaacctcttccttgcactcctcctttttcactgagagaaaaggacagtcttgtttggctggtgttgggaaagagttgtc |
27447523 |
T |
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| Q |
101 |
aaaactaagaaacatggaagagtgatcagtaggataatctactatgatctcagggttttgcaagattctacaagtatgatggcctgaataggttgtcctg |
200 |
Q |
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| T |
27447524 |
aaaactaagaaacatggaagagtgatcagtaggataatctactatgatctcagggttttgcaagattctacaagtatgatggcctgaataggttgtcctg |
27447623 |
T |
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| Q |
201 |
taaagaggtggatcctcttgaattctctggacttgttttattgctttgcaaccttgatcatttttgtgagtgcacctgtaatagttcctgcaaatcac-a |
299 |
Q |
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| T |
27447624 |
tgaagaggtggatcctcttgaattctttggacttgttttattgctttgcaaccttgatcatttttgtgagtgcatctgtaatagttcctgcaaatcacaa |
27447723 |
T |
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| Q |
300 |
taaatatatattcatttaggcccatagcatagaagagatatagaagtagaggaacttttttgtaataacattaagtcattaa |
381 |
Q |
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| T |
27447724 |
taaatatatattcatttaggcctatagcatagaagagatatagaagtagaggaacttttttgtaataacattaagtcattaa |
27447805 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 53 - 294
Target Start/End: Original strand, 27430229 - 27430470
Alignment:
| Q |
53 |
tgagagaaaaggacagtcttgtttggctggtgttgggaaagagttgtcaaaactaagaaacatggaagagtgatcagtaggataatctactatgatctca |
152 |
Q |
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| T |
27430229 |
tgagagaaaagggcaatcttgtttggctggtgttgggaaagagttgtcaaagctaaggaacatggaagactggtcacaaggagaatccattatgatctca |
27430328 |
T |
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| Q |
153 |
gggttttgcaagattctacaagtatgatggcctgaataggttgtcctgtaaagaggtggatcctcttgaattctctggacttgttttattgctttgcaac |
252 |
Q |
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| | |||||||||||||||||||||||||| | | |||||||| |||||||||||||||||||||||||| || ||||||||| |||||||||||| |
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| T |
27430329 |
gagctttgcaagattctacaagtatgatgggcatagtaggttgttttgtaaagaggtggatcctcttgaatttgttgcacttgttttgttgctttgcaac |
27430428 |
T |
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| Q |
253 |
cttgatcatttttgtgagtgcacctgtaatagttcctgcaaa |
294 |
Q |
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| T |
27430429 |
cttgatcatgtttgtgagtgcacctgtaatagttcctgcaaa |
27430470 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 27430147 - 27430201
Alignment:
| Q |
1 |
ttgaagaaggaggaggatgaacaacctcttccttgcactcctcctttttcactga |
55 |
Q |
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|||||||||||||||||||||||| |||||||||||| |||||| |||||||||| |
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| T |
27430147 |
ttgaagaaggaggaggatgaacaatctcttccttgcaatcctcccttttcactga |
27430201 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 215 - 292
Target Start/End: Complemental strand, 304083 - 304006
Alignment:
| Q |
215 |
ctcttgaattctctggacttgttttattgctttgcaaccttgatcatttttgtgagtgcacctgtaatagttcctgca |
292 |
Q |
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| T |
304083 |
ctcttgaattctctgcacctgtttggttgctttgcatctttgatctatcttgtgagtacacctgtagtagtccctgca |
304006 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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