View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6430_high_5 (Length: 242)
Name: NF6430_high_5
Description: NF6430
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6430_high_5 |
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| [»] chr7 (5 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 215; Significance: 1e-118; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 12 - 242
Target Start/End: Complemental strand, 3800696 - 3800466
Alignment:
| Q |
12 |
tcatcagggtatgcatagtttaccttgttgtcattactaggacgaacaacccaaagaaaaggcttgtcaagaagatcaagtcctagggctagttcattaa |
111 |
Q |
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|||| |||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3800696 |
tcattagggtatgtatagtttaccttattgtcattactaggacgaacaacccaaagaaaaggcttgtcaagaagatcaagtcctagggctagttcattaa |
3800597 |
T |
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| Q |
112 |
attggttttggtccattactaccaagctaccaaaggaaacatatatgacagattgaggtgcttgtttatctaaccaatctaagcaagttgtgtcttcttg |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
3800596 |
attggttttggtccattactaccaagctaccaaaggaaacatatatgacagattgaggtgcttgtttatctaaccaatctaagcaagttgagtcttcttg |
3800497 |
T |
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| Q |
212 |
ccataatgaacttttgttgttgttactttcc |
242 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
3800496 |
ccataatgaacttttgttgttgttactttcc |
3800466 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 12 - 242
Target Start/End: Original strand, 3789411 - 3789641
Alignment:
| Q |
12 |
tcatcagggtatgcatagtttaccttgttgtcattactaggacgaacaacccaaagaaaaggcttgtcaagaagatcaagtcctagggctagttcattaa |
111 |
Q |
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|||| |||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3789411 |
tcattagggtatgtatagtttaccttattgtcattactaggacgaacaacccaaagaaaaggcttgtcaagaagatcaagtcctagggctagttcattaa |
3789510 |
T |
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| Q |
112 |
attggttttggtccattactaccaagctaccaaaggaaacatatatgacagattgaggtgcttgtttatctaaccaatctaagcaagttgtgtcttcttg |
211 |
Q |
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| T |
3789511 |
attggttttggtccattactaccaagctaccaaaggaaacatatatgactgattgaggtgcttgtttatctaaccattctaagcaagttgagtcttcttg |
3789610 |
T |
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| Q |
212 |
ccataatgaacttttgttgttgttactttcc |
242 |
Q |
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| T |
3789611 |
ccataatgaacttttgttgttgttactttcc |
3789641 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 12 - 230
Target Start/End: Original strand, 3768075 - 3768293
Alignment:
| Q |
12 |
tcatcagggtatgcatagtttaccttgttgtcattactaggacgaacaacccaaagaaaaggcttgtcaagaagatcaagtcctagggctagttcattaa |
111 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3768075 |
tcatcagggtatgcatagtttaccttgttgtcattactaggacgaacaacccaaagaaaaggcttgtcaagaagatcaagtcctagggctagttcattaa |
3768174 |
T |
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| Q |
112 |
attggttttggtccattactaccaagctaccaaaggaaacatatatgacagattgaggtgcttgtttatctaaccaatctaagcaagttgtgtcttcttg |
211 |
Q |
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|||||||||||||||||||| |||| ||||| ||||||||||||| ||| ||||| | || ||| ||||||| |||||||||| |||| |||||||||| |
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| T |
3768175 |
attggttttggtccattactgccaaactaccgaaggaaacatatacgaccgattgtgatggttgcttatctagccaatctaaggaagtcatgtcttcttg |
3768274 |
T |
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| Q |
212 |
ccataatgaacttttgttg |
230 |
Q |
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||| ||||||||||||||| |
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| T |
3768275 |
ccagaatgaacttttgttg |
3768293 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 12 - 231
Target Start/End: Original strand, 3780353 - 3780572
Alignment:
| Q |
12 |
tcatcagggtatgcatagtttaccttgttgtcattactaggacgaacaacccaaagaaaaggcttgtcaagaagatcaagtcctagggctagttcattaa |
111 |
Q |
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|||||||||||||||||||||||||| || ||||| || |||||||||||||||| |||||| || ||||||||||||||||||| |||||||| |||| |
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| T |
3780353 |
tcatcagggtatgcatagtttaccttattatcattgctcggacgaacaacccaaataaaaggtttatcaagaagatcaagtcctaaagctagttcgttaa |
3780452 |
T |
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| Q |
112 |
attggttttggtccattactaccaagctaccaaaggaaacatatatgacagattgaggtgcttgtttatctaaccaatctaagcaagttgtgtcttcttg |
211 |
Q |
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||||||||||||||||||| |||| |||||||||||||||||| ||| |||||||||| | || ||| | ||||||||| || |||| ||||||||| |
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| T |
3780453 |
attggttttggtccattacggccaaactaccaaaggaaacatatgcgacggattgaggtggatattgatcgagccaatctaaacatgttgcgtcttcttg |
3780552 |
T |
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| Q |
212 |
ccataatgaacttttgttgt |
231 |
Q |
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||| ||||||||| |||||| |
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| T |
3780553 |
ccagaatgaacttgtgttgt |
3780572 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 57 - 214
Target Start/End: Original strand, 3755472 - 3755629
Alignment:
| Q |
57 |
acaacccaaagaaaaggcttgtcaagaagatcaagtcctagggctagttcattaaattggttttggtccattactaccaagctaccaaaggaaacatata |
156 |
Q |
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|||||||||||||||||| | |||||||||||||| ||||| |||| ||| || ||||| ||| | | ||| || || |||||||| |||||||||| |
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| T |
3755472 |
acaacccaaagaaaaggcctttcaagaagatcaagccctagagctaattctttgaattgatttggaccaattgatattaaactaccaaatgaaacatata |
3755571 |
T |
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| Q |
157 |
tgacagattgaggtgcttgtttatctaaccaatctaagcaagttgtgtcttcttgcca |
214 |
Q |
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||||||||| ||||| | || ||||||||| |||| ||| ||| ||||||||||| |
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| T |
3755572 |
tgacagatttaggtggatattgatctaaccattctatgcatgtttcatcttcttgcca |
3755629 |
T |
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