View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6430_low_1 (Length: 489)
Name: NF6430_low_1
Description: NF6430
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6430_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 337; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 104 - 468
Target Start/End: Complemental strand, 19755327 - 19754963
Alignment:
| Q |
104 |
cctcctcaagatttgaatgctaaaagtgttgaagatgatcaacaacacatttatgaagaaaatgaagggggtccatctccggtcgaaggtggaaaaagta |
203 |
Q |
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| T |
19755327 |
cctcctcaagatttgaatgataaaagtgttgaagatgatcaacaacacattgatgaagaaaatgaagggggtccatctctggtcgaaagtggaaaaagta |
19755228 |
T |
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| Q |
204 |
aagaacctcgtgggttgaactctgaagatgatacaaagcacactgacactgatggggaaggtcgtaaagaatatgtcaaagaatctaaagatgaatctaa |
303 |
Q |
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| T |
19755227 |
aagaacctcgtgggttgaactctgaagatgatacaaagcacactgacactgatggggaaggtcgtaaagaatatgtcaaagaatctaaagatgaatctaa |
19755128 |
T |
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| Q |
304 |
acaagattctccaaagacaaaatctcctactccagtgacaaattctaccactgtgactataagtcaagaggagtttgatgtgctgaaagaacgtgaccct |
403 |
Q |
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| T |
19755127 |
acaagattctccaaagacaaaatctcctactcgagtgacaaattctaccagtgtgacaataagtcaagaggagtttgatgtgctgaaagaacgtgaccct |
19755028 |
T |
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| Q |
404 |
tttgaggcccttgatcttatgttggttggtaatatcctcccttcaaatactgacacagagtcttc |
468 |
Q |
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| T |
19755027 |
tttgaggcccttgatcttatgttggttggtaatatcctcccttcaaatactgacacagagtcttc |
19754963 |
T |
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Target: chr4 (Bit Score: 84; Significance: 1e-39; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 18 - 101
Target Start/End: Complemental strand, 34605403 - 34605320
Alignment:
| Q |
18 |
agtatgttttgattcctaaagctccttccatataagaaatactcgacttattgacagaatccaacaaattagttatgctctctg |
101 |
Q |
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| T |
34605403 |
agtatgttttgattcctaaagctccttccatataagaaatactcgacttattgacagaatccaacaaattagttatgctctctg |
34605320 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 29 - 99
Target Start/End: Original strand, 4483773 - 4483843
Alignment:
| Q |
29 |
attcctaaagctccttccatataagaaatactcgacttattgacagaatccaacaaattagttatgctctc |
99 |
Q |
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| T |
4483773 |
attcctaaagcaccttccatataagatatagcagacttattgacagagtccagcaaattagctatgctctc |
4483843 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 29 - 99
Target Start/End: Original strand, 4488741 - 4488811
Alignment:
| Q |
29 |
attcctaaagctccttccatataagaaatactcgacttattgacagaatccaacaaattagttatgctctc |
99 |
Q |
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| T |
4488741 |
attcctaaagcaccttccatataagatatagcagacttattgacagagtccagcaaattagctatgctctc |
4488811 |
T |
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