View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6430_low_3 (Length: 364)
Name: NF6430_low_3
Description: NF6430
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6430_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 330; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 18 - 359
Target Start/End: Complemental strand, 10162448 - 10162107
Alignment:
| Q |
18 |
ccaactggggtgcccaatccctcacaacaaagcccattccttcaactctctcttcaaaccctttcgaaagttcacctcttttcccttcatttttatcaaa |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
10162448 |
ccaactggggtgcccaatccctcacaacaaagcccattccttcaactctctcttcaaacccttttgaaagttcacctcttttcccttcatttttatcaaa |
10162349 |
T |
|
| Q |
118 |
gatgtctcctttatcagcatctctcaacacccaaataaactttatcttgctttgtttcaatccagttgcaatctgttcaatttcttcatctgtcaaggtt |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10162348 |
gatgtctcctttatcagcatctctcaacacccaaataaactttatcttgctttgtttcaatccagttgcaatctgttcaatttcttcatctgtcaaggtt |
10162249 |
T |
|
| Q |
218 |
gttgttgttccaaaagatacatatataactgagtttgtttcttgtttatcaagccattccatgcatgagtgcctaccctttgaatctttcttctcctgat |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10162248 |
gttgttgttccaaaagatacatatataactgagtttgtttcttgtttatcaagccattccatgcatgagtgcctaccctttgaatctttcttctcctgat |
10162149 |
T |
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| Q |
318 |
caatgcttagagggttgaagggtcccactgccctatgcttct |
359 |
Q |
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||||| ||||||||||||||||||||||||||| |||||||| |
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| T |
10162148 |
caatggttagagggttgaagggtcccactgcccaatgcttct |
10162107 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 260; Significance: 1e-145; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 18 - 359
Target Start/End: Complemental strand, 1609446 - 1609108
Alignment:
| Q |
18 |
ccaactggggtgcccaatccctcacaacaaagcccattccttcaactctctcttcaaaccctttcgaaagttcacctcttttcccttcatttttatcaaa |
117 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||| |||||| |
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| T |
1609446 |
ccaactggggtgcccaatccctcacaacaaaccccattccttcaactctctcttcaaacccttttgcaagttcacctcttttcccttcatttccatcaaa |
1609347 |
T |
|
| Q |
118 |
gatgtctcctttatcagcatctctcaacacccaaataaactttatcttgctttgtttcaatccagttgcaatctgttcaatttcttcatctgtcaaggtt |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
1609346 |
tatgtctcctttatcagcatctctcaacacccaaatgaactttatcttgctttgttccaacccagttgcaatctgttcaatttcttcatctgtcaaggtt |
1609247 |
T |
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| Q |
218 |
gttgttgttccaaaagatacatatataactgagtttgtttcttgtttatcaagccattccatgcatgagtgcctaccctttgaatctttcttctcctgat |
317 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||| ||||||||||||||||||||||||||| | | |
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| T |
1609246 |
gttgttgttccaaaagatacatatataactgagtttggttcttgtttatcaagccattccatacataagtgcctaccctttgaatctttcttcttc---t |
1609150 |
T |
|
| Q |
318 |
caatgcttagagggttgaagggtcccactgccctatgcttct |
359 |
Q |
| |
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||||| | ||||||||||||||||| ||||||| |||||||| |
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| T |
1609149 |
caatggtaagagggttgaagggtccaactgcccaatgcttct |
1609108 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 129 - 249
Target Start/End: Complemental strand, 37721784 - 37721664
Alignment:
| Q |
129 |
tatcagcatctctcaacacccaaataaactttatcttgctttgtttcaatccagttgcaatctgttcaatttcttcatctgtcaaggttgttgttgttcc |
228 |
Q |
| |
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||||||||||||| || ||||||||||| ||| ||| ||||||| ||| ||| |||||| || | ||||| ||| ||| | |||| |||||| || || |
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| T |
37721784 |
tatcagcatctcttaatacccaaataaatttttgcttactttgttccaacccatttgcaagctctataatttgttcctcttttaaggctgttgtggtccc |
37721685 |
T |
|
| Q |
229 |
aaaagatacatatataactga |
249 |
Q |
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|||||||| ||| || ||||| |
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| T |
37721684 |
aaaagatatataaattactga |
37721664 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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