View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6430_low_4 (Length: 305)

Name: NF6430_low_4
Description: NF6430
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6430_low_4
NF6430_low_4
[»] chr1 (8 HSPs)
chr1 (11-236)||(47666391-47666616)
chr1 (234-285)||(47668029-47668080)
chr1 (37-142)||(28858624-28858729)
chr1 (197-270)||(42471275-42471348)
chr1 (17-63)||(33827732-33827778)
chr1 (17-63)||(33840187-33840233)
chr1 (33-63)||(11013007-11013037)
chr1 (33-63)||(52563733-52563763)
[»] chr4 (3 HSPs)
chr4 (30-141)||(52339199-52339310)
chr4 (23-137)||(43491115-43491229)
chr4 (204-269)||(26619935-26620000)
[»] chr3 (7 HSPs)
chr3 (38-139)||(20330457-20330558)
chr3 (31-141)||(26888322-26888432)
chr3 (18-119)||(20281883-20281983)
chr3 (18-119)||(20309497-20309598)
chr3 (18-119)||(20331678-20331779)
chr3 (45-143)||(26890847-26890945)
chr3 (38-131)||(20308289-20308383)
[»] chr7 (2 HSPs)
chr7 (24-143)||(27878602-27878721)
chr7 (98-142)||(32868354-32868398)
[»] chr8 (2 HSPs)
chr8 (202-270)||(39284622-39284690)
chr8 (70-146)||(28339312-28339388)
[»] chr5 (2 HSPs)
chr5 (204-255)||(3522461-3522512)
chr5 (203-270)||(26449124-26449191)
[»] chr2 (4 HSPs)
chr2 (227-270)||(40627051-40627094)
chr2 (33-63)||(7981129-7981159)
chr2 (33-63)||(43237708-43237738)
chr2 (33-129)||(34404967-34405063)
[»] chr6 (1 HSPs)
chr6 (43-143)||(2243593-2243693)


Alignment Details
Target: chr1 (Bit Score: 206; Significance: 1e-112; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 11 - 236
Target Start/End: Original strand, 47666391 - 47666616
Alignment:
Q  11 cacagagagattatgggttgagggaccaaaactcaagtgattaatatttgcagcgcaaatttgaaaggattagaaaaatcagagactaaaactcaagtga 110  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  47666391 cacagagagattatgggttgagagaccaaaactcaagtgattaatattttcagcgcaaatttgaaaggattagaaaattcagagactaaaactcaagtga 47666490  T
Q  111 cccctatttgcagggactaaacgtataaataagtctatgattaaacacttagggcccgtttggagtacaagatatgatagaaaacctgatgggattagaa 210  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47666491 cccctatttgcagggactaaacgtataaataagcctatgattaaacacttagggcccgtttggagtacaagatatgatagaaaacctgatgggattagaa 47666590  T
Q  211 aatagataaagattggatatgatagt 236  Q
    ||||||||||||| ||||||||||||    
T  47666591 aatagataaagataggatatgatagt 47666616  T

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Target: chr1; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 234 - 285
Target Start/End: Original strand, 47668029 - 47668080
Alignment:
Q  234 agtaacatgatagacagttatcatttcatgcgtttggagcatagttgttact 285  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  47668029 agtaacatgatagacagttatcatttcatgcgtttggagcatacttgttact 47668080  T

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Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 37 - 142
Target Start/End: Original strand, 28858624 - 28858729
Alignment:
Q  37 caaaactcaagtgattaatatttgcagcgcaaatttgaaaggattagaaaaatcagagactaaaactcaagtgacccctatttgcagggactaaacgtat 136  Q
    ||||| ||||||||||||||||||||   |||||||||||||||||| ||| | |  ||  ||||||||| | |||||||||| |||||||| ||| |||    
T  28858624 caaaagtcaagtgattaatatttgcatgacaaatttgaaaggattagcaaattaatggaacaaaactcaaataacccctatttacagggacttaacatat 28858723  T
Q  137 aaataa 142  Q
    ||||||    
T  28858724 aaataa 28858729  T

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Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 197 - 270
Target Start/End: Original strand, 42471275 - 42471348
Alignment:
Q  197 tgatgggattagaaaatagataaagattggatatgatagtaacatgatagacagttatcatttcatgcgtttgg 270  Q
    |||| ||||||||||||||||||||||  ||||||||| | | |||||||||| ||||||| ||||| ||||||    
T  42471275 tgataggattagaaaatagataaagatatgatatgataatgatatgatagacatttatcatatcatgtgtttgg 42471348  T

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Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 17 - 63
Target Start/End: Original strand, 33827732 - 33827778
Alignment:
Q  17 gagattatgggttgagggaccaaaactcaagtgattaatatttgcag 63  Q
    |||| |||| ||| |||||||||||||||||||||||||||||||||    
T  33827732 gagactatgagtttagggaccaaaactcaagtgattaatatttgcag 33827778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 17 - 63
Target Start/End: Complemental strand, 33840233 - 33840187
Alignment:
Q  17 gagattatgggttgagggaccaaaactcaagtgattaatatttgcag 63  Q
    |||| |||| ||| |||||||||||||||||||||||||||||||||    
T  33840233 gagactatgagtttagggaccaaaactcaagtgattaatatttgcag 33840187  T

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Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 33 - 63
Target Start/End: Original strand, 11013007 - 11013037
Alignment:
Q  33 ggaccaaaactcaagtgattaatatttgcag 63  Q
    |||||||||||||||||||||||||||||||    
T  11013007 ggaccaaaactcaagtgattaatatttgcag 11013037  T

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Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 33 - 63
Target Start/End: Complemental strand, 52563763 - 52563733
Alignment:
Q  33 ggaccaaaactcaagtgattaatatttgcag 63  Q
    |||||||||||||||||||||||||||||||    
T  52563763 ggaccaaaactcaagtgattaatatttgcag 52563733  T

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Target: chr4 (Bit Score: 64; Significance: 5e-28; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 30 - 141
Target Start/End: Complemental strand, 52339310 - 52339199
Alignment:
Q  30 gagggaccaaaactcaagtgattaatatttgcagcgcaaatttgaaaggattagaaaaatcagagactaaaactcaagtgacccctatttgcagggacta 129  Q
    |||||||||||| ||||||||||||||||||||| | ||  ||||||||||||| ||| |||| ||| ||||||| | ||||||||||||||||||||||    
T  52339310 gagggaccaaaagtcaagtgattaatatttgcagggaaagattgaaaggattagtaaattcagggaccaaaactctaatgacccctatttgcagggacta 52339211  T
Q  130 aacgtataaata 141  Q
    || |||||||||    
T  52339210 aatgtataaata 52339199  T

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Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 23 - 137
Target Start/End: Original strand, 43491115 - 43491229
Alignment:
Q  23 atgggttgagggaccaaaactcaagtgattaatatttgcagcgcaaatttgaaaggattagaaaaatcagagactaaaactcaagtgacccctatttgca 122  Q
    |||||||  ||||| ||||||| |||||||||| ||||||   |||| ||||||||||||  ||| |||   || ||||||||||||||||||||||| |    
T  43491115 atgggtttggggactaaaactcgagtgattaatctttgcaaaacaaaattgaaaggattaacaaattcatgaaccaaaactcaagtgacccctatttgta 43491214  T
Q  123 gggactaaacgtata 137  Q
     ||||||||| ||||    
T  43491215 aggactaaacatata 43491229  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 204 - 269
Target Start/End: Original strand, 26619935 - 26620000
Alignment:
Q  204 attagaaaatagataaagattggatatgatagtaacatgatagacagttatcatttcatgcgtttg 269  Q
    ||||||||||  ||||  || |||||||||| |||||||||||||| ||||| |||||||| ||||    
T  26619935 attagaaaatgaataagaataggatatgataataacatgatagacatttatcctttcatgcatttg 26620000  T

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Target: chr3 (Bit Score: 50; Significance: 1e-19; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 38 - 139
Target Start/End: Complemental strand, 20330558 - 20330457
Alignment:
Q  38 aaaactcaagtgattaatatttgcagcgcaaatttgaaaggattagaaaaatcagagactaaaactcaagtgacccctatttgcagggactaaacgtata 137  Q
    |||||| ||||||||||||||||||| |||||| | |||||||||| ||| |||||||| |||| ||||   ||||||||||| |||||||||| |||||    
T  20330558 aaaacttaagtgattaatatttgcagggcaaatataaaaggattagtaaagtcagagaccaaaattcaaactacccctatttgtagggactaaatgtata 20330459  T
Q  138 aa 139  Q
    ||    
T  20330458 aa 20330457  T

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Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 31 - 141
Target Start/End: Complemental strand, 26888432 - 26888322
Alignment:
Q  31 agggaccaaaactcaagtgattaatatttgcagcgcaaatttgaaaggattagaaaaatcagagactaaaactcaagtgacccctatttgcagggactaa 130  Q
    |||||||||||| ||||||||||||||||| |   || ||||||||||||| | ||| |||| ||| ||||||||||| ||  ||||| | |||||||||    
T  26888432 agggaccaaaacacaagtgattaatatttggacgtcagatttgaaaggattggcaaattcagggaccaaaactcaagtaacaactattaggagggactaa 26888333  T
Q  131 acgtataaata 141  Q
    | |||||||||    
T  26888332 atgtataaata 26888322  T

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Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 18 - 119
Target Start/End: Original strand, 20281883 - 20281983
Alignment:
Q  18 agattatgggttgagggaccaaaactcaagtgattaatatttgcagcgcaaatttgaaaggattagaaaaatcagagactaaaactcaagtgacccctat 117  Q
    |||||||||| | |||||||||||||||||||||| |||||||||| |||| ||||||| |||| | ||| ||| ||||  ||| |||| ||||||||||    
T  20281883 agattatgggctcagggaccaaaactcaagtgattgatatttgcagagcaagtttgaaa-gattggtaaattcaaagaccgaaattcaaatgacccctat 20281981  T
Q  118 tt 119  Q
    ||    
T  20281982 tt 20281983  T

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Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 18 - 119
Target Start/End: Original strand, 20309497 - 20309598
Alignment:
Q  18 agattatgggttgagggaccaaaactcaagtgattaatatttgcagcgcaaatttgaaaggattagaaaaatcagagactaaaactcaagtgacccctat 117  Q
    ||||| |||| | |||||||||||||||||||||||||| |||||  |||| |||||||||||| | ||| |||| ||| |||| |||| |||||| |||    
T  20309497 agattgtgggctcagggaccaaaactcaagtgattaataattgcaaggcaagtttgaaaggattggtaaattcagggaccaaaattcaaatgacccttat 20309596  T
Q  118 tt 119  Q
    ||    
T  20309597 tt 20309598  T

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Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 18 - 119
Target Start/End: Original strand, 20331678 - 20331779
Alignment:
Q  18 agattatgggttgagggaccaaaactcaagtgattaatatttgcagcgcaaatttgaaaggattagaaaaatcagagactaaaactcaagtgacccctat 117  Q
    |||||||||| | || ||||||||||||||||||||||| |||||  |||| |||||||||||| | ||| |||| ||| | || |||| ||||||||||    
T  20331678 agattatgggcttagagaccaaaactcaagtgattaataattgcaaggcaagtttgaaaggattggtaaattcagggaccagaattcaaatgacccctat 20331777  T
Q  118 tt 119  Q
    ||    
T  20331778 tt 20331779  T

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Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 45 - 143
Target Start/End: Original strand, 26890847 - 26890945
Alignment:
Q  45 aagtgattaatatttgcagcgcaaatttgaaaggattagaaaaatcagagactaaaactcaagtgacccctatttgcagggactaaacgtataaataag 143  Q
    |||||||| |||||||||   |||||||||||| ||||| ||| |||||||| | |||| ||||||||| | |||| |||||||| | |||||||||||    
T  26890847 aagtgattcatatttgcatgtcaaatttgaaagaattagcaaattcagagaccataacttaagtgacccttttttggagggactagatgtataaataag 26890945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 38 - 131
Target Start/End: Complemental strand, 20308383 - 20308289
Alignment:
Q  38 aaaactcaagtgattaatatttgcagcgcaaat-ttgaaaggattagaaaaatcagagactaaaactcaagtgacccctatttgcagggactaaa 131  Q
    |||||| ||||||||||||||||||| |||||| |  |||||||||  ||| |||| ||| |||| |||| | ||||||||||  ||||||||||    
T  20308383 aaaacttaagtgattaatatttgcagggcaaatataaaaaggattattaaattcagggaccaaaattcaaattacccctatttatagggactaaa 20308289  T

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Target: chr7 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 24 - 143
Target Start/End: Original strand, 27878602 - 27878721
Alignment:
Q  24 tgggttgagggaccaaaactcaagtgattaatatttgcagcgcaaatttgaaaggattagaaaaatcagagactaaaactcaagtgacccctatttgcag 123  Q
    |||||| | ||| ||||| ||||||||||||||||||||  ||||| || | |||||||| ||| |||  ||| |||||||||||||| ||||||| |||    
T  27878602 tgggttcaaggatcaaaagtcaagtgattaatatttgcatggcaaaatttagaggattagcaaattcacggacgaaaactcaagtgacacctatttacag 27878701  T
Q  124 ggactaaacgtataaataag 143  Q
    ||||||| | ||||||||||    
T  27878702 ggactaagcatataaataag 27878721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 98 - 142
Target Start/End: Original strand, 32868354 - 32868398
Alignment:
Q  98 aaaactcaagtgacccctatttgcagggactaaacgtataaataa 142  Q
    ||||||||||||||||||||||| |  ||||||||||||| ||||    
T  32868354 aaaactcaagtgacccctatttgtaaagactaaacgtatagataa 32868398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 202 - 270
Target Start/End: Complemental strand, 39284690 - 39284622
Alignment:
Q  202 ggattagaaaatagataaagattggatatgatagtaacatgatagacagttatcatttcatgcgtttgg 270  Q
    |||||||||| | ||||||||| ||||| || ||||||||||||||||  |||||| ||||| ||||||    
T  39284690 ggattagaaattggataaagataggataagaaagtaacatgatagacatctatcatatcatgtgtttgg 39284622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 70 - 146
Target Start/End: Original strand, 28339312 - 28339388
Alignment:
Q  70 tttgaaaggattagaaaaatcagagactaaaactcaagtgacccctatttgcagggactaaacgtataaataagtct 146  Q
    ||||||| |||||| ||| |||| ||| ||   |||| |||||||||||||||||||||||| ||||| ||| ||||    
T  28339312 tttgaaatgattagtaaattcagggaccaagtttcaaatgacccctatttgcagggactaaaggtatatatatgtct 28339388  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 204 - 255
Target Start/End: Original strand, 3522461 - 3522512
Alignment:
Q  204 attagaaaatagataaagattggatatgatagtaacatgatagacagttatc 255  Q
    ||||||||||||||||||||   ||||||||||||||||||| ||| |||||    
T  3522461 attagaaaatagataaagatataatatgatagtaacatgataaacatttatc 3522512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 203 - 270
Target Start/End: Complemental strand, 26449191 - 26449124
Alignment:
Q  203 gattagaaaatagataaagattggatatgatagtaacatgatagacagttatcatttcatgcgtttgg 270  Q
    ||||||||||| |||||| ||  ||||||||||| |||||||||||| ||||| | |||||| |||||    
T  26449191 gattagaaaatggataaaaatatgatatgatagtgacatgatagacacttatcctatcatgcttttgg 26449124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.000000007; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 227 - 270
Target Start/End: Complemental strand, 40627094 - 40627051
Alignment:
Q  227 atatgatagtaacatgatagacagttatcatttcatgcgtttgg 270  Q
    |||||||||||||| |||||||| ||||||||||||| ||||||    
T  40627094 atatgatagtaacaagatagacacttatcatttcatgtgtttgg 40627051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 33 - 63
Target Start/End: Complemental strand, 7981159 - 7981129
Alignment:
Q  33 ggaccaaaactcaagtgattaatatttgcag 63  Q
    |||||||||||||||||||||||||||||||    
T  7981159 ggaccaaaactcaagtgattaatatttgcag 7981129  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 33 - 63
Target Start/End: Original strand, 43237708 - 43237738
Alignment:
Q  33 ggaccaaaactcaagtgattaatatttgcag 63  Q
    |||||||||||||||||||||||||||||||    
T  43237708 ggaccaaaactcaagtgattaatatttgcag 43237738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 33 - 129
Target Start/End: Original strand, 34404967 - 34405063
Alignment:
Q  33 ggaccaaaactcaagtgattaatatttgcagcgcaaatttgaaaggattagaaaaatcagagactaaaactcaagtgacccctatttgcagggacta 129  Q
    |||||||||||||| ||||||  |||||||| | || ||||  |||||||| ||   ||  |||||||| |||| ||| ||||||||||||||||||    
T  34404967 ggaccaaaactcaaatgattagaatttgcagggaaattttgggaggattagtaagtacatggactaaaattcaattgagccctatttgcagggacta 34405063  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 43 - 143
Target Start/End: Original strand, 2243593 - 2243693
Alignment:
Q  43 tcaagtgattaatatttgcagcgcaaatttgaaaggattagaaaaatcagagactaaaactcaagtgacccctatttgcagggactaaacgtataaataa 142  Q
    ||||||||||||||||||||| ||||| ||  |||||| || ||| |||  ||  |||| | || || |||||||||| ||||| ||||| |||||||||    
T  2243593 tcaagtgattaatatttgcagagcaaaattcgaaggatgagcaaattcatggatcaaaatttaaatgtcccctatttgaagggattaaacttataaataa 2243692  T
Q  143 g 143  Q
    |    
T  2243693 g 2243693  T

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