View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6431_high_12 (Length: 257)

Name: NF6431_high_12
Description: NF6431
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6431_high_12
NF6431_high_12
[»] chr7 (2 HSPs)
chr7 (19-237)||(3597106-3597324)
chr7 (54-112)||(37358574-37358632)
[»] chr8 (3 HSPs)
chr8 (153-216)||(29512905-29512968)
chr8 (140-201)||(44140994-44141055)
chr8 (172-216)||(19649260-19649304)
[»] scaffold0009 (1 HSPs)
scaffold0009 (172-216)||(199360-199404)
[»] chr2 (2 HSPs)
chr2 (172-216)||(23377579-23377623)
chr2 (129-195)||(33019096-33019162)
[»] chr6 (2 HSPs)
chr6 (129-195)||(4910987-4911053)
chr6 (129-193)||(4908041-4908105)
[»] chr4 (2 HSPs)
chr4 (129-187)||(21691160-21691218)
chr4 (140-216)||(50061558-50061633)
[»] chr1 (3 HSPs)
chr1 (135-195)||(2099627-2099687)
chr1 (135-195)||(30557587-30557647)
chr1 (129-161)||(34875063-34875095)


Alignment Details
Target: chr7 (Bit Score: 191; Significance: 1e-104; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 19 - 237
Target Start/End: Complemental strand, 3597324 - 3597106
Alignment:
Q  19 tgtaatgcctgaactttgattttgctattaatggtcatagcatgttcgactggttttgtgttgctatctttggaatgtaaatcgtataatataatgtttt 118  Q
    |||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  3597324 tgtaatgcctgaactttgattttgttattaatggtcatagcatgttcaactggttttgtgttgctatctttggaatgtaaatcatataatataatgtttt 3597225  T
Q  119 taagaatcaattttgcatgaatttatccaaagaaaaatcacttatagtgaaaatcacttttaaccaaaattaattcttcccaccgtacaaccaaacacgc 218  Q
    ||| |||||||||||||||||| |||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3597224 taaaaatcaattttgcatgaatgtatctaaagacaaatcacttatagtgaaaatcacttttaaccaaaattaattcttcccaccgtacaaccaaacacgc 3597125  T
Q  219 acgcaaataggttctggta 237  Q
    |||||||||||||||||||    
T  3597124 acgcaaataggttctggta 3597106  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 54 - 112
Target Start/End: Complemental strand, 37358632 - 37358574
Alignment:
Q  54 catagcatgttcgactggttttgtgttgctatctttggaatgtaaatcgtataatataa 112  Q
    ||||||| ||||  ||||||||||||||||||| ||| |||||||||  ||||||||||    
T  37358632 catagcaggttcagctggttttgtgttgctatcgttgtaatgtaaattatataatataa 37358574  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 153 - 216
Target Start/End: Original strand, 29512905 - 29512968
Alignment:
Q  153 aaatcacttatagtgaaaatcacttttaaccaaaattaattcttcccaccgtacaaccaaacac 216  Q
    |||||| || |||| ||||||||||||||||||||| |||||| | ||||| ||||||||||||    
T  29512905 aaatcagttttagtcaaaatcacttttaaccaaaatcaattctccacaccgcacaaccaaacac 29512968  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 140 - 201
Target Start/End: Complemental strand, 44141055 - 44140994
Alignment:
Q  140 tttatccaaagaaaaatcacttatagtgaaaatcacttttaaccaaaattaattcttcccac 201  Q
    |||||||||| | || |||||| |||| | ||||||||||||||||||| |||||| |||||    
T  44141055 tttatccaaacacaattcacttttagtcagaatcacttttaaccaaaatcaattctccccac 44140994  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 216
Target Start/End: Original strand, 19649260 - 19649304
Alignment:
Q  172 tcacttttaaccaaaattaattcttcccaccgtacaaccaaacac 216  Q
    ||||||||||||||||| |||| || |||||| ||||||||||||    
T  19649260 tcacttttaaccaaaatcaattttttccaccgcacaaccaaacac 19649304  T

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Target: scaffold0009 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 172 - 216
Target Start/End: Complemental strand, 199404 - 199360
Alignment:
Q  172 tcacttttaaccaaaattaattcttcccaccgtacaaccaaacac 216  Q
    ||||||||||||||||| ||||||| |||||| ||||||||||||    
T  199404 tcacttttaaccaaaatcaattctttccaccgcacaaccaaacac 199360  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 172 - 216
Target Start/End: Original strand, 23377579 - 23377623
Alignment:
Q  172 tcacttttaaccaaaattaattcttcccaccgtacaaccaaacac 216  Q
    |||||||||||||||||||||| || |||||| ||||||||||||    
T  23377579 tcacttttaaccaaaattaattttttccaccgcacaaccaaacac 23377623  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 129 - 195
Target Start/End: Complemental strand, 33019162 - 33019096
Alignment:
Q  129 ttttgcatgaatttatccaaagaaaaatcacttatagtgaaaatcacttttaaccaaaattaattct 195  Q
    |||| |||||||  ||||||| | ||||||||| |||| | ||||||||||||||||||| ||||||    
T  33019162 ttttacatgaatgcatccaaacacaaatcacttttagtcagaatcacttttaaccaaaatcaattct 33019096  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 129 - 195
Target Start/End: Original strand, 4910987 - 4911053
Alignment:
Q  129 ttttgcatgaatttatccaaagaaaaatcacttatagtgaaaatcacttttaaccaaaattaattct 195  Q
    |||| ||| ||| |||||||| | ||||||||| |||| | ||| ||||||||||||||||||||||    
T  4910987 ttttacataaatgtatccaaacataaatcacttttagtcagaattacttttaaccaaaattaattct 4911053  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 129 - 193
Target Start/End: Original strand, 4908041 - 4908105
Alignment:
Q  129 ttttgcatgaatttatccaaagaaaaatcacttatagtgaaaatcacttttaaccaaaattaatt 193  Q
    |||| ||||| |||||||||| | ||||||||| |||  | ||||||||||||||||||| ||||    
T  4908041 ttttacatgattttatccaaacacaaatcacttttaggaagaatcacttttaaccaaaatcaatt 4908105  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 129 - 187
Target Start/End: Complemental strand, 21691218 - 21691160
Alignment:
Q  129 ttttgcatgaatttatccaaagaaaaatcacttatagtgaaaatcacttttaaccaaaa 187  Q
    |||| ||||||| |||||||| | ||||||||| |||| | ||||||||||||||||||    
T  21691218 ttttacatgaatatatccaaacacaaatcacttgtagtcagaatcacttttaaccaaaa 21691160  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 140 - 216
Target Start/End: Complemental strand, 50061633 - 50061558
Alignment:
Q  140 tttatccaaagaaaaatcacttatagtgaaaatcacttttaaccaaaattaattcttcccaccgtacaaccaaacac 216  Q
    |||||||||| | || |||||| |||| | ||||||||||||||||||| |||||| ||||| | || |||||||||    
T  50061633 tttatccaaacacaattcactt-tagtcagaatcacttttaaccaaaatcaattctccccactgaactaccaaacac 50061558  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 195
Target Start/End: Complemental strand, 2099687 - 2099627
Alignment:
Q  135 atgaatttatccaaagaaaaatcacttatagtgaaaatcacttttaaccaaaattaattct 195  Q
    |||||| |||||||| | ||||||||| || | ||||| ||||||||||||||| ||||||    
T  2099687 atgaatgtatccaaacacaaatcacttttactcaaaattacttttaaccaaaatcaattct 2099627  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 195
Target Start/End: Original strand, 30557587 - 30557647
Alignment:
Q  135 atgaatttatccaaagaaaaatcacttatagtgaaaatcacttttaaccaaaattaattct 195  Q
    |||||| |||||||| | ||||||||| |||| | | ||||||||||||||||| ||||||    
T  30557587 atgaatgtatccaaacacaaatcacttctagtcagagtcacttttaaccaaaatcaattct 30557647  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 129 - 161
Target Start/End: Complemental strand, 34875095 - 34875063
Alignment:
Q  129 ttttgcatgaatttatccaaagaaaaatcactt 161  Q
    ||||||||||||||||||||||| |||||||||    
T  34875095 ttttgcatgaatttatccaaagataaatcactt 34875063  T

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