View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6431_high_6 (Length: 379)
Name: NF6431_high_6
Description: NF6431
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6431_high_6 |
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Alignment Details
Target: chr5 (Bit Score: 353; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 1 - 369
Target Start/End: Original strand, 1153816 - 1154184
Alignment:
| Q |
1 |
caatagctttgcacaaaaatctactttcagaagggctatcatcagcacagtttattggcccccgagacaaaagagaaaacaaactaaggaatgaaagaac |
100 |
Q |
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| T |
1153816 |
caatagctttgcacaaaaatctactttcagaagggctatcatcagcacggtttattggcccccgagacaaaagagaaaacaaactaaggaatgaaagaac |
1153915 |
T |
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| Q |
101 |
gccaacatatatctatctacattctacaccacaaattcagtttattacacacagtactctacaagcagtagagtttcatcatctcctgtcagttccacta |
200 |
Q |
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| T |
1153916 |
accaacatatatctatctacattctacaccacaaattcagtttattacacacagtactctacaagcagtagagtttcatcatctcctgtcagttccacta |
1154015 |
T |
|
| Q |
201 |
ctctgaggaagcatcggtactctggtcaccactcttagcctttcccagcacaataccaagctgcacaaaacagtaccaaataattaattacttgttacta |
300 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
1154016 |
ctctgaggaagcatcagtactctggtcaccactcttagcctttcccagcacaataccaagctgcacaaaacagtaccagataattaattacttgttacta |
1154115 |
T |
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| Q |
301 |
gcaaattgaacacaattaagtgataatccagaaatcaggaaaatgtaagaagaagaaccttagcctttg |
369 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1154116 |
gcaaattgaacacaattaagtgataatccagaaatcaggaaaatgtaagaagaagaaccttagcctttg |
1154184 |
T |
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