View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6431_high_7 (Length: 339)

Name: NF6431_high_7
Description: NF6431
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6431_high_7
NF6431_high_7
[»] chr5 (6 HSPs)
chr5 (20-321)||(7141572-7141873)
chr5 (39-310)||(7154361-7154632)
chr5 (22-310)||(7131850-7132138)
chr5 (81-226)||(41305312-41305457)
chr5 (162-223)||(31177694-31177755)
chr5 (87-175)||(41337787-41337875)
[»] chr3 (1 HSPs)
chr3 (81-223)||(22986265-22986407)
[»] chr8 (1 HSPs)
chr8 (78-241)||(23610187-23610350)
[»] chr6 (2 HSPs)
chr6 (79-158)||(12425274-12425353)
chr6 (79-156)||(12268332-12268409)
[»] chr4 (1 HSPs)
chr4 (79-158)||(55954947-55955026)
[»] chr2 (1 HSPs)
chr2 (79-124)||(41795747-41795792)


Alignment Details
Target: chr5 (Bit Score: 298; Significance: 1e-167; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 20 - 321
Target Start/End: Original strand, 7141572 - 7141873
Alignment:
Q  20 gagcacagaactaaccaaaatagatgggtatgatataccaaaaaatactacagtctttataaatgcatgggcaataggaagagatcctaaatattggaat 119  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  7141572 gagcacagaactaaccaaaatagatgggtatgatataccaaaaaatactacagtctttataaatgcgtgggcaataggaagagatcctaaatattggaat 7141671  T
Q  120 gatgctgagaggtttattccagagaggtttgatgatagtttgattgatttcaaaggaaataacttcgagtacattcctttcggagctggaaggagaatgt 219  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7141672 gatgctgagaggtttattccagagaggtttgatgatagtttgattgatttcaaaggaaataacttcgagtacattcctttcggagctggaaggagaatgt 7141771  T
Q  220 gtccgggtatgacctttggtttagcaagtgttatatttcctttggctctattgctctatcactttaactgggaactcccaaatcagatgaagtctcagga 319  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7141772 gtccgggtatgacctttggtttagcaagtgttatatttcctttggctctattgctctatcactttaactgggaactcccaaatcagatgaagtctcagga 7141871  T
Q  320 tt 321  Q
    ||    
T  7141872 tt 7141873  T

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Target: chr5; HSP #2
Raw Score: 124; E-Value: 9e-64
Query Start/End: Original strand, 39 - 310
Target Start/End: Original strand, 7154361 - 7154632
Alignment:
Q  39 atagatgggtatgatataccaaaaaatactacagtctttataaatgcatgggcaataggaagagatcctaaatattggaatgatgctgagaggtttattc 138  Q
    |||||||| ||||| |||||||||||||||| |||  | ||||||||||||||| | | |||||||||  ||||||||| ||||||||||| ||| ||||    
T  7154361 atagatggttatgaaataccaaaaaatactaaagtgatgataaatgcatgggcagtggcaagagatccacaatattggactgatgctgagatgttcattc 7154460  T
Q  139 cagagaggtttgatgatagtttgattgatttcaaaggaaataacttcgagtacattcctttcggagctggaaggagaatgtgtccgggtatgacctttgg 238  Q
    ||||||||||||||| ||||||||||||||||||||||||||| || ||||| |||||||| || |||||||| ||||||||||| || ||| | |||||    
T  7154461 cagagaggtttgatggtagtttgattgatttcaaaggaaataattttgagtatattccttttggtgctggaagaagaatgtgtccaggcatgtcatttgg 7154560  T
Q  239 tttagcaagtgttatatttcctttggctctattgctctatcactttaactgggaactcccaaatcagatgaa 310  Q
    | |||| ||||||||  ||||| | ||| |||| || ||||| ||||| |||||||| ||||||||||||||    
T  7154561 tatagctagtgttatgcttcctcttgctttattactatatcattttaattgggaactaccaaatcagatgaa 7154632  T

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Target: chr5; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 22 - 310
Target Start/End: Original strand, 7131850 - 7132138
Alignment:
Q  22 gcacagaactaaccaaaatagatgggtatgatataccaaaaaatactacagtctttataaatgcatgggcaataggaagagatcctaaatattggaatga 121  Q
    |||| ||| ||||||| || ||||| ||||||||||||||||| |||| |||| | || |||| |||||| || | ||| |||||| ||||||||| |||    
T  7131850 gcactgaattaaccaacattgatggttatgatataccaaaaaagactaaagtcatgattaatgtatgggctatggcaagggatcctcaatattggactga 7131949  T
Q  122 tgctgagaggtttattccagagaggtttgatgatagtttgattgatttcaaaggaaataacttcgagtacattcctttcggagctggaaggagaatgtgt 221  Q
    |||||||| ||||| ||||||||| ||||| | |||||  |||||||| | ||| ||||| || || ||  ||||||| ||||| || || ||||| ||     
T  7131950 tgctgagatgtttaatccagagagatttgaaggtagttctattgattttagagggaataattttgaatatcttccttttggagcaggtagaagaatttgc 7132049  T
Q  222 ccgggtatgacctttggtttagcaagtgttatatttcctttggctctattgctctatcactttaactgggaactcccaaatcagatgaa 310  Q
    || ||  ||   |||||| ||||  || ||||  ||||| ||||| |||| || ||||| ||||| |||||||| || ||| |||||||    
T  7132050 cctggcttgcaatttggtatagctggtattatgcttcctgtggctttattactttatcattttaattgggaacttcctaataagatgaa 7132138  T

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Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 81 - 226
Target Start/End: Original strand, 41305312 - 41305457
Alignment:
Q  81 aatgcatgggcaataggaagagatcctaaatattggaatgatgctgagaggtttattccagagaggtttgatgatagtttgattgatttcaaaggaaata 180  Q
    ||||| ||||| || ||||||||||| || ||||||  ||| |||||||| ||||  || |||||||||| | |||| |  |||||||||||||| |       
T  41305312 aatgcttgggcgattggaagagatccaaagtattgggttgaagctgagagttttaaacccgagaggtttgttaatagctcaattgatttcaaaggcacag 41305411  T
Q  181 acttcgagtacattcctttcggagctggaaggagaatgtgtccggg 226  Q
    |||| || ||||| || || || ||||||||||| |||||||||||    
T  41305412 actttgaatacataccatttggtgctggaaggaggatgtgtccggg 41305457  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 162 - 223
Target Start/End: Complemental strand, 31177755 - 31177694
Alignment:
Q  162 attgatttcaaaggaaataacttcgagtacattcctttcggagctggaaggagaatgtgtcc 223  Q
    |||||||||||||| |  ||||| |||||||| || ||||| |||||||| |||||||||||    
T  31177755 attgatttcaaaggtacaaactttgagtacataccgttcggtgctggaagaagaatgtgtcc 31177694  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 87 - 175
Target Start/End: Original strand, 41337787 - 41337875
Alignment:
Q  87 tgggcaataggaagagatcctaaatattggaatgatgctgagaggtttattccagagaggtttgatgatagtttgattgatttcaaagg 175  Q
    |||||||| ||||||||||| || ||||||  ||| |||||||| ||||  || |||||||||| | |||| |  ||||||||||||||    
T  41337787 tgggcaattggaagagatccaaagtattgggttgaagctgagagttttaaacctgagaggtttgttaatagctcaattgatttcaaagg 41337875  T

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Target: chr3 (Bit Score: 47; Significance: 8e-18; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 81 - 223
Target Start/End: Complemental strand, 22986407 - 22986265
Alignment:
Q  81 aatgcatgggcaataggaagagatcctaaatattggaatgatgctgagaggtttattccagagaggtttgatgatagtttgattgatttcaaaggaaata 180  Q
    ||||| ||||| || ||| | ||||||||||||||||||||  | || | ||||  ||| |||||||||  ||||||||  |||||||||||||||| ||    
T  22986407 aatgcttgggccattggacgggatcctaaatattggaatgaccccgataagttttatcctgagaggtttattgatagttctattgatttcaaaggaacta 22986308  T
Q  181 acttcgagtacattcctttcggagctggaaggagaatgtgtcc 223  Q
    | || ||||||||||| || || |||||||||||||| |||||    
T  22986307 attttgagtacattccatttggtgctggaaggagaatttgtcc 22986265  T

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Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 78 - 241
Target Start/End: Complemental strand, 23610350 - 23610187
Alignment:
Q  78 ataaatgcatgggcaataggaagagatcctaaatattggaatgatgctgagaggtttattccagagaggtttgatgatagtttgattgatttcaaaggaa 177  Q
    |||||||| |||||||||||||| ||||||||||||||||||||  | || | ||||  ||| || ||||||  |||||| |  |||||||||  |||||    
T  23610350 ataaatgcttgggcaataggaagggatcctaaatattggaatgacccagataagttttatcctgaaaggtttattgatagctctattgatttctcaggaa 23610251  T
Q  178 ataacttcgagtacattcctttcggagctggaaggagaatgtgtccgggtatgacctttggttt 241  Q
     ||| || |||| |||||| || || ||||| |||||||| ||||| || |||| || ||||||    
T  23610250 ctaattttgagttcattccatttggtgctggtaggagaatttgtcccggcatgaactatggttt 23610187  T

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Target: chr6 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 79 - 158
Target Start/End: Complemental strand, 12425353 - 12425274
Alignment:
Q  79 taaatgcatgggcaataggaagagatcctaaatattggaatgatgctgagaggtttattccagagaggtttgatgatagt 158  Q
    |||||||||||||||| |||||||||||  || |||||  ||||||||||| |||||| || ||||||||| ||||||||    
T  12425353 taaatgcatgggcaattggaagagatcccgaacattggtctgatgctgagaagtttataccggagaggtttcatgatagt 12425274  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 79 - 156
Target Start/End: Original strand, 12268332 - 12268409
Alignment:
Q  79 taaatgcatgggcaataggaagagatcctaaatattggaatgatgctgagaggtttattccagagaggtttgatgata 156  Q
    |||||||||||||||| ||||||||||| ||  |||||  |||||| |||| |||||| || ||||||||| ||||||    
T  12268332 taaatgcatgggcaattggaagagatcccaatcattggtctgatgcagagaagtttatacctgagaggtttcatgata 12268409  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 79 - 158
Target Start/End: Complemental strand, 55955026 - 55954947
Alignment:
Q  79 taaatgcatgggcaataggaagagatcctaaatattggaatgatgctgagaggtttattccagagaggtttgatgatagt 158  Q
    |||||||||||||||| ||||||||||| ||| ||||| |||||||  ||| |||||| || || |||||| ||||||||    
T  55955026 taaatgcatgggcaattggaagagatcccaaacattggtatgatgcaaagaagtttatacctgaaaggtttaatgatagt 55954947  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 79 - 124
Target Start/End: Complemental strand, 41795792 - 41795747
Alignment:
Q  79 taaatgcatgggcaataggaagagatcctaaatattggaatgatgc 124  Q
    |||||||||||||||| ||||||||||| ||||||||  |||||||    
T  41795792 taaatgcatgggcaatcggaagagatcccaaatattgatatgatgc 41795747  T

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