View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6431_low_1 (Length: 825)
Name: NF6431_low_1
Description: NF6431
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6431_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 436; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 436; E-Value: 0
Query Start/End: Original strand, 318 - 785
Target Start/End: Original strand, 4198570 - 4199037
Alignment:
| Q |
318 |
ttggttcggtccggtttttaaaacattacttttactgcaaactttctctcatttctttaatcatttgtcatgtttcctttggtctatatctctctttctt |
417 |
Q |
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| T |
4198570 |
ttggttcggtccggtttttaaaacattactttcactgcaaaatttctctcatttctttaatcaattgtcatgtttcctttggtctatatctctctttctt |
4198669 |
T |
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| Q |
418 |
ttccatgatgtttcattcttgtaacaattatggaaactaagacaaacatatagcaaggcatagatttctaaattaagcaaaatatgttaggagtgcatag |
517 |
Q |
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| T |
4198670 |
ttccatgatgtttcattcttgtaacaactatggaaactaagacaaacatatagcaaggcatagatttctaaattaagcaaaatatgttaggagtgcatag |
4198769 |
T |
|
| Q |
518 |
ccttcatctatgtgcaagacgtgaccttaaacaaattcatgttatgttaggtaaagtatttccattttgataaggtataatagacaataaataaattgag |
617 |
Q |
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| T |
4198770 |
ccttcatctatgtgcaagacgtgacactaaacaaattcatgttatgttaggtaaagtatttccattttgataaggtgtaatagacaataaataaattgag |
4198869 |
T |
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| Q |
618 |
gggcattgttgtttgattacatattttattgcaagaaataattgtggttgtcttttcattcatcaagattgaagtcaaaccaaatttgaaataaatgaga |
717 |
Q |
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| T |
4198870 |
gggcattgttgtttgattacatattttattgcaagaaataattgtggttgtcttttcattcatcaagattgaagtcaaaccaaatttgaaataaatgaga |
4198969 |
T |
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| Q |
718 |
tgaattctaaacatcccatcaaacaaatgttgcagttaaatggtgacaaccttagtctagaccaaggt |
785 |
Q |
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| T |
4198970 |
tgaattctaaacatcccatcaaacaaatgttgcagttaaatggtgacaaccttggtctagaccaaggt |
4199037 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 182; E-Value: 6e-98
Query Start/End: Original strand, 16 - 231
Target Start/End: Original strand, 4198351 - 4198576
Alignment:
| Q |
16 |
aaaacggcatcataaaacgtccattctttgctggttcatgaaattggatccatcacctgaaattagcatacaaaaagttaagatattgttagtcctcaaa |
115 |
Q |
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| T |
4198351 |
aaaacggcatcataaaacgtccattctttgctggttcatgaaattggatccatcacctgaaattagcatacaaaaagttaagatattgttagtcctcaaa |
4198450 |
T |
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| Q |
116 |
--------caaagttaaaataactgttgtgtttctatcctagctcttatcatttcattcaatgttttaaaaatcggactgaagattaaaccgac--aaaa |
205 |
Q |
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| T |
4198451 |
gtcacctacaaagttaaaataactgttgtgtttctatcctagctcttctcatttcattcaatgttttaaaaatcggactgaagattaaaccgacgaaaaa |
4198550 |
T |
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| Q |
206 |
cgtttaggtcattatttgattggttc |
231 |
Q |
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| T |
4198551 |
cgtttaggtcattatttgattggttc |
4198576 |
T |
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Back To:
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