View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6431_low_12 (Length: 292)
Name: NF6431_low_12
Description: NF6431
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6431_low_12 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 209; Significance: 1e-114; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 41 - 278
Target Start/End: Complemental strand, 44063528 - 44063291
Alignment:
| Q |
41 |
aaggattgtgagaaaactacctgacatggtttaatttggctatattagtatataaacataattagataatggtcctaannnnnnngatgttaacattcta |
140 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
44063528 |
aaggattgtgagaaaactacctgacatggtttaatttggctatattagtatataaacataattagataatggtcctaattttgttgatgttaacattcta |
44063429 |
T |
|
| Q |
141 |
attgtaatttgtgatagttacatggaccaataaacagaagaccctaattgatttagattaatttgatgtgaaactacagctcatgcaaattaagtcaaat |
240 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44063428 |
attgtaatttgtgatagttacatggaccaataaacagaagaccctaattgatttagattaatttgatgtgaaactacagctcatgcaaattaagtcaaat |
44063329 |
T |
|
| Q |
241 |
gtcattttcattatgaattgttctttctatttctggtc |
278 |
Q |
| |
|
||||||||||||||| |||||||||||| ||||||||| |
|
|
| T |
44063328 |
gtcattttcattatggattgttctttctttttctggtc |
44063291 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 126 - 278
Target Start/End: Original strand, 44089476 - 44089635
Alignment:
| Q |
126 |
gatgttaacattctaattgtaatttgtgatagttacatggaccaataaacagaag-------accctaattgatttagattaatttgatgtgaaactaca |
218 |
Q |
| |
|
|||||||| ||||||||||||||||||||||| ||||| ||||||||||||||| || ||||||||||| |||||||||||||||||| ||| |
|
|
| T |
44089476 |
gatgttaatattctaattgtaatttgtgatagatacattaaccaataaacagaagtcagaagactctaattgatttggattaatttgatgtgaaagcaca |
44089575 |
T |
|
| Q |
219 |
gctcatgcaaattaagtcaaatgtcattttcattatgaattgttctttctatttctggtc |
278 |
Q |
| |
|
|||||||| |||||||||| ||||||||||| ||||| |||| | ||||||||||||||| |
|
|
| T |
44089576 |
gctcatgctaattaagtcagatgtcattttctttatggattgctttttctatttctggtc |
44089635 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University