View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6431_low_13 (Length: 263)
Name: NF6431_low_13
Description: NF6431
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6431_low_13 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 205; Significance: 1e-112; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 7 - 263
Target Start/End: Original strand, 38333888 - 38334144
Alignment:
| Q |
7 |
ggacatcatcaccgttaacagcctcattcaatgagtttttagtaggtttactagctgcttgttttcttggtttccttgaggatttaccacctttatcctc |
106 |
Q |
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| T |
38333888 |
ggacatcatcaccgttaacagcctcattcaatgagtttttagtaggtttactagctgcttgttttcttggtttccttgaggatttaccacctttatcctc |
38333987 |
T |
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| Q |
107 |
cacaccagcaatagaagatattttatgcttctttagagannnnnnnctctcattagcaacctgagaaagcttgcgaataaaattacaaatcatctacgcg |
206 |
Q |
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| T |
38333988 |
cacaccagcaatagaagatattttatgcttctttagagatttttttctctcattagcaacctgagaaagcttgcgaataaaattacaaatcatctacacg |
38334087 |
T |
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| Q |
207 |
gtcatattcacaatcagataagtggnnnnnnnnntgacaaatcataataacagatat |
263 |
Q |
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| T |
38334088 |
gtcatattcacaatcagataagtggaaaaaaaaatgacaaatcataataacagatat |
38334144 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 7 - 144
Target Start/End: Original strand, 38341641 - 38341778
Alignment:
| Q |
7 |
ggacatcatcaccgttaacagcctcattcaatgagtttttagtaggtttactagctgcttgttttcttggtttccttgaggatttaccacctttatcctc |
106 |
Q |
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||||||||||| | | |||||||| || |||| |||||||| ||| || | ||||||||||||| || | |||||||| ||||| |||||||||||| |
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| T |
38341641 |
ggacatcatcaacctcaacagccttgttaaatgggtttttagacagttcacgaactgcttgttttctcggctgccttgaggttttactacctttatcctc |
38341740 |
T |
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| Q |
107 |
cacaccagcaatagaagatattttatgcttctttagag |
144 |
Q |
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| T |
38341741 |
cacaccaacaataggagatcttttatgcttctttagag |
38341778 |
T |
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