View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6431_low_14 (Length: 259)
Name: NF6431_low_14
Description: NF6431
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6431_low_14 |
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Alignment Details
Target: chr1 (Bit Score: 207; Significance: 1e-113; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 9 - 239
Target Start/End: Complemental strand, 6906040 - 6905810
Alignment:
| Q |
9 |
caataaaataacttatcgtaaacaaaatggagcgtaatcaaaaacatatcaaaaagttcaattgcagccatacctcaatgtgttgcggattgcttgttga |
108 |
Q |
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| T |
6906040 |
caataaaataacttatcgtaaacaaaatggagcgtaatcaataacatatcaaaaagttcaattgcagccatacctcaatgtgttgcggattgcttgttga |
6905941 |
T |
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| Q |
109 |
attaggttttgttaattaaaattcttgtaatagtgtatgcgcggagcataatagtagagtaaagaaaagcaacagaatggaaaaagagacgcaagaggca |
208 |
Q |
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| T |
6905940 |
attaggttttgttaattaaaattcttgtaatagtgtacgcgccgagcataatagtagagtaaagaaaagcaacagaatagaaaaagagacgcaagaggca |
6905841 |
T |
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| Q |
209 |
agacacacacaacagagggagagggagaggg |
239 |
Q |
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| T |
6905840 |
agacacacacaacagaggaagagagagaggg |
6905810 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 61 - 219
Target Start/End: Complemental strand, 6924638 - 6924474
Alignment:
| Q |
61 |
aaagttcaattgcagccatacctcaatgtgttgcggattgcttgttgaattaggttttgttaattaaaattcttgtaa----tagtgtatgcgcggagca |
156 |
Q |
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|||||| ||||||||||||||||||| |||||| ||||| |||||||||||||||| |||||||| || |||||||| ||||||| || | ||| |
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| T |
6924638 |
aaagttgaattgcagccatacctcaacatgttgccgattgattgttgaattaggtttagttaattataactcttgtaattagtagtgtacgcatcgtgca |
6924539 |
T |
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| Q |
157 |
taatagtagagtaaagaaaagcaacagaatgg--aaaaagagacgcaagaggcaagacacacaca |
219 |
Q |
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| T |
6924538 |
taatggtagagtaacgaaaagtaacagaacagaaaaaaagagatgcaagaggcaagacacacaca |
6924474 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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