View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6431_low_17 (Length: 248)

Name: NF6431_low_17
Description: NF6431
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6431_low_17
NF6431_low_17
[»] chr5 (21 HSPs)
chr5 (1-234)||(10747213-10747446)
chr5 (1-234)||(10564805-10565038)
chr5 (1-198)||(10740897-10741094)
chr5 (1-198)||(10717138-10717335)
chr5 (1-199)||(10611523-10611721)
chr5 (1-234)||(11048855-11049088)
chr5 (1-199)||(10604565-10604763)
chr5 (1-199)||(7192818-7193016)
chr5 (6-234)||(10216952-10217180)
chr5 (5-199)||(19606067-19606261)
chr5 (6-196)||(10763336-10763526)
chr5 (6-199)||(10580804-10581010)
chr5 (5-199)||(10558715-10558909)
chr5 (5-199)||(9836530-9836724)
chr5 (6-199)||(10652405-10652598)
chr5 (11-130)||(10550666-10550785)
chr5 (10-197)||(10588637-10588824)
chr5 (1-186)||(10660283-10660468)
chr5 (5-104)||(9825008-9825107)
chr5 (5-104)||(9850903-9851001)
chr5 (64-105)||(10745873-10745917)
[»] chr6 (5 HSPs)
chr6 (8-207)||(12932084-12932283)
chr6 (8-199)||(12948457-12948648)
chr6 (8-234)||(12957856-12958082)
chr6 (8-199)||(12899383-12899574)
chr6 (8-199)||(12907003-12907194)
[»] chr2 (1 HSPs)
chr2 (8-199)||(17923608-17923799)
[»] chr3 (1 HSPs)
chr3 (20-108)||(31467379-31467467)
[»] chr1 (1 HSPs)
chr1 (63-130)||(39898955-39899022)


Alignment Details
Target: chr5 (Bit Score: 234; Significance: 1e-129; HSPs: 21)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 1 - 234
Target Start/End: Original strand, 10747213 - 10747446
Alignment:
Q  1 atctatactagaacaacacgttaaaatcttaactaaatttcggtgtctaatgttcttgagtacattacattcaacaatgaaactcttgtgagctcccttc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10747213 atctatactagaacaacacgttaaaatcttaactaaatttcggtgtctaatgttcttgagtacattacattcaacaatgaaactcttgtgagctcccttc 10747312  T
Q  101 ttttgaaggtttaggacttttacggcaacagcattattttcggacacaagatttcctttgtacactgaaccaaaacttcctgatccgatcaagtttctac 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10747313 ttttgaaggtttaggacttttacggcaacagcattattttcggacacaagatttcctttgtacactgaaccaaaacttcctgatccgatcaagtttctac 10747412  T
Q  201 ttgagaaaccgtttgttccatgatgtaagtcttg 234  Q
    ||||||||||||||||||||||||||||||||||    
T  10747413 ttgagaaaccgtttgttccatgatgtaagtcttg 10747446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 1 - 234
Target Start/End: Complemental strand, 10565038 - 10564805
Alignment:
Q  1 atctatactagaacaacacgttaaaatcttaactaaatttcggtgtctaatgttcttgagtacattacattcaacaatgaaactcttgtgagctcccttc 100  Q
    |||| |||| |||||||| ||||||| |||||||||||||||||||| ||| || |||||| ||||||||||||||||||||||||||||||||||||||    
T  10565038 atctgtacttgaacaacaggttaaaaccttaactaaatttcggtgtcgaatatttttgagtgcattacattcaacaatgaaactcttgtgagctcccttc 10564939  T
Q  101 ttttgaaggtttaggacttttacggcaacagcattattttcggacacaagatttcctttgtacactgaaccaaaacttcctgatccgatcaagtttctac 200  Q
    ||||| ||||| ||||| |||||||||||| |||||| ||| |||||||||||||||||||||||   |||||||||||||||||| ||||||||||||     
T  10564938 ttttggaggttcaggacctttacggcaacaacattatcttctgacacaagatttcctttgtacacaagaccaaaacttcctgatcctatcaagtttctag 10564839  T
Q  201 ttgagaaaccgtttgttccatgatgtaagtcttg 234  Q
    ||||||| || |  ||||| |||||||| |||||    
T  10564838 ttgagaacccatcggttccttgatgtaattcttg 10564805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 1 - 198
Target Start/End: Original strand, 10740897 - 10741094
Alignment:
Q  1 atctatactagaacaacacgttaaaatcttaactaaatttcggtgtctaatgttcttgagtacattacattcaacaatgaaactcttgtgagctcccttc 100  Q
    |||| ||||||||||||| || ||||||||||||||||||||||||||||| || |||||| ||||||||||||||||||||||||||||||||||||||    
T  10740897 atctgtactagaacaacatgtcaaaatcttaactaaatttcggtgtctaatatttttgagtgcattacattcaacaatgaaactcttgtgagctcccttc 10740996  T
Q  101 ttttgaaggtttaggacttttacggcaacagcattattttcggacacaagatttcctttgtacactgaaccaaaacttcctgatccgatcaagtttct 198  Q
    ||||  ||||| | ||| |||||||||||| |||| | ||| | ||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  10740997 tttttgaggttcaagacctttacggcaacaacattgtcttctgtcacaagatttcctttgtacacagaaccaaaacttcctgatccgatcaagtttct 10741094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 1 - 198
Target Start/End: Original strand, 10717138 - 10717335
Alignment:
Q  1 atctatactagaacaacacgttaaaatcttaactaaatttcggtgtctaatgttcttgagtacattacattcaacaatgaaactcttgtgagctcccttc 100  Q
    |||| ||||||||||||| ||||| ||||| |||| |||||||||||| || || || ||| ||||||||||||||||||||||||||||||||||||||    
T  10717138 atctgtactagaacaacatgttaatatcttcactagatttcggtgtctgatattttttagtgcattacattcaacaatgaaactcttgtgagctcccttc 10717237  T
Q  101 ttttgaaggtttaggacttttacggcaacagcattattttcggacacaagatttcctttgtacactgaaccaaaacttcctgatccgatcaagtttct 198  Q
    ||||  ||||| | ||| |||||||||||| |||| | ||| ||||||||||||||||||||||| |||||||||||||||||||| |||||||||||    
T  10717238 tttttgaggttcaagacctttacggcaacaacattgtcttctgacacaagatttcctttgtacacagaaccaaaacttcctgatccaatcaagtttct 10717335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 1 - 199
Target Start/End: Complemental strand, 10611721 - 10611523
Alignment:
Q  1 atctatactagaacaacacgttaaaatcttaactaaatttcggtgtctaatgttcttgagtacattacattcaacaatgaaactcttgtgagctcccttc 100  Q
    |||| ||||||||||||| ||||||||||||||||||||||||||||||||    || ||| |||||||||||||||||||||||||||||||||| ||     
T  10611721 atctgtactagaacaacatgttaaaatcttaactaaatttcggtgtctaataaattttagtgcattacattcaacaatgaaactcttgtgagctccattg 10611622  T
Q  101 ttttgaaggtttaggacttttacggcaacagcattattttcggacacaagatttcctttgtacactgaaccaaaacttcctgatccgatcaagtttcta 199  Q
    ||||| ||||| | ||| ||||  |||||| |||| | ||| ||||||||||||||| |||||||   |||||||||||||||||||||||||||||||    
T  10611621 ttttggaggttgaagacctttatagcaacaacattgtcttctgacacaagatttcctctgtacacatcaccaaaacttcctgatccgatcaagtttcta 10611523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 1 - 234
Target Start/End: Original strand, 11048855 - 11049088
Alignment:
Q  1 atctatactagaacaacacgttaaaatcttaactaaatttcggtgtctaatgttcttgagtacattacattcaacaatgaaactcttgtgagctcccttc 100  Q
    |||| ||||||||||||| ||||||| ||||||||| ||||||||||||||||| |||||| ||||||||||||||||||||||||||  |||||| ||     
T  11048855 atctgtactagaacaacaggttaaaaccttaactaagtttcggtgtctaatgtttttgagtgcattacattcaacaatgaaactcttgctagctccattg 11048954  T
Q  101 ttttgaaggtttaggacttttacggcaacagcattattttcggacacaagatttcctttgtacactgaaccaaaacttcctgatccgatcaagtttctac 200  Q
    ||||| ||||| | |||||| || |||||| |||||  ||| ||||||||||||||| ||||||| ||||| |||| ||||||||| ||||||||| ||     
T  11048955 ttttggaggttgaagactttcacagcaacaacattaccttccgacacaagatttcctctgtacacagaaccgaaacctcctgatccaatcaagtttttat 11049054  T
Q  201 ttgagaaaccgtttgttccatgatgtaagtcttg 234  Q
     |||||| || |  ||||| |||||||| |||||    
T  11049055 ctgagaatccatcggttccttgatgtaaatcttg 11049088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 1 - 199
Target Start/End: Complemental strand, 10604763 - 10604565
Alignment:
Q  1 atctatactagaacaacacgttaaaatcttaactaaatttcggtgtctaatgttcttgagtacattacattcaacaatgaaactcttgtgagctcccttc 100  Q
    |||| ||||||||||||| |||||||  | ||||||||| |||||||| ||  | |||||| |||||||||||||||||||| ||||||| |||||||||    
T  10604763 atctgtactagaacaacatgttaaaacttgaactaaattccggtgtcttatagttttgagtgcattacattcaacaatgaaattcttgtgtgctcccttc 10604664  T
Q  101 ttttgaaggtttaggacttttacggcaacagcattattttcggacacaagatttcctttgtacactgaaccaaaacttcctgatccgatcaagtttcta 199  Q
    ||||| ||||| ||||| ||||| |||||  |||||| ||| ||||||||||||||| ||||||| ||||||||||||||| |||| ||||||||||||    
T  10604663 ttttggaggttcaggacctttacagcaactacattatcttctgacacaagatttcctctgtacacagaaccaaaacttcctaatccaatcaagtttcta 10604565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 1 - 199
Target Start/End: Complemental strand, 7193016 - 7192818
Alignment:
Q  1 atctatactagaacaacacgttaaaatcttaactaaatttcggtgtctaatgttcttgagtacattacattcaacaatgaaactcttgtgagctcccttc 100  Q
    |||| |||| |||||||| || ||||||||||| |||||||| |||||||| || || ||| ||||||||||| ||||||||||||||||||||||||||    
T  7193016 atctgtactggaacaacatgtcaaaatcttaaccaaatttcgatgtctaatattttttagtgcattacattcagcaatgaaactcttgtgagctcccttc 7192917  T
Q  101 ttttgaaggtttaggacttttacggcaacagcattattttcggacacaagatttcctttgtacactgaaccaaaacttcctgatccgatcaagtttcta 199  Q
    ||||||||||| | ||| || ||||||||| | |||| ||| ||  ||||||||||||||||||| |||||||| ||||||||||| |  |||||||||    
T  7192916 ttttgaaggttcatgaccttcacggcaacaactttatcttctgattcaagatttcctttgtacacagaaccaaagcttcctgatccaactaagtttcta 7192818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 6 - 234
Target Start/End: Original strand, 10216952 - 10217180
Alignment:
Q  6 tactagaacaacacgttaaaatcttaactaaatttcggtgtctaatgttcttgagtacattacattcaacaatgaaactcttgtgagctcccttcttttg 105  Q
    ||||||||||||| ||||||| ||||||| | ||||||||||||||||| |||||| |||||||||||||||| |||||||||  |||||| ||||||||    
T  10216952 tactagaacaacatgttaaaaccttaactgagtttcggtgtctaatgtttttgagtgcattacattcaacaataaaactcttgctagctccattcttttg 10217051  T
Q  106 aaggtttaggacttttacggcaacagcattattttcggacacaagatttcctttgtacactgaaccaaaacttcctgatccgatcaagtttctacttgag 205  Q
     ||||||||||| || || |||||| |||||  ||| ||||||||||| ||  | |||||  ||||||||||||||||||| ||||||||| ||   |||    
T  10217052 gaggtttaggaccttcacagcaacaacattaacttctgacacaagattcccgctatacacacaaccaaaacttcctgatccaatcaagtttttatccgag 10217151  T
Q  206 aaaccgtttgttccatgatgtaagtcttg 234  Q
    || || |  ||||| ||||||||||||||    
T  10217152 aacccatcagttccttgatgtaagtcttg 10217180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 5 - 199
Target Start/End: Original strand, 19606067 - 19606261
Alignment:
Q  5 atactagaacaacacgttaaaatcttaactaaatttcggtgtctaatgttcttgagtacattacattcaacaatgaaactcttgtgagctcccttctttt 104  Q
    |||||||||||||| ||||||||||||||||||||||| |||||||| || |||||  |||||||||||  ||| |||||||||||||||||||||||||    
T  19606067 atactagaacaacaagttaaaatcttaactaaatttcgatgtctaatatttttgagagcattacattcagtaataaaactcttgtgagctcccttctttt 19606166  T
Q  105 gaaggtttaggacttttacggcaacagcattattttcggacacaagatttcctttgtacactgaaccaaaacttcctgatccgatcaagtttcta 199  Q
     |||||| ||||| || || |||| | | |||| ||| |||| |||||||||||| ||||| ||||| || | ||||||||| ||||||||||||    
T  19606167 caaggttcaggaccttaacagcaataactttatcttctgacataagatttcctttatacacggaaccgaagcctcctgatccaatcaagtttcta 19606261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 6 - 196
Target Start/End: Original strand, 10763336 - 10763526
Alignment:
Q  6 tactagaacaacacgttaaaatcttaactaaatttcggtgtctaatgttcttgagtacattacattcaacaatgaaactcttgtgagctcccttcttttg 105  Q
    ||||||||||||| |||||||||||||||||||| ||||||  ||| || || ||| |||||||||||||||||||||||||||||||||| || |||||    
T  10763336 tactagaacaacatgttaaaatcttaactaaattccggtgttgaatattttttagtgcattacattcaacaatgaaactcttgtgagctccattgttttg 10763435  T
Q  106 aaggtttaggacttttacggcaacagcattattttcggacacaagatttcctttgtacactgaaccaaaacttcctgatccgatcaagttt 196  Q
     ||||| | ||||||||  ||||||  ||| | ||| ||||||||||||||| |||||||   |||| |||||||||||||||||| ||||    
T  10763436 gaggttgaagacttttatagcaacaatattgtcttctgacacaagatttcctctgtacacatcaccagaacttcctgatccgatcaggttt 10763526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 6 - 199
Target Start/End: Complemental strand, 10581010 - 10580804
Alignment:
Q  6 tactagaacaacacgttaaaatcttaactaaatttcggtgtctaatgttcttgagtacattacattcaacaatgaaactcttgtgagctcccttcttttg 105  Q
    ||||||||||||| |||| || ||| ||||||||| |||||||||| || |||||| |||||||||||||||| ||||||||||||||||| ||||||||    
T  10581010 tactagaacaacatgttagaaccttgactaaattttggtgtctaatatttttgagtgcattacattcaacaataaaactcttgtgagctcctttcttttg 10580911  T
Q  106 aaggtttaggacttttac-------------ggcaacagcattattttcggacacaagatttcctttgtacactgaaccaaaacttcctgatccgatcaa 192  Q
     ||||| | ||| |||||              |||||| |||||| ||| ||||||||||||||||||||||| ||||||||||||||||| |||||||     
T  10580910 gaggttcaagacctttactgcaacaacattatgcaacaacattatcttctgacacaagatttcctttgtacacggaaccaaaacttcctgacccgatcat 10580811  T
Q  193 gtttcta 199  Q
    |||||||    
T  10580810 gtttcta 10580804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 5 - 199
Target Start/End: Complemental strand, 10558909 - 10558715
Alignment:
Q  5 atactagaacaacacgttaaaatcttaactaaatttcggtgtctaatgttcttgagtacattacattcaacaatgaaactcttgtgagctcccttctttt 104  Q
    |||||||||||||| |||||||||||||| | |||||| |||||||| || || ||| ||||||||||   ||| ||||||||||||||||| |||||||    
T  10558909 atactagaacaacaagttaaaatcttaaccagatttcgatgtctaatattttttagtgcattacattcggtaataaaactcttgtgagctccattctttt 10558810  T
Q  105 gaaggtttaggacttttacggcaacagcattattttcggacacaagatttcctttgtacactgaaccaaaacttcctgatccgatcaagtttcta 199  Q
     |||||  ||||| || || |||| | | |||| ||| |||| |||||||||||| ||||| |||||||| | ||||||||| ||||||||||||    
T  10558809 caaggtccaggaccttcacagcaataactttatcttctgacataagatttcctttatacaccgaaccaaagcctcctgatccaatcaagtttcta 10558715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 5 - 199
Target Start/End: Original strand, 9836530 - 9836724
Alignment:
Q  5 atactagaacaacacgttaaaatcttaactaaatttcggtgtctaatgttcttgagtacattacattcaacaatgaaactcttgtgagctcccttctttt 104  Q
    |||||||||||||| |||| || ||| || |||||||| |||||||| || |||||| ||||||||||| |||| |||||||| ||||||||||||||||    
T  9836530 atactagaacaacatgttataaccttgaccaaatttcgatgtctaatatttttgagtgcattacattcagcaataaaactcttatgagctcccttctttt 9836629  T
Q  105 gaaggtttaggacttttacggcaacagcattattttcggacacaagatttcctttgtacactgaaccaaaacttcctgatccgatcaagtttcta 199  Q
      ||||| || || ||||  |||||| | |||| ||  || |||| |||||||||||| || | |||||||||||||||||| ||||| ||||||    
T  9836630 tgaggttcagaacctttatagcaacaactttatcttgtgatacaatatttcctttgtatacggtaccaaaacttcctgatccaatcaaatttcta 9836724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 6 - 199
Target Start/End: Original strand, 10652405 - 10652598
Alignment:
Q  6 tactagaacaacacgttaaaatcttaactaaatttcggtgtctaatgttcttgagtacattacattcaacaatgaaactcttgtgagctcccttcttttg 105  Q
    |||| |||||||| || |||| |||||| |||||||  || || || || || ||| ||||||||||||||| ||| |||||||||| |||||| |||||    
T  10652405 tactcgaacaacatgtcaaaaccttaaccaaatttctatgcctcatattttttagtgcattacattcaacaacgaagctcttgtgagatccctttttttg 10652504  T
Q  106 aaggtttaggacttttacggcaacagcattattttcggacacaagatttcctttgtacactgaaccaaaacttcctgatccgatcaagtttcta 199  Q
    |||||| ||||| |||| ||||||| | |||| ||| ||  ||||||||||||||||||| ||||||||||||||| |||| | || |||||||    
T  10652505 aaggttcaggacctttatggcaacaactttatcttctgatgcaagatttcctttgtacacagaaccaaaacttcctaatccaaccaggtttcta 10652598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 11 - 130
Target Start/End: Complemental strand, 10550785 - 10550666
Alignment:
Q  11 gaacaacacgttaaaatcttaactaaatttcggtgtctaatgttcttgagtacattacattcaacaatgaaactcttgtgagctcccttcttttgaaggt 110  Q
    |||||||| || ||||| ||||||| ||||| ||| ||||| || || ||| ||||||||||| ||||||||||||||||| |||||||||||| |||||    
T  10550785 gaacaacaagtcaaaattttaactagatttctgtgcctaatattttttagtgcattacattcagcaatgaaactcttgtgaactcccttctttttaaggt 10550686  T
Q  111 ttaggacttttacggcaaca 130  Q
    |||||||||||| |||||||    
T  10550685 ttaggacttttatggcaaca 10550666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 10 - 197
Target Start/End: Original strand, 10588637 - 10588824
Alignment:
Q  10 agaacaacacgttaaaatcttaactaaatttcggtgtctaatgttcttgagtacattacattcaacaatgaaactcttgtgagctcccttcttttgaagg 109  Q
    ||||||||| |||||||||||  | |||||||| |||||||  ||||||||| ||||||||||  |||| |||||||| | |||||||||||||| ||||    
T  10588637 agaacaacatgttaaaatcttggccaaatttcgatgtctaacattcttgagtgcattacattcggcaataaaactcttatcagctcccttctttttaagg 10588736  T
Q  110 tttaggacttttacggcaacagcattattttcggacacaagatttcctttgtacactgaaccaaaacttcctgatccgatcaagtttc 197  Q
    || || || || |  |||||||  |||| ||  || || ||| |||||||||| || |||| ||||||||||||||| ||||||||||    
T  10588737 ttcagaaccttgatagcaacagatttatcttgtgatacgagaattcctttgtatacggaacaaaaacttcctgatccaatcaagtttc 10588824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 186
Target Start/End: Original strand, 10660283 - 10660468
Alignment:
Q  1 atctatactagaacaacacgttaaaatcttaactaaatttcggtgtctaatgttcttgagtacattacattcaacaatgaaactcttgtgagctcccttc 100  Q
    |||| |||| |||||||| || |||| ||| || |||||||  || || || || || ||| ||||||||||||||||||| |||||||||||||||||     
T  10660283 atctgtacttgaacaacatgtcaaaaccttgaccaaatttctatgcctcatattttttagtgcattacattcaacaatgaagctcttgtgagctccctta 10660382  T
Q  101 ttttgaaggtttaggacttttacggcaacagcattattttcggacacaagatttcctttgtacactgaaccaaaacttcctgatcc 186  Q
    ||||||||||| || || |||| |||||||   |||| ||| ||  |||||||||||||||| || |||||||||| |||| ||||    
T  10660383 ttttgaaggttcagaacctttatggcaacaaatttatcttctgatgcaagatttcctttgtagacagaaccaaaacctcctaatcc 10660468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 5 - 104
Target Start/End: Complemental strand, 9825107 - 9825008
Alignment:
Q  5 atactagaacaacacgttaaaatcttaactaaatttcggtgtctaatgttcttgagtacattacattcaacaatgaaactcttgtgagctcccttctttt 104  Q
    ||||||||| |||| |||||||||||||| |||||||| |||||||| || |||||| ||||||||||   ||| |||||||||||||||||||||||||    
T  9825107 atactagaaaaacatgttaaaatcttaaccaaatttcgatgtctaatatttttgagttcattacattcggtaataaaactcttgtgagctcccttctttt 9825008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 5 - 104
Target Start/End: Original strand, 9850903 - 9851001
Alignment:
Q  5 atactagaacaacacgttaaaatcttaactaaatttcggtgtctaatgttcttgagtacattacattcaacaatgaaactcttgtgagctcccttctttt 104  Q
    |||||||||||| | |||||||||||||| |||||||| |||||||| || |||||  ||||||||||   ||| |||||||||||| ||||||| ||||    
T  9850903 atactagaacaagaagttaaaatcttaaccaaatttcgatgtctaatatt-ttgagggcattacattccgtaataaaactcttgtgaactcccttttttt 9851001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 64 - 105
Target Start/End: Original strand, 10745873 - 10745917
Alignment:
Q  64 attacattcaacaatgaaactcttg---tgagctcccttcttttg 105  Q
    |||||||||||||||||||||||||   |||||||||||||||||    
T  10745873 attacattcaacaatgaaactcttgacttgagctcccttcttttg 10745917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 108; Significance: 2e-54; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 8 - 207
Target Start/End: Complemental strand, 12932283 - 12932084
Alignment:
Q  8 ctagaacaacacgttaaaatcttaactaaatttcggtgtctaatgttcttgagtacattacattcaacaatgaaactcttgtgagctcccttcttttgaa 107  Q
    ||||||||||| ||||||| |||||| ||||||||||||||||| || |||||| | ||||||||||||||||||||||||||||||||||| ||||| |    
T  12932283 ctagaacaacatgttaaaaccttaaccaaatttcggtgtctaatatttttgagtgcgttacattcaacaatgaaactcttgtgagctccctttttttgca 12932184  T
Q  108 ggtttaggacttttacggcaacagcattattttcggacacaagatttcctttgtacactgaaccaaaacttcctgatccgatcaagtttctacttgagaa 207  Q
    | || | ||| ||||| |||||| |||||| ||| ||||| | |||||||||||| || ||||||||||||||||||||||||| ||||||| |||||||    
T  12932183 gattcaagacctttactgcaacaacattatcttctgacactatatttcctttgtaaacggaaccaaaacttcctgatccgatcatgtttctatttgagaa 12932084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 8 - 199
Target Start/End: Complemental strand, 12948648 - 12948457
Alignment:
Q  8 ctagaacaacacgttaaaatcttaactaaatttcggtgtctaatgttcttgagtacattacattcaacaatgaaactcttgtgagctcccttcttttgaa 107  Q
    ||||||||||| ||||||| |||||| ||||||||||||||||| || || ||| ||||||||||||||||||||||||||||||||||||| || || |    
T  12948648 ctagaacaacatgttaaaaccttaaccaaatttcggtgtctaatattttttagtgcattacattcaacaatgaaactcttgtgagctccctttttctgga 12948549  T
Q  108 ggtttaggacttttacggcaacagcattattttcggacacaagatttcctttgtacactgaaccaaaacttcctgatccgatcaagtttcta 199  Q
    |||| | ||||||||| |||||| |||||| ||| || |||| ||||||| |||| || |||||||||||||||||||||||||||||||||    
T  12948548 ggttcaagacttttactgcaacaacattatcttctgaaacaatatttcctctgtatacggaaccaaaacttcctgatccgatcaagtttcta 12948457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 8 - 234
Target Start/End: Complemental strand, 12958082 - 12957856
Alignment:
Q  8 ctagaacaacacgttaaaatcttaactaaatttcggtgtctaatgttcttgagtacattacattcaacaatgaaactcttgtgagctcccttcttttgaa 107  Q
    ||||||||||| ||||||| | |||| ||||||||||||||||| || |||||| | ||||||||||||||||||||||||||||||||||| || || |    
T  12958082 ctagaacaacatgttaaaaccctaaccaaatttcggtgtctaatatttttgagtgcgttacattcaacaatgaaactcttgtgagctccctttttctgga 12957983  T
Q  108 ggtttaggacttttacggcaacagcattattttcggacacaagatttcctttgtacactgaaccaaaacttcctgatccgatcaagtttctacttgagaa 207  Q
    |||| | ||||||||  |||||| |||||| ||| || |||| ||||||| |||| || |||||||||||||||||||||||||||||||||  ||||||    
T  12957982 ggttcaagacttttattgcaacaacattatcttctgaaacaatatttcctctgtatacggaaccaaaacttcctgatccgatcaagtttctatctgagaa 12957883  T
Q  208 accgtttgttccatgatgtaagtcttg 234  Q
     || || ||||||  |||||| |||||    
T  12957882 tccattggttccaacatgtaattcttg 12957856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 8 - 199
Target Start/End: Complemental strand, 12899574 - 12899383
Alignment:
Q  8 ctagaacaacacgttaaaatcttaactaaatttcggtgtctaatgttcttgagtacattacattcaacaatgaaactcttgtgagctcccttcttttgaa 107  Q
    ||||||||||| ||||||| |||||| ||||||||||||| |||||| |||||| |||||||||| | |||||||||||||||||| ||||| ||||| |    
T  12899574 ctagaacaacatgttaaaaccttaaccaaatttcggtgtcgaatgtttttgagtgcattacattctaaaatgaaactcttgtgagcaccctttttttgca 12899475  T
Q  108 ggtttaggacttttacggcaacagcattattttcggacacaagatttcctttgtacactgaaccaaaacttcctgatccgatcaagtttcta 199  Q
    | || | ||| ||||| |||||| |||||| ||| || || | ||||||| |||| || |||||||||||||||||||||||||||||||||    
T  12899474 gattcaagacctttactgcaacaacattatcttctgaaactatatttcctctgtatacggaaccaaaacttcctgatccgatcaagtttcta 12899383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 8 - 199
Target Start/End: Complemental strand, 12907194 - 12907003
Alignment:
Q  8 ctagaacaacacgttaaaatcttaactaaatttcggtgtctaatgttcttgagtacattacattcaacaatgaaactcttgtgagctcccttcttttgaa 107  Q
    ||||||||||| ||||||| |||||| ||||||| ||||||||| || |||||| | |||||||||||||||||||| |||||||| |||||  |||| |    
T  12907194 ctagaacaacatgttaaaaccttaaccaaatttctgtgtctaatatttttgagtgcgttacattcaacaatgaaacttttgtgagcgccctttgtttgga 12907095  T
Q  108 ggtttaggacttttacggcaacagcattattttcggacacaagatttcctttgtacactgaaccaaaacttcctgatccgatcaagtttcta 199  Q
    |||| | ||| ||||| |||||| |||||| ||| || |||| |||||||||||| || ||||||||||||||||||||||||| |||||||    
T  12907094 ggttcaagacctttactgcaacaacattatcttctgaaacaatatttcctttgtatacggaaccaaaacttcctgatccgatcatgtttcta 12907003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 96; Significance: 3e-47; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 8 - 199
Target Start/End: Original strand, 17923608 - 17923799
Alignment:
Q  8 ctagaacaacacgttaaaatcttaactaaatttcggtgtctaatgttcttgagtacattacattcaacaatgaaactcttgtgagctcccttcttttgaa 107  Q
    ||||||||||| ||||||| |||||| ||||||||||||||||| || |||||| | ||||||||||||| ||||||||||||||||||||| || || |    
T  17923608 ctagaacaacatgttaaaaccttaaccaaatttcggtgtctaatatttttgagtgcgttacattcaacaacgaaactcttgtgagctccctttttatgga 17923707  T
Q  108 ggtttaggacttttacggcaacagcattattttcggacacaagatttcctttgtacactgaaccaaaacttcctgatccgatcaagtttcta 199  Q
    |||| | |||||| || |||||| |||||| ||| || |||| ||||||| |||| || ||||||||||||||||||||||||| |||||||    
T  17923708 ggttcaagactttaactgcaacaacattatcttctgaaacaatatttcctctgtatacggaaccaaaacttcctgatccgatcatgtttcta 17923799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 20 - 108
Target Start/End: Original strand, 31467379 - 31467467
Alignment:
Q  20 gttaaaatcttaactaaatttcggtgtctaatgttcttgagtacattacattcaacaatgaaactcttgtgagctcccttcttttgaag 108  Q
    |||||||||||||| ||||||||||||||||| || |||||| |||| |||||| ||| |||||||||||||||||| ||||| |||||    
T  31467379 gttaaaatcttaaccaaatttcggtgtctaatatttttgagtgcattgcattcagcaaggaaactcttgtgagctcctttcttatgaag 31467467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 63 - 130
Target Start/End: Original strand, 39898955 - 39899022
Alignment:
Q  63 cattacattcaacaatgaaactcttgtgagctcccttcttttgaaggtttaggacttttacggcaaca 130  Q
    ||||||||||  |||||||||| || |||||||| ||||| ||||||||||| || ||||| ||||||    
T  39898955 cattacattcggcaatgaaacttttatgagctcctttcttctgaaggtttagaacctttacagcaaca 39899022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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