View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6431_low_2 (Length: 532)

Name: NF6431_low_2
Description: NF6431
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6431_low_2
NF6431_low_2
[»] chr8 (4 HSPs)
chr8 (18-527)||(38341641-38342131)
chr8 (390-527)||(38333888-38334025)
chr8 (179-208)||(16515088-16515117)
chr8 (235-303)||(45000131-45000198)
[»] chr3 (5 HSPs)
chr3 (235-338)||(37549926-37550029)
chr3 (100-151)||(31148873-31148924)
chr3 (269-312)||(20642070-20642114)
chr3 (91-144)||(44442264-44442321)
chr3 (235-279)||(48507450-48507494)
[»] chr2 (7 HSPs)
chr2 (235-338)||(37422857-37422960)
chr2 (161-242)||(21449705-21449781)
chr2 (131-208)||(41873714-41873792)
chr2 (244-292)||(13728636-13728685)
chr2 (159-196)||(37423155-37423192)
chr2 (241-337)||(41873557-41873654)
chr2 (235-309)||(34957894-34957970)
[»] chr4 (8 HSPs)
chr4 (235-339)||(16502583-16502688)
chr4 (235-338)||(53504679-53504782)
chr4 (245-292)||(38870592-38870639)
chr4 (235-309)||(40020673-40020752)
chr4 (235-331)||(3479153-3479248)
chr4 (176-208)||(38870697-38870729)
chr4 (91-149)||(16502241-16502299)
chr4 (176-206)||(49445045-49445075)
[»] chr1 (6 HSPs)
chr1 (236-331)||(19607208-19607304)
chr1 (230-306)||(11046900-11046978)
chr1 (237-339)||(13818793-13818895)
chr1 (156-208)||(40077026-40077078)
chr1 (173-208)||(50845719-50845754)
chr1 (91-144)||(46395985-46396042)
[»] scaffold0493 (1 HSPs)
scaffold0493 (225-292)||(4167-4234)
[»] chr6 (3 HSPs)
chr6 (91-150)||(779494-779553)
chr6 (131-205)||(10525381-10525454)
chr6 (235-303)||(10525257-10525324)
[»] chr7 (3 HSPs)
chr7 (235-281)||(45249228-45249274)
chr7 (156-203)||(8530377-8530423)
chr7 (235-322)||(44208508-44208595)
[»] chr5 (10 HSPs)
chr5 (235-337)||(29465695-29465797)
chr5 (242-338)||(15047156-15047253)
chr5 (234-279)||(29075674-29075719)
chr5 (83-128)||(37910342-37910387)
chr5 (113-152)||(19176059-19176098)
chr5 (87-145)||(22771161-22771219)
chr5 (235-305)||(31673991-31674063)
chr5 (269-312)||(21524218-21524262)
chr5 (269-312)||(21534778-21534822)
chr5 (156-208)||(37910257-37910309)


Alignment Details
Target: chr8 (Bit Score: 414; Significance: 0; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 414; E-Value: 0
Query Start/End: Original strand, 18 - 527
Target Start/End: Complemental strand, 38342131 - 38341641
Alignment:
Q  18 taaatatatgttattatgatttgtcatctttttcacgtctctgatttgtgtttctgattgtgtagttgatttgtgttgggatatagaataatggctaatt 117  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38342131 taaatatatgttattatgatttgtcatctttttcacttctctgatttgtgtttctgattgtgtagttgatttgtgttgggatatagaataatggctaatt 38342032  T
Q  118 agagtagttaatctagttaagagttgttatagtcagtcagttagttattcggattggttagagagtatgtgtataaataagagaacacaaaaggttagat 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||    
T  38342031 agagtagttaatctagttaagagttgttatagtcagtcagttagttattcggattggttagagagtatgtgtataaataggagaacacaaa-ggttagat 38341933  T
Q  218 aaagagtatcttttgaatattgtaaaggggaaacccttggaggagagattatctcccattctttcctatttcttagtaaaagtgttctttctattccatt 317  Q
    |                  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38341932 a------------------ttgtaaaggggaaacccttggaggagagattatctcccattctttcctatttcttagtaaaagtgttctttctattccatt 38341851  T
Q  318 caattgttgggttcttaacaatacatcattttatttgcaatctttctcagaatgctaacgggagnnnnnnncctctaaagaagcataaaagatctcctat 417  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||    
T  38341850 caattgttgggttcttaacaatacatcattttatttgcaatctttctcagaatgctaacgggagaaaaaaacctctaaagaagcataaaagatctcctat 38341751  T
Q  418 tgttggtgtggaggataaaggtagtaaaacctcaaggcagccgagaaaacaagcagttcgtgaactgtctaaaaacccatttaacaaggctgttgaggtt 517  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38341750 tgttggtgtggaggataaaggtagtaaaacctcaaggcagccgagaaaacaagcagttcgtgaactgtctaaaaacccatttaacaaggctgttgaggtt 38341651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 390 - 527
Target Start/End: Complemental strand, 38334025 - 38333888
Alignment:
Q  390 ctctaaagaagcataaaagatctcctattgttggtgtggaggataaaggtagtaaaacctcaaggcagccgagaaaacaagcagttcgtgaactgtctaa 489  Q
    |||||||||||||||||| |||| |||||| ||||||||||||||||||| ||||| |||||||| | || ||||||||||||| | || |||   ||||    
T  38334025 ctctaaagaagcataaaatatcttctattgctggtgtggaggataaaggtggtaaatcctcaaggaaaccaagaaaacaagcagctagtaaacctactaa 38333926  T
Q  490 aaacccatttaacaaggctgttgaggttgatgatgtcc 527  Q
    |||| |||| ||  |||||||| | | |||||||||||    
T  38333925 aaactcattgaatgaggctgttaacggtgatgatgtcc 38333888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 179 - 208
Target Start/End: Original strand, 16515088 - 16515117
Alignment:
Q  179 agagtatgtgtataaataagagaacacaaa 208  Q
    ||||||||||||||||||||||||||||||    
T  16515088 agagtatgtgtataaataagagaacacaaa 16515117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 235 - 303
Target Start/End: Complemental strand, 45000198 - 45000131
Alignment:
Q  235 tattgtaaaggggaaacccttggaggagagattatctcccattctttcctatttcttagtaaaagtgtt 303  Q
    |||||| ||||||||||||||| |||||| ||| |||||  |||| |||||||||||| ||||| ||||    
T  45000198 tattgtgaaggggaaacccttg-aggagatattctctcctgttctatcctatttcttaataaaattgtt 45000131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 60; Significance: 2e-25; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 235 - 338
Target Start/End: Original strand, 37549926 - 37550029
Alignment:
Q  235 tattgtaaaggggaaacccttggaggagagattatctcccattctttcctatttcttagtaaaagtgttctttctattccattcaattgttgggttctta 334  Q
    |||||| |||||||||| ||||||||||||||||||||| ||||| || |||||||||   ||||||||||||||||||||||| ||| |||||||| ||    
T  37549926 tattgtgaaggggaaactcttggaggagagattatctcctattctatcatatttcttaaataaagtgttctttctattccattccattcttgggttccta 37550025  T
Q  335 acaa 338  Q
    ||||    
T  37550026 acaa 37550029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 100 - 151
Target Start/End: Complemental strand, 31148924 - 31148873
Alignment:
Q  100 atagaataatggctaattagagtagttaatctagttaagagttgttatagtc 151  Q
    |||||||| ||| ||||||||||||||||  |||||||||||||||| ||||    
T  31148924 atagaatagtggttaattagagtagttaaagtagttaagagttgttacagtc 31148873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 269 - 312
Target Start/End: Complemental strand, 20642114 - 20642070
Alignment:
Q  269 tctcccattctttccta-tttcttagtaaaagtgttctttctatt 312  Q
    ||||||||||||||||| ||||||| ||||||| |||||||||||    
T  20642114 tctcccattctttcctattttcttaataaaagttttctttctatt 20642070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 91 - 144
Target Start/End: Complemental strand, 44442321 - 44442264
Alignment:
Q  91 tgttgggatatagaataatggctaatta----gagtagttaatctagttaagagttgt 144  Q
    |||| |||||||||||||||||||||||    || |||||||| ||||||||||||||    
T  44442321 tgttaggatatagaataatggctaattaattagaatagttaatgtagttaagagttgt 44442264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 235 - 279
Target Start/End: Original strand, 48507450 - 48507494
Alignment:
Q  235 tattgtaaaggggaaacccttggaggagagattatctcccattct 279  Q
    |||||| || ||||||||||||||||||||||| ||||| |||||    
T  48507450 tattgtgaaagggaaacccttggaggagagattctctcctattct 48507494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 52; Significance: 1e-20; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 235 - 338
Target Start/End: Complemental strand, 37422960 - 37422857
Alignment:
Q  235 tattgtaaaggggaaacccttggaggagagattatctcccattctttcctatttcttagtaaaagtgttctttctattccattcaattgttgggttctta 334  Q
    |||||| |||| ||||||||||||||||||||| ||||| ||||| |||||||||||  |||||||||||||||| |   |||||||| |||||||| ||    
T  37422960 tattgtgaaggtgaaacccttggaggagagattctctcctattctatcctatttcttcataaaagtgttctttctttggaattcaatttttgggttccta 37422861  T
Q  335 acaa 338  Q
    ||||    
T  37422860 acaa 37422857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 161 - 242
Target Start/End: Complemental strand, 21449781 - 21449705
Alignment:
Q  161 gttattcggattggttagagagtatgtgtataaataagagaacacaaaaggttagataaagagtatcttttgaatattgtaa 242  Q
    |||||| |||||  |||||||||||||||||||||| ||||||| |||| ||    ||||||||||||||||||||||||||    
T  21449781 gttatttggattacttagagagtatgtgtataaataggagaaca-aaaatgt----taaagagtatcttttgaatattgtaa 21449705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 131 - 208
Target Start/End: Complemental strand, 41873792 - 41873714
Alignment:
Q  131 tagttaagagttgttatagtcagtcagttagttattcggattggttagagagtatgtgtataaa-taagagaacacaaa 208  Q
    ||||||||||||| |||||| ||| |   ||||||| ||||| ||||||||||||||||||||| || |||||||||||    
T  41873792 tagttaagagttgctatagttagttacaaagttatttggattagttagagagtatgtgtataaattaggagaacacaaa 41873714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 244 - 292
Target Start/End: Original strand, 13728636 - 13728685
Alignment:
Q  244 ggggaaacccttggaggagaga-ttatctcccattctttcctatttctta 292  Q
    |||||||||||||||||||| | || ||||| ||||||||||||||||||    
T  13728636 ggggaaacccttggaggagatatttctctcctattctttcctatttctta 13728685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 159 - 196
Target Start/End: Complemental strand, 37423192 - 37423155
Alignment:
Q  159 tagttattcggattggttagagagtatgtgtataaata 196  Q
    |||||||| ||||| |||||||||||||||||||||||    
T  37423192 tagttatttggattagttagagagtatgtgtataaata 37423155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 241 - 337
Target Start/End: Complemental strand, 41873654 - 41873557
Alignment:
Q  241 aaaggggaaacccttggaggagagattatctcccattctttccta-tttcttagtaaaagtgttctttctattccattcaattgttgggttcttaaca 337  Q
    ||||||||||| |||||||||||||||||||||   |||||| || ||||||| |  |   |||||||||||||||||||  | |||||||| |||||    
T  41873654 aaaggggaaactcttggaggagagattatctcctggtctttcttattttcttaatttagtggttctttctattccattcagctcttgggttcctaaca 41873557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 235 - 309
Target Start/End: Complemental strand, 34957970 - 34957894
Alignment:
Q  235 tattgtaaaggggaaacccttggaggagaga-ttatctcccattctttcctatttc-ttagtaaaagtgttctttct 309  Q
    |||||| |||| | ||||||||||||||||| || ||||| ||| ||||||||||| ||| ||||||||||| ||||    
T  34957970 tattgtgaaggtgtaacccttggaggagagatttctctcctattatttcctatttctttattaaaagtgttcgttct 34957894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 235 - 339
Target Start/End: Original strand, 16502583 - 16502688
Alignment:
Q  235 tattgtaaaggggaaacccttggaggagaga-ttatctcccattctttcctatttcttagtaaaagtgttctttctattccattcaattgttgggttctt 333  Q
    |||||| |||||||||||||||||||||||| || ||||| ||||| || ||||||||| || ||||||||||||||    || ||||| |||||||| |    
T  16502583 tattgtgaaggggaaacccttggaggagagatttctctcctattctatcatatttcttaatataagtgttctttctaaagaatccaattcttgggttcct 16502682  T
Q  334 aacaat 339  Q
    ||||||    
T  16502683 aacaat 16502688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 235 - 338
Target Start/End: Original strand, 53504679 - 53504782
Alignment:
Q  235 tattgtaaaggggaaacccttggaggagagattatctcccattctttcctatttcttagtaaaagtgttctttctattccattcaattgttgggttctta 334  Q
    |||||| ||||||||||||||||||||| |||| || ||  |||| || |||||||||    ||||||| |||||||||||||||||| || ||||| ||    
T  53504679 tattgtgaaggggaaacccttggaggagtgattctcccctgttctatcatatttcttaaattaagtgttttttctattccattcaattatttggttccta 53504778  T
Q  335 acaa 338  Q
    ||||    
T  53504779 acaa 53504782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 245 - 292
Target Start/End: Complemental strand, 38870639 - 38870592
Alignment:
Q  245 gggaaacccttggaggagagattatctcccattctttcctatttctta 292  Q
    |||||||||||| |||||||||||||||||| ||| ||||||||||||    
T  38870639 gggaaacccttgcaggagagattatctcccactctatcctatttctta 38870592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 235 - 309
Target Start/End: Complemental strand, 40020752 - 40020673
Alignment:
Q  235 tattgtaaaggggaaacccttggaggagagatt-atctccc-attctttcctattt---cttagtaaaagtgttctttct 309  Q
    |||||| |||||||| |||||| |||||||||| ||||||| ||||||||||||||   |||| ||||||||||||||||    
T  40020752 tattgtgaaggggaatcccttgaaggagagatttatctccctattctttcctattttttcttaataaaagtgttctttct 40020673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 235 - 331
Target Start/End: Complemental strand, 3479248 - 3479153
Alignment:
Q  235 tattgtaaaggggaaacccttggaggagagattatctcccattctttcctatttcttagtaaaagtgttctttctattccattcaattgttgggttc 331  Q
    |||||| ||||||||||||||| |||||||||| ||||  ||||  || |||||||||   |||||||||||||| ||  |||||||| ||||||||    
T  3479248 tattgtcaaggggaaacccttg-aggagagattctctcttattccatcatatttcttaaataaagtgttctttcttttgaattcaattcttgggttc 3479153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 176 - 208
Target Start/End: Complemental strand, 38870729 - 38870697
Alignment:
Q  176 tagagagtatgtgtataaataagagaacacaaa 208  Q
    |||||||||||||||||||||||||||||||||    
T  38870729 tagagagtatgtgtataaataagagaacacaaa 38870697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 91 - 149
Target Start/End: Original strand, 16502241 - 16502299
Alignment:
Q  91 tgttgggatatagaataatggctaattagagtagttaatctagttaagagttgttatag 149  Q
    |||| |||||||  |||||||| |||||| ||||||||  |||||||||||||||||||    
T  16502241 tgttaggatatattataatggccaattagtgtagttaaagtagttaagagttgttatag 16502299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 176 - 206
Target Start/End: Complemental strand, 49445075 - 49445045
Alignment:
Q  176 tagagagtatgtgtataaataagagaacaca 206  Q
    |||||||||||||||||||||||||||||||    
T  49445075 tagagagtatgtgtataaataagagaacaca 49445045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 236 - 331
Target Start/End: Complemental strand, 19607304 - 19607208
Alignment:
Q  236 attgtaaaggggaaacccttggaggagagattatctcccattctttccta-tttcttagtaaaagtgttctttctattccattcaattgttgggttc 331  Q
    ||||| |||||||||||||||||||||||||| ||||| | |||||| || ||||||| | ||| |||||||| |||||||| |||||  |||||||    
T  19607304 attgtgaaggggaaacccttggaggagagattctctcctactctttcttattttcttaattaaattgttctttatattccatccaattactgggttc 19607208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 230 - 306
Target Start/End: Original strand, 11046900 - 11046978
Alignment:
Q  230 ttgaatattgtaaaggggaaacccttggaggagaga-ttatctcccattctttccta-tttcttagtaaaagtgttctt 306  Q
    ||||| ||||| |||||||||||||||||| ||||| |||||||| ||||||||||| ||||||| |||||| ||||||    
T  11046900 ttgaacattgtgaaggggaaacccttggagtagagatttatctcctattctttcctattttcttaataaaagagttctt 11046978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 237 - 339
Target Start/End: Complemental strand, 13818895 - 13818793
Alignment:
Q  237 ttgtaaaggggaaacccttggaggagagattatctcccattctttcctatttcttagtaaaagtgttctttctattccattcaattgttgggttcttaac 336  Q
    |||| ||||||||||||||| |||||||||| ||||||||| | || ||||||||  | ||||| |||||||| |   |||||||| ||||| || ||||    
T  13818895 ttgtgaaggggaaacccttgaaggagagattctctcccattttatcatatttcttcatgaaagttttctttctttcgaattcaattcttgggctcctaac 13818796  T
Q  337 aat 339  Q
    |||    
T  13818795 aat 13818793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 156 - 208
Target Start/End: Original strand, 40077026 - 40077078
Alignment:
Q  156 agttagttattcggattggttagagagtatgtgtataaataagagaacacaaa 208  Q
    |||| |||||| ||||| ||||||||||||||| ||||||| |||||||||||    
T  40077026 agtttgttatttggattagttagagagtatgtgcataaataggagaacacaaa 40077078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 173 - 208
Target Start/End: Complemental strand, 50845754 - 50845719
Alignment:
Q  173 ggttagagagtatgtgtataaataagagaacacaaa 208  Q
    ||||||||||||||||||||||||||| ||||||||    
T  50845754 ggttagagagtatgtgtataaataagaaaacacaaa 50845719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 91 - 144
Target Start/End: Original strand, 46395985 - 46396042
Alignment:
Q  91 tgttgggatatagaataatggc----taattagagtagttaatctagttaagagttgt 144  Q
    |||| |||||||||||||||||    |||||||| |||||||| ||||||||||||||    
T  46395985 tgttaggatatagaataatggctaattaattagaatagttaatgtagttaagagttgt 46396042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0493 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: scaffold0493
Description:

Target: scaffold0493; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 225 - 292
Target Start/End: Complemental strand, 4234 - 4167
Alignment:
Q  225 atcttttgaatattgtaaaggggaaacccttggaggagagattatctcccattctttcctatttctta 292  Q
    |||||||||||||||| || |||||||||||| |||||||||| || || ||||| || |||||||||    
T  4234 atcttttgaatattgtgaatgggaaacccttgaaggagagattctcccctattctatcatatttctta 4167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000005; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 91 - 150
Target Start/End: Original strand, 779494 - 779553
Alignment:
Q  91 tgttgggatatagaataatggctaattagagtagttaatctagttaagagttgttatagt 150  Q
    |||| |||||| ||||||||||||| ||||||||||||| |||||||||| || ||||||    
T  779494 tgttaggatatggaataatggctaaatagagtagttaatgtagttaagagctgctatagt 779553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 131 - 205
Target Start/End: Complemental strand, 10525454 - 10525381
Alignment:
Q  131 tagttaagagttgttatagtcagtcagttagttattcggattggttagagagtatgtgtataaataagagaacac 205  Q
    |||||| ||||||||| ||  ||| |||| ||| || ||||| |||||||||| |||||||||||||||||||||    
T  10525454 tagttatgagttgttagaga-agttagtttgttttttggattagttagagagtgtgtgtataaataagagaacac 10525381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 235 - 303
Target Start/End: Complemental strand, 10525324 - 10525257
Alignment:
Q  235 tattgtaaaggggaaacccttggaggagagattatctcccattctttcctatttcttagtaaaagtgtt 303  Q
    |||||| ||||||||||||||| |||||||||| ||||  ||||| ||| |||||||| ||||| ||||    
T  10525324 tattgtgaaggggaaacccttg-aggagagattttctcgtattctatccaatttcttaataaaattgtt 10525257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 235 - 281
Target Start/End: Complemental strand, 45249274 - 45249228
Alignment:
Q  235 tattgtaaaggggaaacccttggaggagagattatctcccattcttt 281  Q
    |||||| |||||||||||||||||||| ||||| |||||||||||||    
T  45249274 tattgtgaaggggaaacccttggaggatagattttctcccattcttt 45249228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 156 - 203
Target Start/End: Complemental strand, 8530423 - 8530377
Alignment:
Q  156 agttagttattcggattggttagagagtatgtgtataaataagagaac 203  Q
    ||||||||||| ||||| ||||||||| ||||||||||||||||||||    
T  8530423 agttagttatttggattagttagagag-atgtgtataaataagagaac 8530377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 235 - 322
Target Start/End: Complemental strand, 44208595 - 44208508
Alignment:
Q  235 tattgtaaaggggaaacccttggaggagagattatctcccattctttcctatttcttagtaaaagtgttctttctattccattcaatt 322  Q
    |||||| |||||||||| ||||||||| ||||| ||||  ||||| || | |||||||   ||||| ||||||||||| |||||||||    
T  44208595 tattgtgaaggggaaactcttggaggaaagattctctcttattctatcgtgtttcttaaataaagtattctttctatttcattcaatt 44208508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 235 - 337
Target Start/End: Original strand, 29465695 - 29465797
Alignment:
Q  235 tattgtaaaggggaaacccttggaggagagattatctcccattctttcctatttcttagtaaaagtgttctttctattccattcaattgttgggttctta 334  Q
    |||||| ||||||||||  |||||||||||||| |||     ||| || |||||||||   ||||||||||||||||||||||||||| |||| ||| ||    
T  29465695 tattgtgaaggggaaacggttggaggagagattctcttttcgtctatcatatttcttaaataaagtgttctttctattccattcaattcttggattccta 29465794  T
Q  335 aca 337  Q
    |||    
T  29465795 aca 29465797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 242 - 338
Target Start/End: Original strand, 15047156 - 15047253
Alignment:
Q  242 aaggggaaacccttggaggagaga-ttatctcccattctttcctatttcttagtaaaagtgttctttctattccattcaattgttgggttcttaacaa 338  Q
    |||||||||||||||||||||||| || ||||| ||||||| ||| || | | |||||||||||||||| |   || ||||| |||||||| ||||||    
T  15047156 aaggggaaacccttggaggagagatttctctcctattcttttctacttatcaataaaagtgttctttctttggaatccaattcttgggttcctaacaa 15047253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 234 - 279
Target Start/End: Original strand, 29075674 - 29075719
Alignment:
Q  234 atattgtaaaggggaaacccttggaggagagattatctcccattct 279  Q
    ||||||| ||||||||| |||||||||||||||||||||| |||||    
T  29075674 atattgtgaaggggaaaaccttggaggagagattatctccaattct 29075719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 83 - 128
Target Start/End: Complemental strand, 37910387 - 37910342
Alignment:
Q  83 ttgatttgtgttgggatatagaataatggctaattagagtagttaa 128  Q
    |||| |||||||||||| |||||||||| |||||||||||||||||    
T  37910387 ttgagttgtgttgggatgtagaataatgactaattagagtagttaa 37910342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 113 - 152
Target Start/End: Original strand, 19176059 - 19176098
Alignment:
Q  113 taattagagtagttaatctagttaagagttgttatagtca 152  Q
    ||||||||||||||||  ||||||||||||||||||||||    
T  19176059 taattagagtagttaaagtagttaagagttgttatagtca 19176098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 87 - 145
Target Start/End: Original strand, 22771161 - 22771219
Alignment:
Q  87 tttgtgttgggatatagaataatggctaattagagtagttaatctagttaagagttgtt 145  Q
    |||||||| ||||||| |||||||||||| ||||||||||||  ||| || ||||||||    
T  22771161 tttgtgttaggatataaaataatggctaactagagtagttaaattagctatgagttgtt 22771219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 235 - 305
Target Start/End: Original strand, 31673991 - 31674063
Alignment:
Q  235 tattgtaaaggggaaacccttggaggagagattatctcccat--tctttcctatttcttagtaaaagtgttct 305  Q
    |||||| |||||||| ||||||||||||||||| ||||| ||  | | |||||||| ||| ||||||||||||    
T  31673991 tattgtgaaggggaaccccttggaggagagattctctcctattatatatcctattttttaataaaagtgttct 31674063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 269 - 312
Target Start/End: Original strand, 21524218 - 21524262
Alignment:
Q  269 tctcccattctttccta-tttcttagtaaaagtgttctttctatt 312  Q
    ||||||||||||||||| ||||||| |||| ||||||||||||||    
T  21524218 tctcccattctttcctattttcttaataaatgtgttctttctatt 21524262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 269 - 312
Target Start/End: Original strand, 21534778 - 21534822
Alignment:
Q  269 tctcccattctttccta-tttcttagtaaaagtgttctttctatt 312  Q
    ||||||||||||||||| ||||||| |||| ||||||||||||||    
T  21534778 tctcccattctttcctattttcttaataaatgtgttctttctatt 21534822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 156 - 208
Target Start/End: Complemental strand, 37910309 - 37910257
Alignment:
Q  156 agttagttattcggattggttagagagtatgtgtataaataagagaacacaaa 208  Q
    ||||||||||| ||||| |||| |||||||||| ||||||| ||||| |||||    
T  37910309 agttagttatttggattagttaaagagtatgtgcataaataggagaatacaaa 37910257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University