View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6431_low_20 (Length: 243)
Name: NF6431_low_20
Description: NF6431
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6431_low_20 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 50108902 - 50108674
Alignment:
| Q |
1 |
tttgtgaggaactaaatatatagataaaataaaatatttttacgaatattatcttgaaatttttgttgttgataaagtagagactgaaatttttgggata |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50108902 |
tttgtgaggaactaaatatatagataaaataaaatatttttacgaatattatcttgaaatttttgttgttgataaagtagagactgaaatttttgggata |
50108803 |
T |
|
| Q |
101 |
gctaattatatatattatgagagtggctaaacacaataatacactaacttatnnnnnnnnnnctaaataaattaagataaaatagaatcgccaaggccac |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50108802 |
gctaattatatatattatgagagtggctaaacacaataatacactaacttat-caaaaaaaactaaataaattaagataaaatagaatcgccaaggccac |
50108704 |
T |
|
| Q |
201 |
cctaagttaacattaccctccacccctgat |
230 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
50108703 |
cctaagttaacattaccctccacccctgat |
50108674 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 111 - 152
Target Start/End: Original strand, 4430064 - 4430105
Alignment:
| Q |
111 |
tatattatgagagtggctaaacacaataatacactaacttat |
152 |
Q |
| |
|
|||||||| ||||||||||||||||| ||||||||||||||| |
|
|
| T |
4430064 |
tatattattagagtggctaaacacaaaaatacactaacttat |
4430105 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 78
Target Start/End: Original strand, 42172134 - 42172197
Alignment:
| Q |
14 |
aaatatatagataaaataaaatatttttacgaatattatcttga-aatttttgttgttgataaagt |
78 |
Q |
| |
|
||||||||||| ||||||||||| |||||||| |||||||||| |||||| |||||||| ||||| |
|
|
| T |
42172134 |
aaatatatagaaaaaataaaatacttttacga--attatcttgacaattttcgttgttgacaaagt |
42172197 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University