View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6431_low_3 (Length: 518)

Name: NF6431_low_3
Description: NF6431
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6431_low_3
NF6431_low_3
[»] chr8 (30 HSPs)
chr8 (106-516)||(42792115-42792519)
chr8 (106-396)||(42805667-42805953)
chr8 (15-99)||(2547098-2547182)
chr8 (15-99)||(29705464-29705548)
chr8 (15-99)||(30912476-30912560)
chr8 (15-99)||(36743397-36743481)
chr8 (15-99)||(42197349-42197433)
chr8 (15-101)||(20148862-20148948)
chr8 (15-99)||(2165877-2165961)
chr8 (15-99)||(9241654-9241738)
chr8 (15-99)||(11582868-11582952)
chr8 (15-99)||(45397418-45397501)
chr8 (15-101)||(29800862-29800948)
chr8 (15-108)||(31384766-31384859)
chr8 (15-99)||(30660656-30660740)
chr8 (27-101)||(26125748-26125822)
chr8 (33-99)||(3743891-3743957)
chr8 (15-82)||(5755005-5755072)
chr8 (33-101)||(10678064-10678132)
chr8 (33-101)||(34304908-34304975)
chr8 (15-101)||(1375644-1375730)
chr8 (33-107)||(33629899-33629973)
chr8 (33-101)||(35181636-35181704)
chr8 (27-99)||(42295308-42295380)
chr8 (33-107)||(19386471-19386545)
chr8 (33-78)||(18066653-18066698)
chr8 (33-101)||(16358745-16358813)
chr8 (38-79)||(504153-504195)
chr8 (38-79)||(23122629-23122671)
chr8 (15-107)||(40528540-40528632)
[»] chr3 (32 HSPs)
chr3 (15-108)||(40808967-40809060)
chr3 (15-111)||(36150232-36150328)
chr3 (15-99)||(24688316-24688400)
chr3 (15-99)||(53581772-53581856)
chr3 (15-108)||(54237198-54237291)
chr3 (15-99)||(40480851-40480935)
chr3 (15-99)||(42394333-42394417)
chr3 (15-99)||(46941155-46941239)
chr3 (27-99)||(52629942-52630014)
chr3 (15-99)||(1078320-1078404)
chr3 (15-99)||(25413783-25413867)
chr3 (15-99)||(54246062-54246146)
chr3 (15-99)||(47190940-47191024)
chr3 (15-97)||(42100790-42100872)
chr3 (15-107)||(45126834-45126926)
chr3 (33-108)||(9434244-9434319)
chr3 (26-101)||(19148881-19148956)
chr3 (15-106)||(27748665-27748747)
chr3 (33-108)||(51757713-51757787)
chr3 (15-101)||(29556871-29556956)
chr3 (43-98)||(54429180-54429235)
chr3 (33-111)||(4190167-4190245)
chr3 (15-99)||(53273607-53273682)
chr3 (33-99)||(10457806-10457872)
chr3 (33-101)||(34791949-34792016)
chr3 (17-79)||(17470431-17470494)
chr3 (17-79)||(26141543-26141606)
chr3 (17-79)||(49607440-49607503)
chr3 (15-54)||(51249410-51249449)
chr3 (38-79)||(54868927-54868969)
chr3 (41-79)||(55191432-55191470)
chr3 (15-80)||(11064655-11064720)
[»] chr7 (29 HSPs)
chr7 (15-99)||(16180271-16180355)
chr7 (15-101)||(5015497-5015583)
chr7 (15-107)||(26898308-26898400)
chr7 (15-99)||(32029731-32029815)
chr7 (15-101)||(41861778-41861864)
chr7 (15-101)||(44326280-44326366)
chr7 (15-108)||(43343529-43343622)
chr7 (15-99)||(24000926-24001010)
chr7 (15-99)||(42538345-42538429)
chr7 (15-99)||(44416848-44416932)
chr7 (15-99)||(5810838-5810922)
chr7 (15-99)||(42972954-42973038)
chr7 (15-99)||(27393174-27393258)
chr7 (15-87)||(38160505-38160577)
chr7 (15-101)||(45326122-45326208)
chr7 (33-101)||(40237039-40237107)
chr7 (15-101)||(4638111-4638197)
chr7 (15-99)||(9216403-9216487)
chr7 (15-107)||(43317545-43317637)
chr7 (33-101)||(31408545-31408613)
chr7 (27-99)||(35069835-35069907)
chr7 (15-101)||(10573851-10573937)
chr7 (24-101)||(47279636-47279713)
chr7 (33-101)||(27535143-27535211)
chr7 (15-80)||(5194164-5194229)
chr7 (33-101)||(31513407-31513475)
chr7 (33-101)||(33384991-33385059)
chr7 (17-79)||(35522902-35522965)
chr7 (38-79)||(19329868-19329910)
[»] chr6 (20 HSPs)
chr6 (15-99)||(7367651-7367735)
chr6 (15-106)||(7292849-7292940)
chr6 (15-105)||(26669917-26670007)
chr6 (15-99)||(21280031-21280115)
chr6 (15-101)||(3213502-3213588)
chr6 (15-99)||(9698247-9698331)
chr6 (15-111)||(13743123-13743219)
chr6 (15-111)||(13748623-13748719)
chr6 (15-99)||(30736084-30736168)
chr6 (15-101)||(21293589-21293675)
chr6 (15-99)||(24203901-24203985)
chr6 (15-99)||(7273249-7273333)
chr6 (22-99)||(30014452-30014529)
chr6 (15-99)||(26466901-26466985)
chr6 (33-101)||(33242523-33242591)
chr6 (33-101)||(27441662-27441730)
chr6 (33-101)||(33254034-33254102)
chr6 (33-81)||(31109154-31109202)
chr6 (38-79)||(22880690-22880732)
chr6 (38-78)||(29857854-29857895)
[»] chr2 (28 HSPs)
chr2 (15-99)||(30838734-30838818)
chr2 (15-99)||(4764640-4764724)
chr2 (15-99)||(42849773-42849857)
chr2 (15-99)||(43335677-43335761)
chr2 (15-99)||(19047259-19047343)
chr2 (15-92)||(1750516-1750593)
chr2 (32-109)||(16096867-16096944)
chr2 (15-96)||(43490318-43490399)
chr2 (15-105)||(12302161-12302251)
chr2 (33-101)||(11825566-11825634)
chr2 (33-101)||(34895653-34895721)
chr2 (33-108)||(43114677-43114752)
chr2 (33-107)||(966740-966814)
chr2 (33-101)||(6518406-6518474)
chr2 (33-101)||(18491825-18491893)
chr2 (23-99)||(34817690-34817766)
chr2 (33-101)||(41281886-41281954)
chr2 (15-99)||(42026871-42026955)
chr2 (36-99)||(39149208-39149270)
chr2 (41-106)||(12415367-12415432)
chr2 (41-106)||(12427427-12427492)
chr2 (33-106)||(16804088-16804161)
chr2 (33-106)||(16843370-16843443)
chr2 (33-108)||(4299325-4299400)
chr2 (33-99)||(12531577-12531643)
chr2 (15-72)||(13780676-13780733)
chr2 (17-79)||(40613913-40613976)
chr2 (38-79)||(40701504-40701546)
[»] chr5 (16 HSPs)
chr5 (15-106)||(41334570-41334661)
chr5 (15-99)||(25914910-25914994)
chr5 (15-99)||(2614563-2614647)
chr5 (15-99)||(18034084-18034168)
chr5 (15-99)||(33801571-33801655)
chr5 (15-101)||(5257097-5257183)
chr5 (15-99)||(7617235-7617319)
chr5 (15-80)||(22512407-22512472)
chr5 (33-106)||(30622626-30622699)
chr5 (33-101)||(32473306-32473374)
chr5 (15-99)||(38470681-38470765)
chr5 (15-110)||(39122259-39122354)
chr5 (33-99)||(17208194-17208260)
chr5 (36-79)||(6679724-6679768)
chr5 (17-79)||(35785225-35785288)
chr5 (36-79)||(28177801-28177845)
[»] chr4 (41 HSPs)
chr4 (15-99)||(28982736-28982820)
chr4 (15-109)||(35017834-35017928)
chr4 (15-99)||(27550411-27550495)
chr4 (15-99)||(33703243-33703327)
chr4 (15-99)||(1771180-1771264)
chr4 (15-99)||(23036082-23036166)
chr4 (15-99)||(51512179-51512263)
chr4 (15-112)||(43514587-43514684)
chr4 (15-99)||(43735844-43735928)
chr4 (15-101)||(27893754-27893840)
chr4 (15-99)||(25051795-25051879)
chr4 (15-101)||(55966258-55966344)
chr4 (23-107)||(45490219-45490303)
chr4 (33-99)||(12497076-12497142)
chr4 (15-101)||(27864666-27864752)
chr4 (33-107)||(55272282-55272356)
chr4 (33-106)||(712080-712153)
chr4 (33-101)||(19880074-19880142)
chr4 (15-99)||(23204692-23204776)
chr4 (33-101)||(31681022-31681090)
chr4 (15-99)||(43949715-43949799)
chr4 (15-115)||(48463348-48463448)
chr4 (15-101)||(56215810-56215896)
chr4 (33-101)||(35037125-35037192)
chr4 (15-100)||(41848073-41848158)
chr4 (33-101)||(17619064-17619132)
chr4 (33-101)||(48435491-48435559)
chr4 (29-99)||(21687122-21687192)
chr4 (37-87)||(39631225-39631275)
chr4 (27-99)||(27316626-27316699)
chr4 (33-101)||(46827618-46827686)
chr4 (15-78)||(41327478-41327541)
chr4 (15-74)||(41878508-41878567)
chr4 (15-101)||(28988575-28988660)
chr4 (48-101)||(32728492-32728545)
chr4 (57-101)||(960755-960799)
chr4 (33-81)||(960802-960850)
chr4 (33-101)||(3756164-3756232)
chr4 (33-93)||(46412389-46412449)
chr4 (33-82)||(38851633-38851682)
chr4 (36-79)||(50526201-50526245)
[»] scaffold0119 (1 HSPs)
scaffold0119 (15-105)||(787-877)
[»] chr1 (29 HSPs)
chr1 (15-108)||(48498867-48498960)
chr1 (15-99)||(5489878-5489962)
chr1 (15-99)||(50448174-50448258)
chr1 (15-99)||(750219-750303)
chr1 (15-99)||(7447927-7448011)
chr1 (15-99)||(24769413-24769497)
chr1 (15-99)||(43571000-43571084)
chr1 (15-101)||(23989435-23989521)
chr1 (15-99)||(4401430-4401514)
chr1 (15-101)||(2497474-2497560)
chr1 (15-101)||(37814880-37814966)
chr1 (33-101)||(35003414-35003482)
chr1 (33-101)||(44112797-44112865)
chr1 (33-101)||(45705945-45706013)
chr1 (33-101)||(48119748-48119816)
chr1 (33-107)||(45639638-45639712)
chr1 (33-106)||(35000020-35000093)
chr1 (33-115)||(38113093-38113175)
chr1 (36-101)||(45427657-45427722)
chr1 (15-99)||(4888145-4888228)
chr1 (33-101)||(26585582-26585650)
chr1 (33-101)||(41065271-41065339)
chr1 (33-85)||(46168503-46168555)
chr1 (38-79)||(27564767-27564809)
chr1 (23-68)||(26440772-26440817)
chr1 (23-79)||(37926455-37926512)
chr1 (36-79)||(32813273-32813317)
chr1 (36-79)||(37649224-37649268)
chr1 (33-101)||(38336038-38336106)
[»] scaffold0187 (2 HSPs)
scaffold0187 (15-99)||(14103-14186)
scaffold0187 (15-99)||(24431-24514)
[»] scaffold0038 (1 HSPs)
scaffold0038 (15-99)||(112757-112841)
[»] scaffold0385 (1 HSPs)
scaffold0385 (20-99)||(11358-11437)
[»] scaffold0157 (1 HSPs)
scaffold0157 (33-99)||(23335-23401)
[»] scaffold0003 (1 HSPs)
scaffold0003 (33-101)||(45631-45699)
[»] scaffold0100 (1 HSPs)
scaffold0100 (48-99)||(35370-35421)
[»] scaffold0237 (1 HSPs)
scaffold0237 (38-78)||(4056-4097)


Alignment Details
Target: chr8 (Bit Score: 384; Significance: 0; HSPs: 30)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 106 - 516
Target Start/End: Original strand, 42792115 - 42792519
Alignment:
Q  106 attaaattaaataacatatggaacataaattcattttaaatacatttccctttatatttatatggttgatgttgttcaatcaaataaggtcaccatcaag 205  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||      ||||||||||||||||||||||||||||||||||||||||    
T  42792115 attaaattaaacaacatatggaacataaattcattttaaatacatttcccttta------tatggttgatgttgttcaatcaaataaggtcaccatcaag 42792208  T
Q  206 cttcaagatactggcccttcacttttaactaagttgacactcttagctgttaacaataattgttatgaaaagatcccatattgcacgtactcgttgattt 305  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42792209 cttcaagatactggcccttcacttttaactaagttgacactcttagctgttaacaataattgttatgaaaagatcccatattgcacgtactcgttgattt 42792308  T
Q  306 tctatactttcaacatagataacgaacgtactgtgtgtcggagaagaccccaaatgaagcagtctcgtaaacttccttcatctacaatagactactagtc 405  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42792309 tctatactttcaacatagataacgaacgtactgtgtgtcggagaagaccccaaatgaagcagtctcgtaaacttccttcatctacaatagactactagtc 42792408  T
Q  406 attttcacatcttattaaaatctcaaaccaatatttaatatattcagatttcagatgaagacagacacaagttcccatttgctatctacatcttcttctt 505  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42792409 attttcacatcttattaaaatctcaaaccaatatttaatatattcagatttcagatgaagacagacacaagttcccatttgctatctacatcttcttctt 42792508  T
Q  506 aatttcttctc 516  Q
    |||||||||||    
T  42792509 aatttcttctc 42792519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 106 - 396
Target Start/End: Complemental strand, 42805953 - 42805667
Alignment:
Q  106 attaaattaaataacatatggaacataaattcattttaaatacatttccctttatatttatatggttgatgttgttcaatcaaataaggtcaccatcaag 205  Q
    ||||||| ||| |||||||||||||| |||| |||| |||||||||||| |||   | ||  | |||  |||||||||||||||||||||||||||||||    
T  42805953 attaaatgaaacaacatatggaacatgaatttatttaaaatacatttcctttt---tctagttagttagtgttgttcaatcaaataaggtcaccatcaag 42805857  T
Q  206 cttcaagatactggcccttcacttttaactaagttgacactcttagctgttaacaataattgttatgaaaaga---tcccatattgcacgtactcgttga 302  Q
      ||| |||  |||||||||||||||||    | |||||| |||||||||||  || |||| | | ||||| |   |  |||||||||||||||| ||||    
T  42805856 tgtcatgatcttggcccttcacttttaa----gctgacacccttagctgttactaacaattatgaagaaaaaaaaatggcatattgcacgtactcattga 42805761  T
Q  303 ttttctatactttcaacatagataacgaacgtactgtgtgtcggagaagaccccaaatgaagcagtctcgtaaacttccttcatctacaataga 396  Q
    ||||||| |||| ||||| ||| ||||||||||||  || ||||||||| |||||||||||||||||  || | ||||||||||||||||||||    
T  42805760 ttttctagacttccaacacagaaaacgaacgtacttggtatcggagaaggccccaaatgaagcagtcatgtgatcttccttcatctacaataga 42805667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 15 - 99
Target Start/End: Original strand, 2547098 - 2547182
Alignment:
Q  15 atttgtgtgggatccaggttgccacgtgtcagaattttgtgtgggtgtaaaaggtgtattgccacatggggtggtacatgtatca 99  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||    
T  2547098 atttgtgtgggatccaagttgccacgtgtcagaattttgtgtgggtgtaaagggtgtattgccacatagggtggtacatgtatca 2547182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 15 - 99
Target Start/End: Original strand, 29705464 - 29705548
Alignment:
Q  15 atttgtgtgggatccaggttgccacgtgtcagaattttgtgtgggtgtaaaaggtgtattgccacatggggtggtacatgtatca 99  Q
    ||||||| ||| |||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  29705464 atttgtgcggggtccaagttgccacgtgtcagaattttgtgtgggtgtaaagggtgtattgccacatggggtggtacatgtatca 29705548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 15 - 99
Target Start/End: Complemental strand, 30912560 - 30912476
Alignment:
Q  15 atttgtgtgggatccaggttgccacgtgtcagaattttgtgtgggtgtaaaaggtgtattgccacatggggtggtacatgtatca 99  Q
    ||||||||||| || ||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||    
T  30912560 atttgtgtggggtctaggttgccacgtgtcagaattttgtgtgggtgtaaagagtgtattgccacatggggtggtacatgtatca 30912476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 15 - 99
Target Start/End: Complemental strand, 36743481 - 36743397
Alignment:
Q  15 atttgtgtgggatccaggttgccacgtgtcagaattttgtgtgggtgtaaaaggtgtattgccacatggggtggtacatgtatca 99  Q
    ||||||||||| ||||| |||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||    
T  36743481 atttgtgtggggtccagattgccacgtgtcagaattttgtatgggtgtaaatggtgtattgccacatggggtggtacatgtatca 36743397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 15 - 99
Target Start/End: Complemental strand, 42197433 - 42197349
Alignment:
Q  15 atttgtgtgggatccaggttgccacgtgtcagaattttgtgtgggtgtaaaaggtgtattgccacatggggtggtacatgtatca 99  Q
    ||||||||||| ||||| ||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  42197433 atttgtgtggggtccagattgccacgtgtcaaaattttgtgtgggtgtaaagggtgtattgccacatggggtggtacatgtatca 42197349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 15 - 101
Target Start/End: Original strand, 20148862 - 20148948
Alignment:
Q  15 atttgtgtgggatccaggttgccacgtgtcagaattttgtgtgggtgtaaaaggtgtattgccacatggggtggtacatgtatcacc 101  Q
    |||| |||||||||||| |||||||||||||||||||| |||||||||||| ||||||||||||||||| |||||||||||||||||    
T  20148862 atttatgtgggatccagattgccacgtgtcagaattttatgtgggtgtaaagggtgtattgccacatggtgtggtacatgtatcacc 20148948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 15 - 99
Target Start/End: Complemental strand, 2165961 - 2165877
Alignment:
Q  15 atttgtgtgggatccaggttgccacgtgtcagaattttgtgtgggtgtaaaaggtgtattgccacatggggtggtacatgtatca 99  Q
    ||||||||||| | ||||||||||||||||||||||||||||||||||||| ||||||||| |||||||| ||||||||||||||    
T  2165961 atttgtgtggggttcaggttgccacgtgtcagaattttgtgtgggtgtaaagggtgtattgtcacatgggatggtacatgtatca 2165877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 15 - 99
Target Start/End: Original strand, 9241654 - 9241738
Alignment:
Q  15 atttgtgtgggatccaggttgccacgtgtcagaattttgtgtgggtgtaaaaggtgtattgccacatggggtggtacatgtatca 99  Q
    |||| |||||| ||||||||||||||||||||||||||||||||||| ||| ||||| |||||||||||||||||||||||||||    
T  9241654 atttatgtggggtccaggttgccacgtgtcagaattttgtgtgggtgcaaagggtgtgttgccacatggggtggtacatgtatca 9241738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 15 - 99
Target Start/End: Original strand, 11582868 - 11582952
Alignment:
Q  15 atttgtgtgggatccaggttgccacgtgtcagaattttgtgtgggtgtaaaaggtgtattgccacatggggtggtacatgtatca 99  Q
    ||||||||||| ||||| |||||||||||||||||||||| |||||||||| |||||||||||||||| ||||||||||||||||    
T  11582868 atttgtgtggggtccagattgccacgtgtcagaattttgtatgggtgtaaagggtgtattgccacatgaggtggtacatgtatca 11582952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 15 - 99
Target Start/End: Original strand, 45397418 - 45397501
Alignment:
Q  15 atttgtgtgggatccaggttgccacgtgtcagaattttgtgtgggtgtaaaaggtgtattgccacatggggtggtacatgtatca 99  Q
    ||||||||||| ||||| ||||||||||||||||||||||||||||||||| ||||| ||||||||| |||||||||||||||||    
T  45397418 atttgtgtgggctccagattgccacgtgtcagaattttgtgtgggtgtaaagggtgtgttgccacat-gggtggtacatgtatca 45397501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 15 - 101
Target Start/End: Complemental strand, 29800948 - 29800862
Alignment:
Q  15 atttgtgtgggatccaggttgccacgtgtcagaattttgtgtgggtgtaaaaggtgtattgccacatggggtggtacatgtatcacc 101  Q
    |||| |||||| || || ||||||| |||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||    
T  29800948 atttatgtggggtcaagattgccacatgtcagaattttatgtgggtgtaaagggtgtattgccacatggggtggtacatgtatcacc 29800862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 15 - 108
Target Start/End: Original strand, 31384766 - 31384859
Alignment:
Q  15 atttgtgtgggatccaggttgccacgtgtcagaattttgtgtgggtgtaaaaggtgtattgccacatggggtggtacatgtatcaccgctcatt 108  Q
    ||||||||||| |||||||||| ||||||||||||||| ||||| |||||| ||| ||||||||||||||||||||||| ||||| | ||||||    
T  31384766 atttgtgtggggtccaggttgctacgtgtcagaattttatgtggatgtaaagggtatattgccacatggggtggtacatatatcatcactcatt 31384859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 15 - 99
Target Start/End: Complemental strand, 30660740 - 30660656
Alignment:
Q  15 atttgtgtgggatccaggttgccacgtgtcagaattttgtgtgggtgtaaaaggtgtattgccacatggggtggtacatgtatca 99  Q
    ||||||||||| |||||||||||||||||||||||||| ||||| |||||| ||||||||||||||| || || |||||||||||    
T  30660740 atttgtgtggggtccaggttgccacgtgtcagaattttatgtggatgtaaagggtgtattgccacataggatgatacatgtatca 30660656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 27 - 101
Target Start/End: Original strand, 26125748 - 26125822
Alignment:
Q  27 tccaggttgccacgtgtcagaattttgtgtgggtgtaaaaggtgtattgccacatggggtggtacatgtatcacc 101  Q
    ||||| |||||||||||||||||||| || ||||||||| ||||||||||||||||||||||||||| |||||||    
T  26125748 tccagattgccacgtgtcagaattttatgcgggtgtaaagggtgtattgccacatggggtggtacatatatcacc 26125822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 33 - 99
Target Start/End: Original strand, 3743891 - 3743957
Alignment:
Q  33 ttgccacgtgtcagaattttgtgtgggtgtaaaaggtgtattgccacatggggtggtacatgtatca 99  Q
    |||||||||||||||||||| |||||||||||| |||||||||| |||||||||||||||| |||||    
T  3743891 ttgccacgtgtcagaattttatgtgggtgtaaagggtgtattgctacatggggtggtacatatatca 3743957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 15 - 82
Target Start/End: Original strand, 5755005 - 5755072
Alignment:
Q  15 atttgtgtgggatccaggttgccacgtgtcagaattttgtgtgggtgtaaaaggtgtattgccacatg 82  Q
    |||| ||||||||||| |||||||||||| ||||||||||||||||||||| ||||||||||| ||||    
T  5755005 atttatgtgggatccaagttgccacgtgttagaattttgtgtgggtgtaaagggtgtattgccccatg 5755072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 33 - 101
Target Start/End: Complemental strand, 10678132 - 10678064
Alignment:
Q  33 ttgccacgtgtcagaattttgtgtgggtgtaaaaggtgtattgccacatggggtggtacatgtatcacc 101  Q
    ||||||| |||||| ||||||||||||||||| || |||||||||||||||||  ||||||||||||||    
T  10678132 ttgccacatgtcaggattttgtgtgggtgtaagagatgtattgccacatgggggtgtacatgtatcacc 10678064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 33 - 101
Target Start/End: Original strand, 34304908 - 34304975
Alignment:
Q  33 ttgccacgtgtcagaattttgtgtgggtgtaaaaggtgtattgccacatggggtggtacatgtatcacc 101  Q
    ||||||| |||||| ||||||| ||||||||| ||||||||||||||||||||| ||||||||||||||    
T  34304908 ttgccacatgtcaggattttgtttgggtgtaagaggtgtattgccacatggggt-gtacatgtatcacc 34304975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 15 - 101
Target Start/End: Original strand, 1375644 - 1375730
Alignment:
Q  15 atttgtgtgggatccaggttgccacgtgtcagaattttgtgtgggtgtaaaaggtgtattgccacatggggtggtacatgtatcacc 101  Q
    ||||||||||  | ||| ||||||||||| ||||| |||||||||||||||   ||||||| ||||| |||||||||||||||||||    
T  1375644 atttgtgtggagttcagattgccacgtgttagaatcttgtgtgggtgtaaagaatgtattgtcacatagggtggtacatgtatcacc 1375730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 33 - 107
Target Start/End: Complemental strand, 33629973 - 33629899
Alignment:
Q  33 ttgccacgtgtcagaattttgtgtgggtgtaaaaggtgtattgccacatggggtggtacatgtatcaccgctcat 107  Q
    ||||||| ||||| |||||||||| ||||||| ||||||||||||||||||||  |||||| ||||||| |||||    
T  33629973 ttgccacatgtcaaaattttgtgtaggtgtaagaggtgtattgccacatgggggtgtacatatatcaccactcat 33629899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 33 - 101
Target Start/End: Original strand, 35181636 - 35181704
Alignment:
Q  33 ttgccacgtgtcagaattttgtgtgggtgtaaaaggtgtattgccacatggggtggtacatgtatcacc 101  Q
    ||||||| |||||| ||||||||||||||||| |||||||||||||||||  |  ||||||||||||||    
T  35181636 ttgccacatgtcaggattttgtgtgggtgtaagaggtgtattgccacatgaaggtgtacatgtatcacc 35181704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 27 - 99
Target Start/End: Original strand, 42295308 - 42295380
Alignment:
Q  27 tccaggttgccacgtgtcagaattttgtgtgggtgtaaaaggtgtattgccacatggggtggtacatgtatca 99  Q
    |||| |||||||| |||||||||||||||||| |||||| ||| ||||||||||| || |||||||| |||||    
T  42295308 tccaagttgccacatgtcagaattttgtgtggatgtaaagggtatattgccacataggatggtacatttatca 42295380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 33 - 107
Target Start/End: Complemental strand, 19386545 - 19386471
Alignment:
Q  33 ttgccacgtgtcagaattttgtgtgggtgtaaaaggtgtattgccacatggggtggtacatgtatcaccgctcat 107  Q
    ||||||| |||||| ||||||||||||||||  ||||| ||| |||||||| |  |||||||||||||| |||||    
T  19386545 ttgccacatgtcaggattttgtgtgggtgtatgaggtgcattaccacatggagatgtacatgtatcaccactcat 19386471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 33 - 78
Target Start/End: Complemental strand, 18066698 - 18066653
Alignment:
Q  33 ttgccacgtgtcagaattttgtgtgggtgtaaaaggtgtattgcca 78  Q
    ||||||| |||||||||||| ||||||||||| |||||||||||||    
T  18066698 ttgccacatgtcagaattttatgtgggtgtaagaggtgtattgcca 18066653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 33 - 101
Target Start/End: Complemental strand, 16358813 - 16358745
Alignment:
Q  33 ttgccacgtgtcagaattttgtgtgggtgtaaaaggtgtattgccacatggggtggtacatgtatcacc 101  Q
    ||||||| |||||  ||||| ||||||| ||| ||||||||||||| ||||||  ||||||||||||||    
T  16358813 ttgccacatgtcatgattttatgtgggtataagaggtgtattgccatatgggggtgtacatgtatcacc 16358745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 38 - 79
Target Start/End: Original strand, 504153 - 504195
Alignment:
Q  38 acgtgtcagaattttgtgtgggtgt-aaaaggtgtattgccac 79  Q
    |||||||||| |||||||||||||| |||||||||||||||||    
T  504153 acgtgtcagatttttgtgtgggtgtcaaaaggtgtattgccac 504195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 38 - 79
Target Start/End: Original strand, 23122629 - 23122671
Alignment:
Q  38 acgtgtcagaattttgtgtgggtgt-aaaaggtgtattgccac 79  Q
    |||||||||| |||||||||||||| |||||||||||||||||    
T  23122629 acgtgtcagatttttgtgtgggtgtcaaaaggtgtattgccac 23122671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 15 - 107
Target Start/End: Complemental strand, 40528632 - 40528540
Alignment:
Q  15 atttgtgtgggatccaggttgccacgtgtcagaattttgtgtgggtgtaaaaggtgtattgccacatggggtggtacatgtatcaccgctcat 107  Q
    ||||||||||| | || |||| ||| ||||| |||||||||||| |||||| | | ||||| |||||| ||  | |||||||||||| |||||    
T  40528632 atttgtgtggggttcaagttgtcacatgtcataattttgtgtggatgtaaatgatatattgtcacatgagggtgcacatgtatcaccactcat 40528540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 78; Significance: 4e-36; HSPs: 32)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 15 - 108
Target Start/End: Original strand, 40808967 - 40809060
Alignment:
Q  15 atttgtgtgggatccaggttgccacgtgtcagaattttgtgtgggtgtaaaaggtgtattgccacatggggtggtacatgtatcaccgctcatt 108  Q
    ||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| | ||||||    
T  40808967 atttgtgtggggtccaggttgccacgtgtcagaattttgtgtggatgtaaaaggtgtattgccacatggggtggtacatgtatcatcactcatt 40809060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 15 - 111
Target Start/End: Original strand, 36150232 - 36150328
Alignment:
Q  15 atttgtgtgggatccaggttgccacgtgtcagaattttgtgtgggtgtaaaaggtgtattgccacatggggtggtacatgtatcaccgctcattaaa 111  Q
    ||||||||||  |||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||| ||| |||||    
T  36150232 atttgtgtggagtccaggttgccacgtgtcagaattttgtgtggatgtaaagggtgtattgccacatggggtggtacatgtatcaccactctttaaa 36150328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 15 - 99
Target Start/End: Complemental strand, 24688400 - 24688316
Alignment:
Q  15 atttgtgtgggatccaggttgccacgtgtcagaattttgtgtgggtgtaaaaggtgtattgccacatggggtggtacatgtatca 99  Q
    |||| |||||| ||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||    
T  24688400 atttatgtggggtccaggttgccacgtgtcagaattttgtgtgggggtaaatggtgtattgccacatggggtggtacatgtatca 24688316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 15 - 99
Target Start/End: Complemental strand, 53581856 - 53581772
Alignment:
Q  15 atttgtgtgggatccaggttgccacgtgtcagaattttgtgtgggtgtaaaaggtgtattgccacatggggtggtacatgtatca 99  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||| ||||||    
T  53581856 atttgtgtggggtccaggttgccacgtgtcagaattttgtgtgggtgtaaagggtgtattgccacatagggtggtacaggtatca 53581772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 15 - 108
Target Start/End: Original strand, 54237198 - 54237291
Alignment:
Q  15 atttgtgtgggatccaggttgccacgtgtcagaattttgtgtgggtgtaaaaggtgtattgccacatggggtggtacatgtatcaccgctcatt 108  Q
    ||||||||||| ||||| ||||||||||||||||| |||| |||||||||| ||||||||||||||||||||||||||||||||| | ||||||    
T  54237198 atttgtgtggggtccagattgccacgtgtcagaatattgtatgggtgtaaagggtgtattgccacatggggtggtacatgtatcatcactcatt 54237291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 15 - 99
Target Start/End: Original strand, 40480851 - 40480935
Alignment:
Q  15 atttgtgtgggatccaggttgccacgtgtcagaattttgtgtgggtgtaaaaggtgtattgccacatggggtggtacatgtatca 99  Q
    |||||||| || ||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||| |||||||||||    
T  40480851 atttgtgtagggtccaggttgccacgtgtcagaattttgtgtgggtgtaaagggtgtattgccgcatggggtgatacatgtatca 40480935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 15 - 99
Target Start/End: Complemental strand, 42394417 - 42394333
Alignment:
Q  15 atttgtgtgggatccaggttgccacgtgtcagaattttgtgtgggtgtaaaaggtgtattgccacatggggtggtacatgtatca 99  Q
    ||||||||||| ||||| ||||||||||||| |||||||| |||||||||| |||||||||||||||||||||||||||||||||    
T  42394417 atttgtgtggggtccagattgccacgtgtcaaaattttgtatgggtgtaaagggtgtattgccacatggggtggtacatgtatca 42394333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 15 - 99
Target Start/End: Original strand, 46941155 - 46941239
Alignment:
Q  15 atttgtgtgggatccaggttgccacgtgtcagaattttgtgtgggtgtaaaaggtgtattgccacatggggtggtacatgtatca 99  Q
    ||||||||||| |||| ||||||||||||||||||||| ||||||||||||  ||||||||||||||||||||||||||||||||    
T  46941155 atttgtgtggggtccaagttgccacgtgtcagaattttatgtgggtgtaaagagtgtattgccacatggggtggtacatgtatca 46941239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 27 - 99
Target Start/End: Original strand, 52629942 - 52630014
Alignment:
Q  27 tccaggttgccacgtgtcagaattttgtgtgggtgtaaaaggtgtattgccacatggggtggtacatgtatca 99  Q
    |||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  52629942 tccaggttgctacgtgtcagaattttgtgtgggtgtaaagggtgtattgccacatggggtggtacatgtatca 52630014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 15 - 99
Target Start/End: Original strand, 1078320 - 1078404
Alignment:
Q  15 atttgtgtgggatccaggttgccacgtgtcagaattttgtgtgggtgtaaaaggtgtattgccacatggggtggtacatgtatca 99  Q
    ||||||||||  | |||||||||||||||||||||||||||||| |||||| |||||||||||||||| ||||||||||||||||    
T  1078320 atttgtgtggagttcaggttgccacgtgtcagaattttgtgtggatgtaaagggtgtattgccacatgaggtggtacatgtatca 1078404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 15 - 99
Target Start/End: Original strand, 25413783 - 25413867
Alignment:
Q  15 atttgtgtgggatccaggttgccacgtgtcagaattttgtgtgggtgtaaaaggtgtattgccacatggggtggtacatgtatca 99  Q
    ||||||||||| |||||||| |||||||||||| ||||||||||||||||| ||||||||| || ||||||||||||||||||||    
T  25413783 atttgtgtggggtccaggttaccacgtgtcagagttttgtgtgggtgtaaagggtgtattgtcatatggggtggtacatgtatca 25413867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 15 - 99
Target Start/End: Complemental strand, 54246146 - 54246062
Alignment:
Q  15 atttgtgtgggatccaggttgccacgtgtcagaattttgtgtgggtgtaaaaggtgtattgccacatggggtggtacatgtatca 99  Q
    ||||||||||| ||||||||||||| |||||||||||| ||||||||||||   |||||||||||||||||||||||||||||||    
T  54246146 atttgtgtggggtccaggttgccacatgtcagaattttatgtgggtgtaaagaatgtattgccacatggggtggtacatgtatca 54246062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 15 - 99
Target Start/End: Complemental strand, 47191024 - 47190940
Alignment:
Q  15 atttgtgtgggatccaggttgccacgtgtcagaattttgtgtgggtgtaaaaggtgtattgccacatggggtggtacatgtatca 99  Q
    ||||||||||| |||| ||| |||| ||||||||||||||||||||||||| |||||||||||||||||  ||||||||||||||    
T  47191024 atttgtgtggggtccaagttaccacatgtcagaattttgtgtgggtgtaaagggtgtattgccacatggaatggtacatgtatca 47190940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 15 - 97
Target Start/End: Original strand, 42100790 - 42100872
Alignment:
Q  15 atttgtgtgggatccaggttgccacgtgtcagaattttgtgtgggtgtaaaaggtgtattgccacatggggtggtacatgtat 97  Q
    ||||||||||  | |||||||||||||||||||||||| |||||||||||| |||| ||||||||||| ||||||||||||||    
T  42100790 atttgtgtggagttcaggttgccacgtgtcagaattttatgtgggtgtaaagggtgcattgccacatgaggtggtacatgtat 42100872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 15 - 107
Target Start/End: Complemental strand, 45126926 - 45126834
Alignment:
Q  15 atttgtgtgggatccaggttgccacgtgtcagaattttgtgtgggtgtaaaaggtgtattgccacatggggtggtacatgtatcaccgctcat 107  Q
    |||| |||||| ||||| || |||| || ||||||||| |||||||||||| ||||||||||||||||| ||||||||||||||||| |||||    
T  45126926 atttatgtggggtccagattaccacatgccagaattttatgtgggtgtaaagggtgtattgccacatggagtggtacatgtatcaccactcat 45126834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 33 - 108
Target Start/End: Original strand, 9434244 - 9434319
Alignment:
Q  33 ttgccacgtgtcagaattttgtgtgggtgtaaaaggtgtattgccacatggggtggtacatgtatcaccgctcatt 108  Q
    ||||||| |||||||||||||||||||||||| |||||||||||||||||||   |||||||||||||| ||||||    
T  9434244 ttgccacatgtcagaattttgtgtgggtgtaagaggtgtattgccacatgggagtgtacatgtatcaccactcatt 9434319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 26 - 101
Target Start/End: Original strand, 19148881 - 19148956
Alignment:
Q  26 atccaggttgccacgtgtcagaattttgtgtgggtgtaaaaggtgtattgccacatggggtggtacatgtatcacc 101  Q
    |||||||||||||  ||||||||||||||||||||||||  |||||||||||||||||||  |||||||| |||||    
T  19148881 atccaggttgccatatgtcagaattttgtgtgggtgtaagtggtgtattgccacatgggggtgtacatgtgtcacc 19148956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 15 - 106
Target Start/End: Original strand, 27748665 - 27748747
Alignment:
Q  15 atttgtgtgggatccaggttgccacgtgtcagaattttgtgtgggtgtaaaaggtgtattgccacatggggtggtacatgtatcaccgctca 106  Q
    ||||||||||| ||||||||||||| ||||||||||||||||          ||||||||||||||||||||||||||||||||||| ||||    
T  27748665 atttgtgtggggtccaggttgccacatgtcagaattttgtgt---------cggtgtattgccacatggggtggtacatgtatcaccactca 27748747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 33 - 108
Target Start/End: Original strand, 51757713 - 51757787
Alignment:
Q  33 ttgccacgtgtcagaattttgtgtgggtgtaaaaggtgtattgccacatggggtggtacatgtatcaccgctcatt 108  Q
    ||||||| |||||| ||| ||||||||||||| |||| |||||||||||||||| |||||||||||||| ||||||    
T  51757713 ttgccacatgtcaggattgtgtgtgggtgtaagaggtatattgccacatggggt-gtacatgtatcaccactcatt 51757787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 15 - 101
Target Start/End: Complemental strand, 29556956 - 29556871
Alignment:
Q  15 atttgtgtgggatccaggttgccacgtgtcagaattttgtgtgggtgtaaaaggtgtattgccacatggggtggtacatgtatcacc 101  Q
    ||||||||||| | ||||||||||| ||||||| |||| | ||||||||||  |||||||||||||||  |||||||||||||||||    
T  29556956 atttgtgtggggttcaggttgccacatgtcaga-ttttatatgggtgtaaattgtgtattgccacatgtagtggtacatgtatcacc 29556871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 43 - 98
Target Start/End: Complemental strand, 54429235 - 54429180
Alignment:
Q  43 tcagaattttgtgtgggtgtaaaaggtgtattgccacatggggtggtacatgtatc 98  Q
    |||||||||||||||||||||| ||||||||||||| ||||||  |||||||||||    
T  54429235 tcagaattttgtgtgggtgtaagaggtgtattgccatatgggggtgtacatgtatc 54429180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 33 - 111
Target Start/End: Complemental strand, 4190245 - 4190167
Alignment:
Q  33 ttgccacgtgtcagaattttgtgtgggtgtaaaaggtgtattgccacatggggtggtacatgtatcaccgctcattaaa 111  Q
    ||||||| |||||| ||||||||||||||||| ||||||||||||||||  ||   ||||||||||||| ||| |||||    
T  4190245 ttgccacatgtcaggattttgtgtgggtgtaagaggtgtattgccacataagggtatacatgtatcaccactctttaaa 4190167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 15 - 99
Target Start/End: Complemental strand, 53273682 - 53273607
Alignment:
Q  15 atttgtgtgggatccaggttgccacgtgtcagaattttgtgtgggtgtaaaaggtgtattgccacatggggtggtacatgtatca 99  Q
    |||| ||||||||||||||| |||||| ||||||||||||||         ||||||||||||||||||| ||||||||||||||    
T  53273682 atttatgtgggatccaggttaccacgtatcagaattttgtgt---------aggtgtattgccacatgggatggtacatgtatca 53273607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 33 - 99
Target Start/End: Complemental strand, 10457872 - 10457806
Alignment:
Q  33 ttgccacgtgtcagaattttgtgtgggtgtaaaaggtgtattgccacatggggtggtacatgtatca 99  Q
    ||||||| |||||| ||||||||||| ||||| ||||||||||||||||| ||   |||||||||||    
T  10457872 ttgccacatgtcaggattttgtgtggatgtaagaggtgtattgccacatgagggtatacatgtatca 10457806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 33 - 101
Target Start/End: Original strand, 34791949 - 34792016
Alignment:
Q  33 ttgccacgtgtcagaattttgtgtgggtgtaaaaggtgtattgccacatggggtggtacatgtatcacc 101  Q
    ||||||| |||||| ||||||||||| ||||| ||||||||||||| ||||| | ||| ||||||||||    
T  34791949 ttgccacatgtcaggattttgtgtggatgtaagaggtgtattgccatatgggat-gtagatgtatcacc 34792016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 17 - 79
Target Start/End: Complemental strand, 17470494 - 17470431
Alignment:
Q  17 ttgtgtgggatccaggttgccacgtgtcagaattttgtgtgggtg-taaaaggtgtattgccac 79  Q
    ||||||||| |||| ||  | |||||||||| ||||||||||||| ||||||||||||||||||    
T  17470494 ttgtgtggggtccacgtgactacgtgtcagatttttgtgtgggtgttaaaaggtgtattgccac 17470431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 17 - 79
Target Start/End: Original strand, 26141543 - 26141606
Alignment:
Q  17 ttgtgtgggatccaggttgccacgtgtcagaattttgtgtgggtg-taaaaggtgtattgccac 79  Q
    ||||||||| |||| ||  |||||||||||| ||||||||||||| |||| |||||||||||||    
T  26141543 ttgtgtggggtccatgtgaccacgtgtcagatttttgtgtgggtgttaaagggtgtattgccac 26141606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 17 - 79
Target Start/End: Complemental strand, 49607503 - 49607440
Alignment:
Q  17 ttgtgtgggatccaggttgccacgtgtcagaattttgtgtgggtgt-aaaaggtgtattgccac 79  Q
    |||||||||||||| ||  | |||||||||| |||||||||||||| ||| |||||||||||||    
T  49607503 ttgtgtgggatccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccac 49607440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 15 - 54
Target Start/End: Original strand, 51249410 - 51249449
Alignment:
Q  15 atttgtgtgggatccaggttgccacgtgtcagaattttgt 54  Q
    ||||||||||||||||| ||||||| ||||||||||||||    
T  51249410 atttgtgtgggatccagattgccacatgtcagaattttgt 51249449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 38 - 79
Target Start/End: Original strand, 54868927 - 54868969
Alignment:
Q  38 acgtgtcagaattttgtgtgggtgt-aaaaggtgtattgccac 79  Q
    |||||||||| |||||||||||||| |||||||||||||||||    
T  54868927 acgtgtcagatttttgtgtgggtgtcaaaaggtgtattgccac 54868969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 41 - 79
Target Start/End: Complemental strand, 55191470 - 55191432
Alignment:
Q  41 tgtcagaattttgtgtgggtgtaaaaggtgtattgccac 79  Q
    ||||||||||||||||| |||||| ||||||||||||||    
T  55191470 tgtcagaattttgtgtgagtgtaagaggtgtattgccac 55191432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 15 - 80
Target Start/End: Complemental strand, 11064720 - 11064655
Alignment:
Q  15 atttgtgtgggatccaggttgccacgtgtcagaattttgtgtgggtgtaaaaggtgtattgccaca 80  Q
    ||||||||||| || || || |||| ||||| ||||||||||||||||||  ||||||||| ||||    
T  11064720 atttgtgtggggtctagattaccacatgtcaaaattttgtgtgggtgtaaggggtgtattgtcaca 11064655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 77; Significance: 2e-35; HSPs: 29)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 15 - 99
Target Start/End: Complemental strand, 16180355 - 16180271
Alignment:
Q  15 atttgtgtgggatccaggttgccacgtgtcagaattttgtgtgggtgtaaaaggtgtattgccacatggggtggtacatgtatca 99  Q
    ||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  16180355 atttgtgtggggtccaggttgccacgtgtcagaattttgtgtggatgtaaaaggtgtattgccacatggggtggtacatgtatca 16180271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 15 - 101
Target Start/End: Original strand, 5015497 - 5015583
Alignment:
Q  15 atttgtgtgggatccaggttgccacgtgtcagaattttgtgtgggtgtaaaaggtgtattgccacatggggtggtacatgtatcacc 101  Q
    ||||||||||| |||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  5015497 atttgtgtggggtccaagttgccacgtgtcagaattttgtgtgagtgtaaaaggtgtattgccacatggggtggtacatgtatcacc 5015583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 15 - 107
Target Start/End: Complemental strand, 26898400 - 26898308
Alignment:
Q  15 atttgtgtgggatccaggttgccacgtgtcagaattttgtgtgggtgtaaaaggtgtattgccacatggggtggtacatgtatcaccgctcat 107  Q
    ||||||||||| |||||||| ||||||||||||||||| |||||||||||||||||||||||||||| || |||||||||||||||| |||||    
T  26898400 atttgtgtggggtccaggttaccacgtgtcagaattttatgtgggtgtaaaaggtgtattgccacataggatggtacatgtatcaccactcat 26898308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 15 - 99
Target Start/End: Complemental strand, 32029815 - 32029731
Alignment:
Q  15 atttgtgtgggatccaggttgccacgtgtcagaattttgtgtgggtgtaaaaggtgtattgccacatggggtggtacatgtatca 99  Q
    |||| |||||| |||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  32029815 atttatgtggggtccaagttgccacgtgtcagaattttgtgtgggtgtaaagggtgtattgccacatggggtggtacatgtatca 32029731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 15 - 101
Target Start/End: Original strand, 41861778 - 41861864
Alignment:
Q  15 atttgtgtgggatccaggttgccacgtgtcagaattttgtgtgggtgtaaaaggtgtattgccacatggggtggtacatgtatcacc 101  Q
    |||||| |||| |||||||||||||||||||||||||||| |||||||||| ||||||||||||||||| |||||||||||||||||    
T  41861778 atttgtatggggtccaggttgccacgtgtcagaattttgtatgggtgtaaagggtgtattgccacatggagtggtacatgtatcacc 41861864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 15 - 101
Target Start/End: Original strand, 44326280 - 44326366
Alignment:
Q  15 atttgtgtgggatccaggttgccacgtgtcagaattttgtgtgggtgtaaaaggtgtattgccacatggggtggtacatgtatcacc 101  Q
    |||| |||||||||||| |||||||||||||||||||| |||||||||||| ||||||||||||||||| |||||||||||||||||    
T  44326280 atttatgtgggatccagattgccacgtgtcagaattttatgtgggtgtaaagggtgtattgccacatggtgtggtacatgtatcacc 44326366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 15 - 108
Target Start/End: Complemental strand, 43343622 - 43343529
Alignment:
Q  15 atttgtgtgggatccaggttgccacgtgtcagaattttgtgtgggtgtaaaaggtgtattgccacatggggtggtacatgtatcaccgctcatt 108  Q
    ||||||||||| |||| ||||||||||||||||| ||||||||| ||||||||||||||||||||||| |||||||||||||||| | ||||||    
T  43343622 atttgtgtggggtccaagttgccacgtgtcagaaatttgtgtggatgtaaaaggtgtattgccacatgaggtggtacatgtatcatcactcatt 43343529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 15 - 99
Target Start/End: Complemental strand, 24001010 - 24000926
Alignment:
Q  15 atttgtgtgggatccaggttgccacgtgtcagaattttgtgtgggtgtaaaaggtgtattgccacatggggtggtacatgtatca 99  Q
    ||||||||||| ||||| |||||||||||||||||||||| |||||||||| |||||||||||||||| ||||||||||||||||    
T  24001010 atttgtgtggggtccagattgccacgtgtcagaattttgtatgggtgtaaagggtgtattgccacatgaggtggtacatgtatca 24000926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 15 - 99
Target Start/End: Complemental strand, 42538429 - 42538345
Alignment:
Q  15 atttgtgtgggatccaggttgccacgtgtcagaattttgtgtgggtgtaaaaggtgtattgccacatggggtggtacatgtatca 99  Q
    ||||||||||| ||||| |||||||||||||||||||||| |||||||||| |||||||||||||||| ||||||||||||||||    
T  42538429 atttgtgtggggtccagattgccacgtgtcagaattttgtatgggtgtaaagggtgtattgccacatgaggtggtacatgtatca 42538345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 15 - 99
Target Start/End: Complemental strand, 44416932 - 44416848
Alignment:
Q  15 atttgtgtgggatccaggttgccacgtgtcagaattttgtgtgggtgtaaaaggtgtattgccacatggggtggtacatgtatca 99  Q
    ||||||||||| |||| ||||||||||||||||| ||||||||| ||||||||||||||||||||||| ||||||||||||||||    
T  44416932 atttgtgtggggtccaagttgccacgtgtcagaaatttgtgtggatgtaaaaggtgtattgccacatgaggtggtacatgtatca 44416848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 15 - 99
Target Start/End: Complemental strand, 5810922 - 5810838
Alignment:
Q  15 atttgtgtgggatccaggttgccacgtgtcagaattttgtgtgggtgtaaaaggtgtattgccacatggggtggtacatgtatca 99  Q
    ||||||||||| |||| |||||||| ||||| |||||||| |||||||||| |||||||||||||||||||||||||||||||||    
T  5810922 atttgtgtggggtccaagttgccacatgtcaaaattttgtatgggtgtaaagggtgtattgccacatggggtggtacatgtatca 5810838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 15 - 99
Target Start/End: Original strand, 42972954 - 42973038
Alignment:
Q  15 atttgtgtgggatccaggttgccacgtgtcagaattttgtgtgggtgtaaaaggtgtattgccacatggggtggtacatgtatca 99  Q
    ||||||||||| |||| |||||||||||||||||||||||||||||||||| ||||||||||||||| || | ||||||||||||    
T  42972954 atttgtgtggggtccaagttgccacgtgtcagaattttgtgtgggtgtaaatggtgtattgccacataggatagtacatgtatca 42973038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 15 - 99
Target Start/End: Complemental strand, 27393258 - 27393174
Alignment:
Q  15 atttgtgtgggatccaggttgccacgtgtcagaattttgtgtgggtgtaaaaggtgtattgccacatggggtggtacatgtatca 99  Q
    |||| |||||| ||||||||||| | |||||||||||| |||||||||||| | |||||||||||||||||||||||||||||||    
T  27393258 atttatgtggggtccaggttgcctcatgtcagaattttatgtgggtgtaaaggatgtattgccacatggggtggtacatgtatca 27393174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 15 - 87
Target Start/End: Complemental strand, 38160577 - 38160505
Alignment:
Q  15 atttgtgtgggatccaggttgccacgtgtcagaattttgtgtgggtgtaaaaggtgtattgccacatggggtg 87  Q
    |||| |||||| |||| |||||||||||||||||||||||||||||||||  |||||||||||||||||||||    
T  38160577 atttatgtggggtccaagttgccacgtgtcagaattttgtgtgggtgtaaggggtgtattgccacatggggtg 38160505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 15 - 101
Target Start/End: Original strand, 45326122 - 45326208
Alignment:
Q  15 atttgtgtgggatccaggttgccacgtgtcagaattttgtgtgggtgtaaaaggtgtattgccacatggggtggtacatgtatcacc 101  Q
    |||| |||||| |||||  | |||| |||||||||||| |||||||||||| ||||||||| |||||||||||||||||||||||||    
T  45326122 atttatgtggggtccagactaccacctgtcagaattttatgtgggtgtaaatggtgtattgtcacatggggtggtacatgtatcacc 45326208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 33 - 101
Target Start/End: Original strand, 40237039 - 40237107
Alignment:
Q  33 ttgccacgtgtcagaattttgtgtgggtgtaaaaggtgtattgccacatggggtggtacatgtatcacc 101  Q
    ||||||| |||||| ||||||||||||||||| ||||||||||||||||||||  ||||||||||||||    
T  40237039 ttgccacatgtcaggattttgtgtgggtgtaagaggtgtattgccacatgggggtgtacatgtatcacc 40237107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 15 - 101
Target Start/End: Complemental strand, 4638197 - 4638111
Alignment:
Q  15 atttgtgtgggatccaggttgccacgtgtcagaattttgtgtgggtgtaaaaggtgtattgccacatggggtggtacatgtatcacc 101  Q
    ||||||||||| || ||||| |||||||||||||| |||| ||| |||||| ||||||||| ||| | |||||||||||||||||||    
T  4638197 atttgtgtggggtctaggttaccacgtgtcagaatcttgtatggatgtaaagggtgtattgtcacgtagggtggtacatgtatcacc 4638111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 15 - 99
Target Start/End: Original strand, 9216403 - 9216487
Alignment:
Q  15 atttgtgtgggatccaggttgccacgtgtcagaattttgtgtgggtgtaaaaggtgtattgccacatggggtggtacatgtatca 99  Q
    ||||||||||| |  | |||||| | |||||||||||||||||| |||||||||||||||| |||||||||||||| || |||||    
T  9216403 atttgtgtggggtttaagttgccgcatgtcagaattttgtgtggatgtaaaaggtgtattgtcacatggggtggtatatatatca 9216487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 15 - 107
Target Start/End: Original strand, 43317545 - 43317637
Alignment:
Q  15 atttgtgtgggatccaggttgccacgtgtcagaattttgtgtgggtgtaaaaggtgtattgccacatggggtggtacatgtatcaccgctcat 107  Q
    ||||||||||| || || ||||||| ||||||||||||||||||||||||  ||||||||||||||   ||  |||||||||||||| |||||    
T  43317545 atttgtgtggggtctagattgccacatgtcagaattttgtgtgggtgtaaggggtgtattgccacacaagggtgtacatgtatcaccactcat 43317637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 33 - 101
Target Start/End: Complemental strand, 31408613 - 31408545
Alignment:
Q  33 ttgccacgtgtcagaattttgtgtgggtgtaaaaggtgtattgccacatggggtggtacatgtatcacc 101  Q
    ||||||| |||||| ||||| ||||||||||| |||||||||| |||||||||  ||||||||||||||    
T  31408613 ttgccacatgtcaggattttatgtgggtgtaagaggtgtattgtcacatgggggtgtacatgtatcacc 31408545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 27 - 99
Target Start/End: Original strand, 35069835 - 35069907
Alignment:
Q  27 tccaggttgccacgtgtcagaattttgtgtgggtgtaaaaggtgtattgccacatggggtggtacatgtatca 99  Q
    |||| ||||||||||||||||||||||||| | |||||| | | ||||||||||| || ||||||||||||||    
T  35069835 tccaagttgccacgtgtcagaattttgtgtagatgtaaaggatatattgccacataggatggtacatgtatca 35069907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 15 - 101
Target Start/End: Original strand, 10573851 - 10573937
Alignment:
Q  15 atttgtgtgggatccaggttgccacgtgtcagaattttgtgtgggtgtaaaaggtgtattgccacatggggtggtacatgtatcacc 101  Q
    |||| |||||| || || ||||||| | |||||||||| |||||||||||| | | ||||| |||||| ||||||||||||||||||    
T  10573851 atttatgtggggtcaagattgccacatatcagaattttatgtgggtgtaaaggatatattgtcacatgcggtggtacatgtatcacc 10573937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 24 - 101
Target Start/End: Complemental strand, 47279713 - 47279636
Alignment:
Q  24 ggatccaggttgccacgtgtcagaattttgtgtgggtgtaaaaggtgtattgccacatggggtggtacatgtatcacc 101  Q
    |||||||| || |||| | |||||||||| ||||||| |||| ||||||||| || ||||| ||||||||||||||||    
T  47279713 ggatccagattaccacatatcagaattttatgtgggtataaagggtgtattgtcagatgggatggtacatgtatcacc 47279636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 33 - 101
Target Start/End: Complemental strand, 27535211 - 27535143
Alignment:
Q  33 ttgccacgtgtcagaattttgtgtgggtgtaaaaggtgtattgccacatggggtggtacatgtatcacc 101  Q
    ||||||| |||||||||||||||||| ||||| || ||||||||||||||| |   |||||||||||||    
T  27535211 ttgccacatgtcagaattttgtgtggatgtaagagatgtattgccacatggaggaatacatgtatcacc 27535143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 15 - 80
Target Start/End: Complemental strand, 5194229 - 5194164
Alignment:
Q  15 atttgtgtgggatccaggttgccacgtgtcagaattttgtgtgggtgtaaaaggtgtattgccaca 80  Q
    ||||||||||| || || ||||||| ||||| ||||||||||||||||||  | ||||||||||||    
T  5194229 atttgtgtggggtctagattgccacatgtcaaaattttgtgtgggtgtaagggttgtattgccaca 5194164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 33 - 101
Target Start/End: Original strand, 31513407 - 31513475
Alignment:
Q  33 ttgccacgtgtcagaattttgtgtgggtgtaaaaggtgtattgccacatggggtggtacatgtatcacc 101  Q
    ||||||| |||||| ||||||||| | ||||| ||||||||||||||||  ||  ||||||||||||||    
T  31513407 ttgccacatgtcaggattttgtgtagatgtaagaggtgtattgccacataagggtgtacatgtatcacc 31513475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 33 - 101
Target Start/End: Original strand, 33384991 - 33385059
Alignment:
Q  33 ttgccacgtgtcagaattttgtgtgggtgtaaaaggtgtattgccacatggggtggtacatgtatcacc 101  Q
    ||||||| | |||| ||||||| ||||||||| |||||||||| |||||||||   |||||||||||||    
T  33384991 ttgccacatatcaggattttgtatgggtgtaagaggtgtattgtcacatgggggtttacatgtatcacc 33385059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 17 - 79
Target Start/End: Complemental strand, 35522965 - 35522902
Alignment:
Q  17 ttgtgtgggatccaggttgccacgtgtcagaattttgtgtgggtg-taaaaggtgtattgccac 79  Q
    ||||| ||||||||  | ||||||||||||| ||||||||||||| |||| |||||||||||||    
T  35522965 ttgtgcgggatccatatggccacgtgtcagatttttgtgtgggtgttaaatggtgtattgccac 35522902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 38 - 79
Target Start/End: Complemental strand, 19329910 - 19329868
Alignment:
Q  38 acgtgtcagaattttgtgtgggtgt-aaaaggtgtattgccac 79  Q
    |||||||||| |||||||||||||| |||||||||||||||||    
T  19329910 acgtgtcagatttttgtgtgggtgtcaaaaggtgtattgccac 19329868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 77; Significance: 2e-35; HSPs: 20)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 15 - 99
Target Start/End: Original strand, 7367651 - 7367735
Alignment:
Q  15 atttgtgtgggatccaggttgccacgtgtcagaattttgtgtgggtgtaaaaggtgtattgccacatggggtggtacatgtatca 99  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  7367651 atttatgtgggatccaggttgccacgtgtcagaattttgtgtgggtgtaaagggtgtattgccacatggggtggtacatgtatca 7367735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 15 - 106
Target Start/End: Original strand, 7292849 - 7292940
Alignment:
Q  15 atttgtgtgggatccaggttgccacgtgtcagaattttgtgtgggtgtaaaaggtgtattgccacatggggtggtacatgtatcaccgctca 106  Q
    ||||||||||| |||||||||||||||||||||||||||| || ||||||| ||||||||||||||||||||||||||||||||||||||||    
T  7292849 atttgtgtggggtccaggttgccacgtgtcagaattttgtttgtgtgtaaagggtgtattgccacatggggtggtacatgtatcaccgctca 7292940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 15 - 105
Target Start/End: Complemental strand, 26670007 - 26669917
Alignment:
Q  15 atttgtgtgggatccaggttgccacgtgtcagaattttgtgtgggtgtaaaaggtgtattgccacatggggtggtacatgtatcaccgctc 105  Q
    ||||||||||  ||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||| |||||||||||    
T  26670007 atttgtgtggagtccaggttgccacgtgtcagaattttgtgtgggtgtaaagggtgtattgccacatgaggtggtacatatatcaccgctc 26669917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 15 - 99
Target Start/End: Original strand, 21280031 - 21280115
Alignment:
Q  15 atttgtgtgggatccaggttgccacgtgtcagaattttgtgtgggtgtaaaaggtgtattgccacatggggtggtacatgtatca 99  Q
    ||||||||||| |||| |||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||    
T  21280031 atttgtgtggggtccaagttgccacgtgtcagaattttgtgtgggtgtaaagggtatattgccacatggggtggtacatgtatca 21280115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 15 - 101
Target Start/End: Original strand, 3213502 - 3213588
Alignment:
Q  15 atttgtgtgggatccaggttgccacgtgtcagaattttgtgtgggtgtaaaaggtgtattgccacatggggtggtacatgtatcacc 101  Q
    |||| |||||| ||||| |||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||    
T  3213502 atttatgtggggtccagattgccacgtgtcagaattttatgtgggtgtaaagggtgtattgccacatggggtggtacatgtatcacc 3213588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 15 - 99
Target Start/End: Complemental strand, 9698331 - 9698247
Alignment:
Q  15 atttgtgtgggatccaggttgccacgtgtcagaattttgtgtgggtgtaaaaggtgtattgccacatggggtggtacatgtatca 99  Q
    ||||||||||| ||||| |||||||||||||||||||||| |||||||||| |||||||||||||||| ||||||||||||||||    
T  9698331 atttgtgtggggtccagattgccacgtgtcagaattttgtatgggtgtaaagggtgtattgccacatgaggtggtacatgtatca 9698247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 15 - 111
Target Start/End: Complemental strand, 13743219 - 13743123
Alignment:
Q  15 atttgtgtgggatccaggttgccacgtgtcagaattttgtgtgggtgtaaaaggtgtattgccacatggggtggtacatgtatcaccgctcattaaa 111  Q
    ||||||||||| ||||||||||||||||||||||| ||||||||||||||| | | ||||||||||| ||||||||||||||||||| || ||||||    
T  13743219 atttgtgtggggtccaggttgccacgtgtcagaatcttgtgtgggtgtaaaggatatattgccacatagggtggtacatgtatcaccacttattaaa 13743123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 15 - 111
Target Start/End: Complemental strand, 13748719 - 13748623
Alignment:
Q  15 atttgtgtgggatccaggttgccacgtgtcagaattttgtgtgggtgtaaaaggtgtattgccacatggggtggtacatgtatcaccgctcattaaa 111  Q
    ||||||||||| ||||||||||||||||||||||| ||||||||||||||| | | ||||||||||| ||||||||||||||||||| || ||||||    
T  13748719 atttgtgtggggtccaggttgccacgtgtcagaatcttgtgtgggtgtaaaggatatattgccacatagggtggtacatgtatcaccacttattaaa 13748623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 15 - 99
Target Start/End: Original strand, 30736084 - 30736168
Alignment:
Q  15 atttgtgtgggatccaggttgccacgtgtcagaattttgtgtgggtgtaaaaggtgtattgccacatggggtggtacatgtatca 99  Q
    |||| |||||| |||||||||||||||||||||||||||||||| |||||| |||||||||||||||||| ||||||||||||||    
T  30736084 atttatgtggggtccaggttgccacgtgtcagaattttgtgtggatgtaaagggtgtattgccacatgggatggtacatgtatca 30736168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 15 - 101
Target Start/End: Complemental strand, 21293675 - 21293589
Alignment:
Q  15 atttgtgtgggatccaggttgccacgtgtcagaattttgtgtgggtgtaaaaggtgtattgccacatggggtggtacatgtatcacc 101  Q
    |||| |||||| ||||| |||||||||||||||||||| |||||||||||| |||||||||||||||| ||||||||||||||||||    
T  21293675 atttatgtggggtccagattgccacgtgtcagaattttatgtgggtgtaaagggtgtattgccacatgaggtggtacatgtatcacc 21293589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 15 - 99
Target Start/End: Complemental strand, 24203985 - 24203901
Alignment:
Q  15 atttgtgtgggatccaggttgccacgtgtcagaattttgtgtgggtgtaaaaggtgtattgccacatggggtggtacatgtatca 99  Q
    ||||||||||| |||| ||||||||||||||||||||||||||| |||||| ||||||||| ||||||| |||||||||||||||    
T  24203985 atttgtgtggggtccaagttgccacgtgtcagaattttgtgtggatgtaaagggtgtattgtcacatggagtggtacatgtatca 24203901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 15 - 99
Target Start/End: Complemental strand, 7273333 - 7273249
Alignment:
Q  15 atttgtgtgggatccaggttgccacgtgtcagaattttgtgtgggtgtaaaaggtgtattgccacatggggtggtacatgtatca 99  Q
    |||| |||||| |||| ||||||||||||||||||||||||||||||||||  ||||||| ||||||||||||||||||| ||||    
T  7273333 atttatgtggggtccaagttgccacgtgtcagaattttgtgtgggtgtaaagagtgtattaccacatggggtggtacatgcatca 7273249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 22 - 99
Target Start/End: Original strand, 30014452 - 30014529
Alignment:
Q  22 tgggatccaggttgccacgtgtcagaattttgtgtgggtgtaaaaggtgtattgccacatggggtggtacatgtatca 99  Q
    |||| |||| ||| ||||||||||||||||||||||| |||||| ||||||||||||||||||||| |||||||||||    
T  30014452 tggggtccaagttaccacgtgtcagaattttgtgtggatgtaaagggtgtattgccacatggggtgatacatgtatca 30014529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 15 - 99
Target Start/End: Original strand, 26466901 - 26466985
Alignment:
Q  15 atttgtgtgggatccaggttgccacgtgtcagaattttgtgtgggtgtaaaaggtgtattgccacatggggtggtacatgtatca 99  Q
    |||||| |||| | ||||||||||||| |||| ||||||| |||||||||||||||||||||||||| |||||||| ||||||||    
T  26466901 atttgtttggggttcaggttgccacgtatcaggattttgtatgggtgtaaaaggtgtattgccacatagggtggtaaatgtatca 26466985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 33 - 101
Target Start/End: Original strand, 33242523 - 33242591
Alignment:
Q  33 ttgccacgtgtcagaattttgtgtgggtgtaaaaggtgtattgccacatggggtggtacatgtatcacc 101  Q
    ||||||| |||||| ||||||||||||||||| ||||||||||||||||||||  ||||||||||||||    
T  33242523 ttgccacatgtcaggattttgtgtgggtgtaagaggtgtattgccacatgggggtgtacatgtatcacc 33242591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 33 - 101
Target Start/End: Original strand, 27441662 - 27441730
Alignment:
Q  33 ttgccacgtgtcagaattttgtgtgggtgtaaaaggtgtattgccacatggggtggtacatgtatcacc 101  Q
    ||||||| |||||| ||||| ||||||||||| |||||||||||||||||||   ||||||||||||||    
T  27441662 ttgccacatgtcaggattttatgtgggtgtaagaggtgtattgccacatgggtgtgtacatgtatcacc 27441730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 33 - 101
Target Start/End: Original strand, 33254034 - 33254102
Alignment:
Q  33 ttgccacgtgtcagaattttgtgtgggtgtaaaaggtgtattgccacatggggtggtacatgtatcacc 101  Q
    ||||||| |||| | ||||||||||||| |||||||||||||||||||||| |  ||||||||||||||    
T  33254034 ttgccacatgtccggattttgtgtgggtataaaaggtgtattgccacatggaggtgtacatgtatcacc 33254102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 33 - 81
Target Start/End: Complemental strand, 31109202 - 31109154
Alignment:
Q  33 ttgccacgtgtcagaattttgtgtgggtgtaaaaggtgtattgccacat 81  Q
    ||||||| |||||| ||||||||||||||||| ||||||||||||||||    
T  31109202 ttgccacatgtcaggattttgtgtgggtgtaagaggtgtattgccacat 31109154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 38 - 79
Target Start/End: Original strand, 22880690 - 22880732
Alignment:
Q  38 acgtgtcagaattttgtgtgggtgt-aaaaggtgtattgccac 79  Q
    ||||||||||||||||||||||||| ||| |||||||||||||    
T  22880690 acgtgtcagaattttgtgtgggtgtcaaagggtgtattgccac 22880732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 38 - 78
Target Start/End: Complemental strand, 29857895 - 29857854
Alignment:
Q  38 acgtgtcagaattttgtgtgggtg-taaaaggtgtattgcca 78  Q
    |||||||||| ||||||||||||| |||||||||||||||||    
T  29857895 acgtgtcagatttttgtgtgggtgttaaaaggtgtattgcca 29857854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 77; Significance: 2e-35; HSPs: 28)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 15 - 99
Target Start/End: Original strand, 30838734 - 30838818
Alignment:
Q  15 atttgtgtgggatccaggttgccacgtgtcagaattttgtgtgggtgtaaaaggtgtattgccacatggggtggtacatgtatca 99  Q
    ||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  30838734 atttgtgtggggtccaggttgccacgtgtcagaattttgtgtaggtgtaaaaggtgtattgccacatggggtggtacatgtatca 30838818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 15 - 99
Target Start/End: Complemental strand, 4764724 - 4764640
Alignment:
Q  15 atttgtgtgggatccaggttgccacgtgtcagaattttgtgtgggtgtaaaaggtgtattgccacatggggtggtacatgtatca 99  Q
    ||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||    
T  4764724 atttgtgtggggtccaggttgccacgtgtcagaattttgtgtggatgtaaaaggtgtattgccacatgaggtggtacatgtatca 4764640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 15 - 99
Target Start/End: Complemental strand, 42849857 - 42849773
Alignment:
Q  15 atttgtgtgggatccaggttgccacgtgtcagaattttgtgtgggtgtaaaaggtgtattgccacatggggtggtacatgtatca 99  Q
    ||||||||||| |||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  42849857 atttgtgtggggtccaagttgccacgtgtcagaattttgtgtgggtgtaaagggtgtattgccacatggggtggtacatgtatca 42849773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 15 - 99
Target Start/End: Complemental strand, 43335761 - 43335677
Alignment:
Q  15 atttgtgtgggatccaggttgccacgtgtcagaattttgtgtgggtgtaaaaggtgtattgccacatggggtggtacatgtatca 99  Q
    |||| ||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||    
T  43335761 atttatgtgggatccaggttgccacgtgtcagaattttgtgtggatgtaaaaggtatattgccacatggggtggtacatgtatca 43335677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 15 - 99
Target Start/End: Original strand, 19047259 - 19047343
Alignment:
Q  15 atttgtgtgggatccaggttgccacgtgtcagaattttgtgtgggtgtaaaaggtgtattgccacatggggtggtacatgtatca 99  Q
    ||||||||||| ||||| ||||||||||||| |||||||| |||||||||| |||||||||||||||||||||||||||||||||    
T  19047259 atttgtgtggggtccagattgccacgtgtcaaaattttgtatgggtgtaaagggtgtattgccacatggggtggtacatgtatca 19047343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 15 - 92
Target Start/End: Original strand, 1750516 - 1750593
Alignment:
Q  15 atttgtgtgggatccaggttgccacgtgtcagaattttgtgtgggtgtaaaaggtgtattgccacatggggtggtaca 92  Q
    ||||||||||| ||||| ||||||||||||||||||||||||| ||||||| ||||| ||||||||||||||||||||    
T  1750516 atttgtgtggggtccagattgccacgtgtcagaattttgtgtgagtgtaaagggtgtgttgccacatggggtggtaca 1750593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 32 - 109
Target Start/End: Original strand, 16096867 - 16096944
Alignment:
Q  32 gttgccacgtgtcagaattttgtgtgggtgtaaaaggtgtattgccacatggggtggtacatgtatcaccgctcatta 109  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||  ||||||||||||||| | |||||||    
T  16096867 gttgccacgtgtcagaattttgtgtgggtgtaaagggtgtattgccacatgatgtggtacatgtatcatcactcatta 16096944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 15 - 96
Target Start/End: Complemental strand, 43490399 - 43490318
Alignment:
Q  15 atttgtgtgggatccaggttgccacgtgtcagaattttgtgtgggtgtaaaaggtgtattgccacatggggtggtacatgta 96  Q
    |||| |||||| ||||| |||||||||||||||||||||| |||||||||| |||||||||||||||| |||||||||||||    
T  43490399 atttatgtggggtccagattgccacgtgtcagaattttgtatgggtgtaaagggtgtattgccacatgaggtggtacatgta 43490318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 15 - 105
Target Start/End: Complemental strand, 12302251 - 12302161
Alignment:
Q  15 atttgtgtgggatccaggttgccacgtgtcagaattttgtgtgggtgtaaaaggtgtattgccacatggggtggtacatgtatcaccgctc 105  Q
    |||| |||||| |||||||| ||| ||||||||||||||||||| |||||| | ||||||||||||||||||| ||||||||||| |||||    
T  12302251 atttatgtggggtccaggttaccatgtgtcagaattttgtgtggatgtaaaggatgtattgccacatggggtgatacatgtatcatcgctc 12302161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 33 - 101
Target Start/End: Complemental strand, 11825634 - 11825566
Alignment:
Q  33 ttgccacgtgtcagaattttgtgtgggtgtaaaaggtgtattgccacatggggtggtacatgtatcacc 101  Q
    ||||||| |||||| ||||||||||||||||| ||||||||||||||||||||  ||||||||||||||    
T  11825634 ttgccacatgtcaggattttgtgtgggtgtaagaggtgtattgccacatggggatgtacatgtatcacc 11825566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 33 - 101
Target Start/End: Complemental strand, 34895721 - 34895653
Alignment:
Q  33 ttgccacgtgtcagaattttgtgtgggtgtaaaaggtgtattgccacatggggtggtacatgtatcacc 101  Q
    ||||||| |||||| ||||||||||||||||| ||||||||||||||||||||  ||||||||||||||    
T  34895721 ttgccacatgtcaggattttgtgtgggtgtaagaggtgtattgccacatgggggtgtacatgtatcacc 34895653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 33 - 108
Target Start/End: Original strand, 43114677 - 43114752
Alignment:
Q  33 ttgccacgtgtcagaattttgtgtgggtgtaaaaggtgtattgccacatggggtggtacatgtatcaccgctcatt 108  Q
    ||||||| |||||| ||||||||||||||||| ||||||||||||||||| ||  |||||||||||||| ||||||    
T  43114677 ttgccacttgtcaggattttgtgtgggtgtaagaggtgtattgccacatgagggtgtacatgtatcaccactcatt 43114752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 33 - 107
Target Start/End: Complemental strand, 966814 - 966740
Alignment:
Q  33 ttgccacgtgtcagaattttgtgtgggtgtaaaaggtgtattgccacatggggtggtacatgtatcaccgctcat 107  Q
    ||||||| |||||| ||||||||||||||||| ||||||||| ||||||||||  |||||||||||||| |||||    
T  966814 ttgccacatgtcaggattttgtgtgggtgtaagaggtgtatttccacatggggatgtacatgtatcaccactcat 966740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 33 - 101
Target Start/End: Complemental strand, 6518474 - 6518406
Alignment:
Q  33 ttgccacgtgtcagaattttgtgtgggtgtaaaaggtgtattgccacatggggtggtacatgtatcacc 101  Q
    ||||||| |||||| |||||||||||||||||||||||||||| ||||||| |  ||||||||||||||    
T  6518474 ttgccacatgtcaggattttgtgtgggtgtaaaaggtgtattgacacatggaggtgtacatgtatcacc 6518406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 33 - 101
Target Start/End: Original strand, 18491825 - 18491893
Alignment:
Q  33 ttgccacgtgtcagaattttgtgtgggtgtaaaaggtgtattgccacatggggtggtacatgtatcacc 101  Q
    ||||||| ||| || ||||||||||||||||| ||||||||||||||||||||  ||||||||||||||    
T  18491825 ttgccacatgttaggattttgtgtgggtgtaagaggtgtattgccacatgggggtgtacatgtatcacc 18491893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 23 - 99
Target Start/End: Complemental strand, 34817766 - 34817690
Alignment:
Q  23 gggatccaggttgccacgtgtcagaattttgtgtgggtgtaaaaggtgtattgccacatggggtggtacatgtatca 99  Q
    ||||||||||||||||| |||||||||||||| |||||||||  || | ||||||||||||||  ||||||||||||    
T  34817766 gggatccaggttgccacatgtcagaattttgtatgggtgtaaggggagcattgccacatgggggtgtacatgtatca 34817690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 33 - 101
Target Start/End: Complemental strand, 41281954 - 41281886
Alignment:
Q  33 ttgccacgtgtcagaattttgtgtgggtgtaaaaggtgtattgccacatggggtggtacatgtatcacc 101  Q
    ||||||| |||||| ||||||||||||||||| ||||||||||||| ||||||  ||||||||||||||    
T  41281954 ttgccacatgtcaggattttgtgtgggtgtaagaggtgtattgccatatgggggtgtacatgtatcacc 41281886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 15 - 99
Target Start/End: Original strand, 42026871 - 42026955
Alignment:
Q  15 atttgtgtgggatccaggttgccacgtgtcagaattttgtgtgggtgtaaaaggtgtattgccacatggggtggtacatgtatca 99  Q
    ||||||||||| || ||||||| |  ||||||||||||||||||||||||  ||||||||||||||||| |  ||||||||||||    
T  42026871 atttgtgtggggtctaggttgcaagatgtcagaattttgtgtgggtgtaaggggtgtattgccacatggaggtgtacatgtatca 42026955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 36 - 99
Target Start/End: Complemental strand, 39149270 - 39149208
Alignment:
Q  36 ccacgtgtcagaattttgtgtgggtgtaaaaggtgtattgccacatggggtggtacatgtatca 99  Q
    |||||| ||| |||||||||||||||||||||||||||| |||||| |||||||||||||||||    
T  39149270 ccacgtctcataattttgtgtgggtgtaaaaggtgtattaccacat-gggtggtacatgtatca 39149208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 41 - 106
Target Start/End: Complemental strand, 12415432 - 12415367
Alignment:
Q  41 tgtcagaattttgtgtgggtgtaaaaggtgtattgccacatggggtggtacatgtatcaccgctca 106  Q
    |||||||||||||||||| ||||| |||||||||||||||||||   |||||||||||||| ||||    
T  12415432 tgtcagaattttgtgtggatgtaagaggtgtattgccacatgggagtgtacatgtatcaccactca 12415367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 41 - 106
Target Start/End: Complemental strand, 12427492 - 12427427
Alignment:
Q  41 tgtcagaattttgtgtgggtgtaaaaggtgtattgccacatggggtggtacatgtatcaccgctca 106  Q
    |||||||||||||||||| ||||| |||||||||||||||||||   |||||||||||||| ||||    
T  12427492 tgtcagaattttgtgtggatgtaagaggtgtattgccacatgggagtgtacatgtatcaccactca 12427427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 33 - 106
Target Start/End: Original strand, 16804088 - 16804161
Alignment:
Q  33 ttgccacgtgtcagaattttgtgtgggtgtaaaaggtgtattgccacatggggtggtacatgtatcaccgctca 106  Q
    ||||||| |||||||||||||||||||||||| |||||||||| || || |||  |||||||||||||| ||||    
T  16804088 ttgccacatgtcagaattttgtgtgggtgtaagaggtgtattgtcatataggggtgtacatgtatcaccactca 16804161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 33 - 106
Target Start/End: Original strand, 16843370 - 16843443
Alignment:
Q  33 ttgccacgtgtcagaattttgtgtgggtgtaaaaggtgtattgccacatggggtggtacatgtatcaccgctca 106  Q
    ||||||| |||||||||||||||||||||||| |||||||||| || || |||  |||||||||||||| ||||    
T  16843370 ttgccacatgtcagaattttgtgtgggtgtaagaggtgtattgtcatataggggtgtacatgtatcaccactca 16843443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 33 - 108
Target Start/End: Complemental strand, 4299400 - 4299325
Alignment:
Q  33 ttgccacgtgtcagaattttgtgtgggtgtaaaaggtgtattgccacatggggtggtacatgtatcaccgctcatt 108  Q
    ||||||| |||||| ||||||||||||||||| || ||||||||||||||  |  |||||||||||||| ||||||    
T  4299400 ttgccacatgtcaggattttgtgtgggtgtaagagatgtattgccacatgaaggtgtacatgtatcaccactcatt 4299325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 33 - 99
Target Start/End: Complemental strand, 12531643 - 12531577
Alignment:
Q  33 ttgccacgtgtcagaattttgtgtgggtgtaaaaggtgtattgccacatggggtggtacatgtatca 99  Q
    ||||||| |||||| ||||||||||||||||| ||||||||||||| |||| |  ||||||||||||    
T  12531643 ttgccacatgtcaggattttgtgtgggtgtaagaggtgtattgccatatggaggtgtacatgtatca 12531577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 15 - 72
Target Start/End: Complemental strand, 13780733 - 13780676
Alignment:
Q  15 atttgtgtgggatccaggttgccacgtgtcagaattttgtgtgggtgtaaaaggtgta 72  Q
    |||| |||||| ||||||||||||| |||||||||||||| | |||||||| ||||||    
T  13780733 atttatgtggggtccaggttgccacatgtcagaattttgtataggtgtaaagggtgta 13780676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 17 - 79
Target Start/End: Original strand, 40613913 - 40613976
Alignment:
Q  17 ttgtgtgggatccaggttgccacgtgtcagaattttgtgtgggtgt-aaaaggtgtattgccac 79  Q
    ||||| ||| |||| || ||||||||||||| |||||||||||||| ||| |||||||||||||    
T  40613913 ttgtgcggggtccatgtggccacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccac 40613976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 38 - 79
Target Start/End: Complemental strand, 40701546 - 40701504
Alignment:
Q  38 acgtgtcagaattttgtgtgggtgt-aaaaggtgtattgccac 79  Q
    |||||||||| |||||||||||||| |||||||||||||||||    
T  40701546 acgtgtcagatttttgtgtgggtgtcaaaaggtgtattgccac 40701504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 76; Significance: 6e-35; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 15 - 106
Target Start/End: Complemental strand, 41334661 - 41334570
Alignment:
Q  15 atttgtgtgggatccaggttgccacgtgtcagaattttgtgtgggtgtaaaaggtgtattgccacatggggtggtacatgtatcaccgctca 106  Q
    ||||||||||| |||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||| ||||    
T  41334661 atttgtgtggggtccaggttgccacgtgtcagaattttgtatgggtgtaaagggtgtattgccacatggggtggtacatgtatcaccactca 41334570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 15 - 99
Target Start/End: Complemental strand, 25914994 - 25914910
Alignment:
Q  15 atttgtgtgggatccaggttgccacgtgtcagaattttgtgtgggtgtaaaaggtgtattgccacatggggtggtacatgtatca 99  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||    
T  25914994 atttgtgtggggtccaggttgccacgtgtcagaattttgtgtgggtgtaaatggtgtattgccacatgaggtggtacatgtatca 25914910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 15 - 99
Target Start/End: Complemental strand, 2614647 - 2614563
Alignment:
Q  15 atttgtgtgggatccaggttgccacgtgtcagaattttgtgtgggtgtaaaaggtgtattgccacatggggtggtacatgtatca 99  Q
    ||||||||||| ||||| |||||||||||||||||||||| |||||||||| |||||||||||||||| ||||||||||||||||    
T  2614647 atttgtgtggggtccagattgccacgtgtcagaattttgtatgggtgtaaagggtgtattgccacatgaggtggtacatgtatca 2614563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 15 - 99
Target Start/End: Original strand, 18034084 - 18034168
Alignment:
Q  15 atttgtgtgggatccaggttgccacgtgtcagaattttgtgtgggtgtaaaaggtgtattgccacatggggtggtacatgtatca 99  Q
    ||||||||||| |||||||||||||||||||||||||| | |||||||||| |||||||||||| ||||||||||||||||||||    
T  18034084 atttgtgtggggtccaggttgccacgtgtcagaattttatatgggtgtaaagggtgtattgccatatggggtggtacatgtatca 18034168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 15 - 99
Target Start/End: Original strand, 33801571 - 33801655
Alignment:
Q  15 atttgtgtgggatccaggttgccacgtgtcagaattttgtgtgggtgtaaaaggtgtattgccacatggggtggtacatgtatca 99  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||  |||||||||||||||||  ||||||| |||||    
T  33801571 atttgtgtgggatccaagttgccacgtgtcagaattttgtgtgggtgtaaagagtgtattgccacatgggaaggtacatatatca 33801655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 15 - 101
Target Start/End: Original strand, 5257097 - 5257183
Alignment:
Q  15 atttgtgtgggatccaggttgccacgtgtcagaattttgtgtgggtgtaaaaggtgtattgccacatggggtggtacatgtatcacc 101  Q
    |||| |||||| || || ||||||| |||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||    
T  5257097 atttatgtggggtcaagattgccacatgtcagaattttatgtgggtgtaaagggtgtattgccacatggggtggtacatgtatcacc 5257183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 15 - 99
Target Start/End: Original strand, 7617235 - 7617319
Alignment:
Q  15 atttgtgtgggatccaggttgccacgtgtcagaattttgtgtgggtgtaaaaggtgtattgccacatggggtggtacatgtatca 99  Q
    |||| ||||||||| | |||| ||| |||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||    
T  7617235 atttatgtgggatctaagttgtcacatgtcagaattttgtgttggtgtaaaaggtgtattgccacatggggtgatacatgtatca 7617319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 15 - 80
Target Start/End: Original strand, 22512407 - 22512472
Alignment:
Q  15 atttgtgtgggatccaggttgccacgtgtcagaattttgtgtgggtgtaaaaggtgtattgccaca 80  Q
    ||||||||||| |||| ||||||||||||||||||||||||||| |||||| ||||||||||||||    
T  22512407 atttgtgtggggtccaagttgccacgtgtcagaattttgtgtggatgtaaagggtgtattgccaca 22512472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 33 - 106
Target Start/End: Complemental strand, 30622699 - 30622626
Alignment:
Q  33 ttgccacgtgtcagaattttgtgtgggtgtaaaaggtgtattgccacatggggtggtacatgtatcaccgctca 106  Q
    ||||||| ||||| |||||||||||||||||| ||||||||||||||||||||  |||||||||||||| ||||    
T  30622699 ttgccacatgtcaaaattttgtgtgggtgtaagaggtgtattgccacatgggggtgtacatgtatcaccactca 30622626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 33 - 101
Target Start/End: Complemental strand, 32473374 - 32473306
Alignment:
Q  33 ttgccacgtgtcagaattttgtgtgggtgtaaaaggtgtattgccacatggggtggtacatgtatcacc 101  Q
    ||||||| |||||||||||||||||||||||| |||||||||||||||||| |  ||||||||||||||    
T  32473374 ttgccacatgtcagaattttgtgtgggtgtaagaggtgtattgccacatggaggtgtacatgtatcacc 32473306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 15 - 99
Target Start/End: Original strand, 38470681 - 38470765
Alignment:
Q  15 atttgtgtgggatccaggttgccacgtgtcagaattttgtgtgggtgtaaaaggtgtattgccacatggggtggtacatgtatca 99  Q
    |||| |||||| ||||| || |||||| |||||||||| |||||||||||| |||||||||||| ||| ||||||||||||||||    
T  38470681 atttatgtggggtccagattaccacgtatcagaattttatgtgggtgtaaagggtgtattgccatatgaggtggtacatgtatca 38470765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 15 - 110
Target Start/End: Complemental strand, 39122354 - 39122259
Alignment:
Q  15 atttgtgtgggatccaggttgccacgtgtcagaattttgtgtgggtgtaaaaggtgtattgccacatggggtggtacatgtatcaccgctcattaa 110  Q
    ||||||||||| |  |||||||||| ||||||||| |||||||| |||||| | | ||||| ||||||||||||||||||||||||| ||| ||||    
T  39122354 atttgtgtggggtttaggttgccacatgtcagaatcttgtgtggatgtaaatgatatattgtcacatggggtggtacatgtatcaccactctttaa 39122259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 33 - 99
Target Start/End: Original strand, 17208194 - 17208260
Alignment:
Q  33 ttgccacgtgtcagaattttgtgtgggtgtaaaaggtgtattgccacatggggtggtacatgtatca 99  Q
    ||||||| |||||| ||||||||||| ||||| |||||||||| ||||| |||  ||||||||||||    
T  17208194 ttgccacatgtcaggattttgtgtggatgtaagaggtgtattgtcacataggggtgtacatgtatca 17208260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 36 - 79
Target Start/End: Complemental strand, 6679768 - 6679724
Alignment:
Q  36 ccacgtgtcagaattttgtgtgggtgt-aaaaggtgtattgccac 79  Q
    |||||||||||| |||||||||||||| |||||||||||||||||    
T  6679768 ccacgtgtcagatttttgtgtgggtgtcaaaaggtgtattgccac 6679724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 17 - 79
Target Start/End: Complemental strand, 35785288 - 35785225
Alignment:
Q  17 ttgtgtgggatccaggttgccacgtgtcagaattttgtgtgggtgt-aaaaggtgtattgccac 79  Q
    ||||| |||||||| ||  | |||||||||| |||||||||||||| |||||||||||||||||    
T  35785288 ttgtgcgggatccacgtaactacgtgtcagatttttgtgtgggtgtcaaaaggtgtattgccac 35785225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 36 - 79
Target Start/End: Complemental strand, 28177845 - 28177801
Alignment:
Q  36 ccacgtgtcagaattttgtgtgggtgt-aaaaggtgtattgccac 79  Q
    |||||||||||| |||||||||||||| ||| |||||||||||||    
T  28177845 ccacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccac 28177801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 73; Significance: 4e-33; HSPs: 41)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 15 - 99
Target Start/End: Complemental strand, 28982820 - 28982736
Alignment:
Q  15 atttgtgtgggatccaggttgccacgtgtcagaattttgtgtgggtgtaaaaggtgtattgccacatggggtggtacatgtatca 99  Q
    ||||||||||| |||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  28982820 atttgtgtggggtccaagttgccacgtgtcagaattttgtgtggatgtaaaaggtgtattgccacatggggtggtacatgtatca 28982736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 15 - 109
Target Start/End: Original strand, 35017834 - 35017928
Alignment:
Q  15 atttgtgtgggatccaggttgccacgtgtcagaattttgtgtgggtgtaaaaggtgtattgccacatggggtggtacatgtatcaccgctcatta 109  Q
    ||||||||||| |||| ||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||| | |||||||    
T  35017834 atttgtgtggggtccaagttgccacgtgtcagaattttgtgtggatgtaaaagatgtattgccacatggggtggtacatgtatcatcactcatta 35017928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 15 - 99
Target Start/End: Original strand, 27550411 - 27550495
Alignment:
Q  15 atttgtgtgggatccaggttgccacgtgtcagaattttgtgtgggtgtaaaaggtgtattgccacatggggtggtacatgtatca 99  Q
    |||| |||||| |||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||    
T  27550411 atttatgtggggtccaggttgccacgtgtcagaattttgtatgggtgtaaagggtgtattgccacatggggtggtacatgtatca 27550495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 15 - 99
Target Start/End: Original strand, 33703243 - 33703327
Alignment:
Q  15 atttgtgtgggatccaggttgccacgtgtcagaattttgtgtgggtgtaaaaggtgtattgccacatggggtggtacatgtatca 99  Q
    ||||||| |||||||| |||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||    
T  33703243 atttgtgcgggatccaagttgccacgtgtcagaattttgtgtgggtgtaaagggtgtattgccatatggggtggtacatgtatca 33703327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 15 - 99
Target Start/End: Complemental strand, 1771264 - 1771180
Alignment:
Q  15 atttgtgtgggatccaggttgccacgtgtcagaattttgtgtgggtgtaaaaggtgtattgccacatggggtggtacatgtatca 99  Q
    |||| |||||| |||| |||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  1771264 atttatgtggggtccaagttgccacgtctcagaattttgtgtgggtgtaaagggtgtattgccacatggggtggtacatgtatca 1771180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 15 - 99
Target Start/End: Original strand, 23036082 - 23036166
Alignment:
Q  15 atttgtgtgggatccaggttgccacgtgtcagaattttgtgtgggtgtaaaaggtgtattgccacatggggtggtacatgtatca 99  Q
    |||| |||||| ||||||||||||||||||||||||||||||||||||||| | ||| |||||||||||||||||||||||||||    
T  23036082 atttatgtggggtccaggttgccacgtgtcagaattttgtgtgggtgtaaaggatgtgttgccacatggggtggtacatgtatca 23036166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 15 - 99
Target Start/End: Complemental strand, 51512263 - 51512179
Alignment:
Q  15 atttgtgtgggatccaggttgccacgtgtcagaattttgtgtgggtgtaaaaggtgtattgccacatggggtggtacatgtatca 99  Q
    ||||||||||| |||||||||||||||||||||||||||||||||| | |||| ||||||||||| |||||||||||||||||||    
T  51512263 atttgtgtggggtccaggttgccacgtgtcagaattttgtgtgggtattaaagatgtattgccacgtggggtggtacatgtatca 51512179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 15 - 112
Target Start/End: Complemental strand, 43514684 - 43514587
Alignment:
Q  15 atttgtgtgggatccaggttgccacgtgtcagaattttgtgtgggtgtaaaaggtgtattgccacatggggtggtacatgtatcaccgctcattaaat 112  Q
    ||||||||||| || ||||||||||||||||||||||| ||||| ||||||  |||||||||||||||||||||||||||||||| | ||||| ||||    
T  43514684 atttgtgtggggtctaggttgccacgtgtcagaattttttgtggatgtaaagagtgtattgccacatggggtggtacatgtatcatcactcataaaat 43514587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 15 - 99
Target Start/End: Original strand, 43735844 - 43735928
Alignment:
Q  15 atttgtgtgggatccaggttgccacgtgtcagaattttgtgtgggtgtaaaaggtgtattgccacatggggtggtacatgtatca 99  Q
    |||||||||||||||| |||| |||||||||||||||| ||||| |||||| ||||||||||||| |||||||||||||||||||    
T  43735844 atttgtgtgggatccaagttgtcacgtgtcagaattttatgtggatgtaaagggtgtattgccacgtggggtggtacatgtatca 43735928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 15 - 101
Target Start/End: Complemental strand, 27893840 - 27893754
Alignment:
Q  15 atttgtgtgggatccaggttgccacgtgtcagaattttgtgtgggtgtaaaaggtgtattgccacatggggtggtacatgtatcacc 101  Q
    |||| |||||| || || ||||||| |||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||    
T  27893840 atttatgtggggtcaagattgccacatgtcagaattttatgtgggtgtaaagggtgtattgccacatggggtggtacatgtatcacc 27893754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 15 - 99
Target Start/End: Original strand, 25051795 - 25051879
Alignment:
Q  15 atttgtgtgggatccaggttgccacgtgtcagaattttgtgtgggtgtaaaaggtgtattgccacatggggtggtacatgtatca 99  Q
    |||| |||||| |||| ||||||||||||||||||||||||||| |||||| | ||||||||||| |||||||||||||||||||    
T  25051795 atttatgtggggtccaagttgccacgtgtcagaattttgtgtggatgtaaatgatgtattgccacgtggggtggtacatgtatca 25051879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 15 - 101
Target Start/End: Complemental strand, 55966344 - 55966258
Alignment:
Q  15 atttgtgtgggatccaggttgccacgtgtcagaattttgtgtgggtgtaaaaggtgtattgccacatggggtggtacatgtatcacc 101  Q
    |||| |||||| || || ||||||| |||||||||||| |||||||||||| ||||||||||||||||| |||||||||||||||||    
T  55966344 atttatgtggggtctagattgccacctgtcagaattttatgtgggtgtaaagggtgtattgccacatggagtggtacatgtatcacc 55966258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 23 - 107
Target Start/End: Complemental strand, 45490303 - 45490219
Alignment:
Q  23 gggatccaggttgccacgtgtcagaattttgtgtgggtgtaaaaggtgtattgccacatggggtggtacatgtatcaccgctcat 107  Q
    ||||||||||||||||||||||||||| ||||||||||||||| | | ||||||||||| ||||  |||||||||||||| ||||    
T  45490303 gggatccaggttgccacgtgtcagaatcttgtgtgggtgtaaatgatatattgccacatagggtactacatgtatcaccgatcat 45490219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 33 - 99
Target Start/End: Original strand, 12497076 - 12497142
Alignment:
Q  33 ttgccacgtgtcagaattttgtgtgggtgtaaaaggtgtattgccacatggggtggtacatgtatca 99  Q
    ||||||||||| |||||||||||||||||||||| |||||||| ||||||||||||| |||||||||    
T  12497076 ttgccacgtgttagaattttgtgtgggtgtaaaacgtgtattgtcacatggggtggtgcatgtatca 12497142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 15 - 101
Target Start/End: Original strand, 27864666 - 27864752
Alignment:
Q  15 atttgtgtgggatccaggttgccacgtgtcagaattttgtgtgggtgtaaaaggtgtattgccacatggggtggtacatgtatcacc 101  Q
    |||| |||||| | ||| || |||| |||||||||||| ||||| |||||| |||||||||||||||||||||||||||||||||||    
T  27864666 atttatgtggggttcagattaccacatgtcagaattttatgtggatgtaaagggtgtattgccacatggggtggtacatgtatcacc 27864752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 33 - 107
Target Start/End: Complemental strand, 55272356 - 55272282
Alignment:
Q  33 ttgccacgtgtcagaattttgtgtgggtgtaaaaggtgtattgccacatggggtggtacatgtatcaccgctcat 107  Q
    ||||||| |||||| ||||||||||||||||| ||||||||||||||||||||  |||||||||||||| |||||    
T  55272356 ttgccacatgtcaggattttgtgtgggtgtaagaggtgtattgccacatgggggtgtacatgtatcaccactcat 55272282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 33 - 106
Target Start/End: Original strand, 712080 - 712153
Alignment:
Q  33 ttgccacgtgtcagaattttgtgtgggtgtaaaaggtgtattgccacatggggtggtacatgtatcaccgctca 106  Q
    ||||||| |||||| ||||||||||||||||| |||||||||||||||||| |  |||||||||||||||||||    
T  712080 ttgccacatgtcaggattttgtgtgggtgtaagaggtgtattgccacatggaggtgtacatgtatcaccgctca 712153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 33 - 101
Target Start/End: Original strand, 19880074 - 19880142
Alignment:
Q  33 ttgccacgtgtcagaattttgtgtgggtgtaaaaggtgtattgccacatggggtggtacatgtatcacc 101  Q
    ||||||| |||||| ||||||||||||||||| ||||||||||||||||||||  ||||||||||||||    
T  19880074 ttgccacatgtcaggattttgtgtgggtgtaagaggtgtattgccacatgggggtgtacatgtatcacc 19880142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 15 - 99
Target Start/End: Complemental strand, 23204776 - 23204692
Alignment:
Q  15 atttgtgtgggatccaggttgccacgtgtcagaattttgtgtgggtgtaaaaggtgtattgccacatggggtggtacatgtatca 99  Q
    |||| |||||| ||||||||||||| |||||||||||| |||||||||||| | | |||||||||||||| |||||| |||||||    
T  23204776 atttatgtggggtccaggttgccacatgtcagaattttatgtgggtgtaaaggatatattgccacatgggatggtacgtgtatca 23204692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 33 - 101
Target Start/End: Original strand, 31681022 - 31681090
Alignment:
Q  33 ttgccacgtgtcagaattttgtgtgggtgtaaaaggtgtattgccacatggggtggtacatgtatcacc 101  Q
    |||||||||||||||||||| ||| |||||||| |||||||||||||||||| || |||||||||||||    
T  31681022 ttgccacgtgtcagaattttatgtaggtgtaaagggtgtattgccacatgggatgctacatgtatcacc 31681090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 15 - 99
Target Start/End: Complemental strand, 43949799 - 43949715
Alignment:
Q  15 atttgtgtgggatccaggttgccacgtgtcagaattttgtgtgggtgtaaaaggtgtattgccacatggggtggtacatgtatca 99  Q
    ||||||| ||||||||   ||||||||||||||||||||| ||||| |||| |||||||||||| || |||||||||||||||||    
T  43949799 atttgtgcgggatccaatatgccacgtgtcagaattttgtatgggtataaagggtgtattgccaaatagggtggtacatgtatca 43949715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 15 - 115
Target Start/End: Complemental strand, 48463448 - 48463348
Alignment:
Q  15 atttgtgtgggatccaggttgccacgtgtcagaattttgtgtgggtgtaaaaggtgtattgccacatggggtggtacatgtatcaccgctcattaaatta 114  Q
    |||| |||||| | ||| || |||| |||||||||||| |||||||||||| ||||||||||||||| | |||||||||||||||||  | |||||||||    
T  48463448 atttatgtggggttcagattaccacatgtcagaattttatgtgggtgtaaagggtgtattgccacatagagtggtacatgtatcaccattaattaaatta 48463349  T
Q  115 a 115  Q
    |    
T  48463348 a 48463348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 15 - 101
Target Start/End: Complemental strand, 56215896 - 56215810
Alignment:
Q  15 atttgtgtgggatccaggttgccacgtgtcagaattttgtgtgggtgtaaaaggtgtattgccacatggggtggtacatgtatcacc 101  Q
    ||||||||||| || ||||||| |  |||||||||||||||||||||||| |||||||| ||||||||| |  ||||||||||||||    
T  56215896 atttgtgtggggtctaggttgctatatgtcagaattttgtgtgggtgtaagaggtgtatggccacatggtggtgtacatgtatcacc 56215810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 33 - 101
Target Start/End: Original strand, 35037125 - 35037192
Alignment:
Q  33 ttgccacgtgtcagaattttgtgtgggtgtaaaaggtgtattgccacatggggtggtacatgtatcacc 101  Q
    ||||||| |||||| ||||||||||||||||| |||||||||||||||||| || ||||||||||||||    
T  35037125 ttgccacatgtcaggattttgtgtgggtgtaagaggtgtattgccacatggagt-gtacatgtatcacc 35037192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 15 - 100
Target Start/End: Original strand, 41848073 - 41848158
Alignment:
Q  15 atttgtgtgggatccaggttgccacgtgtcagaattttgtgtgggtgtaaaaggtgtattgccacatggggtggtacatgtatcac 100  Q
    ||||||||||| | ||| ||| ||| ||||||||||||| |||| |||||  |||||||||||||||||||  |||||||||||||    
T  41848073 atttgtgtggggttcagattgtcacatgtcagaattttgcgtggatgtaaggggtgtattgccacatgggggtgtacatgtatcac 41848158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 33 - 101
Target Start/End: Complemental strand, 17619132 - 17619064
Alignment:
Q  33 ttgccacgtgtcagaattttgtgtgggtgtaaaaggtgtattgccacatggggtggtacatgtatcacc 101  Q
    ||||||| |||||| ||||||||||||||||| |||||||||||||  |||||  ||||||||||||||    
T  17619132 ttgccacatgtcaggattttgtgtgggtgtaagaggtgtattgccaggtggggatgtacatgtatcacc 17619064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 33 - 101
Target Start/End: Complemental strand, 48435559 - 48435491
Alignment:
Q  33 ttgccacgtgtcagaattttgtgtgggtgtaaaaggtgtattgccacatggggtggtacatgtatcacc 101  Q
    ||||||| |||||| ||||||||||||||||| || ||||||| |||||||||  ||||||||||||||    
T  48435559 ttgccacatgtcaggattttgtgtgggtgtaagagatgtattgtcacatgggggtgtacatgtatcacc 48435491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 29 - 99
Target Start/End: Original strand, 21687122 - 21687192
Alignment:
Q  29 caggttgccacgtgtcagaattttgtgtgggtgtaaaaggtgtattgccacatggggtggtacatgtatca 99  Q
    |||||||||||||||||||||||||||||  ||||||   ||||||||||||| || |||||||| |||||    
T  21687122 caggttgccacgtgtcagaattttgtgtgaatgtaaagaatgtattgccacataggttggtacatatatca 21687192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 37 - 87
Target Start/End: Original strand, 39631225 - 39631275
Alignment:
Q  37 cacgtgtcagaattttgtgtgggtgtaaaaggtgtattgccacatggggtg 87  Q
    ||||||||||||||||||||||||||||| | ||||||| |||||||||||    
T  39631225 cacgtgtcagaattttgtgtgggtgtaaaggatgtattgtcacatggggtg 39631275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 27 - 99
Target Start/End: Complemental strand, 27316699 - 27316626
Alignment:
Q  27 tccaggttgccacgtgtcagaa-ttttgtgtgggtgtaaaaggtgtattgccacatggggtggtacatgtatca 99  Q
    |||| ||||||||||||||||| |||||||||| |||||| ||||||||| |||||||| || || ||||||||    
T  27316699 tccaagttgccacgtgtcagaatttttgtgtggatgtaaagggtgtattgtcacatgggatgataaatgtatca 27316626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 33 - 101
Target Start/End: Complemental strand, 46827686 - 46827618
Alignment:
Q  33 ttgccacgtgtcagaattttgtgtgggtgtaaaaggtgtattgccacatggggtggtacatgtatcacc 101  Q
    ||||||| |||||| ||||||||||||||||| || |||||| |||||||| |  ||||||||||||||    
T  46827686 ttgccacatgtcaggattttgtgtgggtgtaagagatgtatttccacatggaggtgtacatgtatcacc 46827618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 15 - 78
Target Start/End: Complemental strand, 41327541 - 41327478
Alignment:
Q  15 atttgtgtgggatccaggttgccacgtgtcagaattttgtgtgggtgtaaaaggtgtattgcca 78  Q
    ||||||||||| ||||||||||||| ||| |||||||| |||| ||||||  ||||||||||||    
T  41327541 atttgtgtggggtccaggttgccacatgttagaattttttgtgagtgtaaggggtgtattgcca 41327478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 15 - 74
Target Start/End: Original strand, 41878508 - 41878567
Alignment:
Q  15 atttgtgtgggatccaggttgccacgtgtcagaattttgtgtgggtgtaaaaggtgtatt 74  Q
    ||||||||||| ||||| ||| |||||||||||||||||||| ||||||||  |||||||    
T  41878508 atttgtgtggggtccagattgtcacgtgtcagaattttgtgttggtgtaaagagtgtatt 41878567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 15 - 101
Target Start/End: Original strand, 28988575 - 28988660
Alignment:
Q  15 atttgtgtgggatccaggttgccacgtgtcagaattttgtgtgggtgtaaaaggtgtattgccacatggggtggtacatgtatcacc 101  Q
    ||||||||||| ||||||||||||  |||||||||||||| || | ||||  ||||||||| |||||| ||  ||||||||||||||    
T  28988575 atttgtgtggggtccaggttgccatatgtcagaattttgtatgag-gtaaggggtgtattgtcacatgagggtgtacatgtatcacc 28988660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 48 - 101
Target Start/End: Original strand, 32728492 - 32728545
Alignment:
Q  48 attttgtgtgggtgtaaaaggtgtattgccacatggggtggtacatgtatcacc 101  Q
    ||||| |||| |||||| ||||||||||||||||||||  ||||||||||||||    
T  32728492 attttttgtgcgtgtaagaggtgtattgccacatgggggtgtacatgtatcacc 32728545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 57 - 101
Target Start/End: Complemental strand, 960799 - 960755
Alignment:
Q  57 gggtgtaaaaggtgtattgccacatggggtggtacatgtatcacc 101  Q
    |||||||| ||||||||||||||||||||  ||||||||||||||    
T  960799 gggtgtaagaggtgtattgccacatgggggtgtacatgtatcacc 960755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 33 - 81
Target Start/End: Complemental strand, 960850 - 960802
Alignment:
Q  33 ttgccacgtgtcagaattttgtgtgggtgtaaaaggtgtattgccacat 81  Q
    ||||||| |||||| ||||||||||||||||| |||||||||| |||||    
T  960850 ttgccacatgtcaggattttgtgtgggtgtaagaggtgtattgtcacat 960802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 33 - 101
Target Start/End: Complemental strand, 3756232 - 3756164
Alignment:
Q  33 ttgccacgtgtcagaattttgtgtgggtgtaaaaggtgtattgccacatggggtggtacatgtatcacc 101  Q
    ||||||| |||||  ||||| ||||||||||| || ||||||||||||||||   ||||||||||||||    
T  3756232 ttgccacatgtcatgattttatgtgggtgtaagagttgtattgccacatgggagtgtacatgtatcacc 3756164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 33 - 93
Target Start/End: Complemental strand, 46412449 - 46412389
Alignment:
Q  33 ttgccacgtgtcagaattttgtgtgggtgtaaaaggtgtattgccacatggggtggtacat 93  Q
    |||||||||||||||||||||||| | ||||||| || ||||| || || |||||||||||    
T  46412449 ttgccacgtgtcagaattttgtgtagatgtaaaaagtatattgtcatatagggtggtacat 46412389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 33 - 82
Target Start/End: Original strand, 38851633 - 38851682
Alignment:
Q  33 ttgccacgtgtcagaattttgtgtgggtgtaaaaggtgtattgccacatg 82  Q
    ||||||| |||||| ||||||||||| ||||| || ||||||||||||||    
T  38851633 ttgccacatgtcaggattttgtgtggatgtaagagatgtattgccacatg 38851682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 36 - 79
Target Start/End: Original strand, 50526201 - 50526245
Alignment:
Q  36 ccacgtgtcagaattttgtgtgggtgt-aaaaggtgtattgccac 79  Q
    |||||||||||| |||||||||||||| ||| |||||||||||||    
T  50526201 ccacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccac 50526245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0119 (Bit Score: 71; Significance: 6e-32; HSPs: 1)
Name: scaffold0119
Description:

Target: scaffold0119; HSP #1
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 15 - 105
Target Start/End: Original strand, 787 - 877
Alignment:
Q  15 atttgtgtgggatccaggttgccacgtgtcagaattttgtgtgggtgtaaaaggtgtattgccacatggggtggtacatgtatcaccgctc 105  Q
    ||||||||||  ||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||| |||||||||||    
T  787 atttgtgtggagtccaggttgccacgtgtcagaattttgtgtgggtgtaaagggtgtattgccacatgaggtggtacatatatcaccgctc 877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 70; Significance: 2e-31; HSPs: 29)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 15 - 108
Target Start/End: Complemental strand, 48498960 - 48498867
Alignment:
Q  15 atttgtgtgggatccaggttgccacgtgtcagaattttgtgtgggtgtaaaaggtgtattgccacatggggtggtacatgtatcaccgctcatt 108  Q
    ||||||||||| |||| ||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||| | ||||||    
T  48498960 atttgtgtggggtccaagttgccacgtgtcagaattttatgtgggtgtaaagggtgtattgccacatggggtggtacatgtatcatcactcatt 48498867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 15 - 99
Target Start/End: Original strand, 5489878 - 5489962
Alignment:
Q  15 atttgtgtgggatccaggttgccacgtgtcagaattttgtgtgggtgtaaaaggtgtattgccacatggggtggtacatgtatca 99  Q
    ||||||||||| |||| ||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||    
T  5489878 atttgtgtggggtccaagttgccacgtgtcagaattttatgtgggtgtaaagggtgtattgccacatggggtggtacatgtatca 5489962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 15 - 99
Target Start/End: Complemental strand, 50448258 - 50448174
Alignment:
Q  15 atttgtgtgggatccaggttgccacgtgtcagaattttgtgtgggtgtaaaaggtgtattgccacatggggtggtacatgtatca 99  Q
    |||| |||||| |||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  50448258 atttttgtgggttccatgttgccacgtgtcagaattttgtgtgggtgtaaagggtgtattgccacatggggtggtacatgtatca 50448174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 15 - 99
Target Start/End: Complemental strand, 750303 - 750219
Alignment:
Q  15 atttgtgtgggatccaggttgccacgtgtcagaattttgtgtgggtgtaaaaggtgtattgccacatggggtggtacatgtatca 99  Q
    ||||||||||| |||| ||| |||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||    
T  750303 atttgtgtggggtccatgttaccacgtgtcagaattttgtgtgggtgtaaagggtgtattgccacatgggatggtacatgtatca 750219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 15 - 99
Target Start/End: Original strand, 7447927 - 7448011
Alignment:
Q  15 atttgtgtgggatccaggttgccacgtgtcagaattttgtgtgggtgtaaaaggtgtattgccacatggggtggtacatgtatca 99  Q
    ||||||||||| |||| |||||||||||||||||||||||||||||||||| |||||||||||||||||  ||||||||||||||    
T  7447927 atttgtgtggggtccaagttgccacgtgtcagaattttgtgtgggtgtaaagggtgtattgccacatggaatggtacatgtatca 7448011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 15 - 99
Target Start/End: Complemental strand, 24769497 - 24769413
Alignment:
Q  15 atttgtgtgggatccaggttgccacgtgtcagaattttgtgtgggtgtaaaaggtgtattgccacatggggtggtacatgtatca 99  Q
    ||||||||||| |||| ||||||||||||||||||||||||||| ||||||  ||||||||||||||||||||||||||||||||    
T  24769497 atttgtgtggggtccaagttgccacgtgtcagaattttgtgtggatgtaaagagtgtattgccacatggggtggtacatgtatca 24769413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 15 - 99
Target Start/End: Complemental strand, 43571084 - 43571000
Alignment:
Q  15 atttgtgtgggatccaggttgccacgtgtcagaattttgtgtgggtgtaaaaggtgtattgccacatggggtggtacatgtatca 99  Q
    ||||||||||| |||| ||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||| |||||    
T  43571084 atttgtgtggggtccaagttgccacgtgtcagaattttatgtgggtgtaaagggtgtattgccacatggggtggtacatatatca 43571000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 15 - 101
Target Start/End: Complemental strand, 23989521 - 23989435
Alignment:
Q  15 atttgtgtgggatccaggttgccacgtgtcagaattttgtgtgggtgtaaaaggtgtattgccacatggggtggtacatgtatcacc 101  Q
    ||||||||||| ||||||||||||| ||||||||| ||||||||||||||| |||||||||||| || |||||||||||||||||||    
T  23989521 atttgtgtggggtccaggttgccacatgtcagaatcttgtgtgggtgtaaagggtgtattgccatatagggtggtacatgtatcacc 23989435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 15 - 99
Target Start/End: Original strand, 4401430 - 4401514
Alignment:
Q  15 atttgtgtgggatccaggttgccacgtgtcagaattttgtgtgggtgtaaaaggtgtattgccacatggggtggtacatgtatca 99  Q
    ||||||||||| ||||   |||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||    
T  4401430 atttgtgtggggtccaatatgccacgtgtcagaattttgtgtgggtgtaaagggtgtattgccacatagggtggtacatgtatca 4401514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 15 - 101
Target Start/End: Complemental strand, 2497560 - 2497474
Alignment:
Q  15 atttgtgtgggatccaggttgccacgtgtcagaattttgtgtgggtgtaaaaggtgtattgccacatggggtggtacatgtatcacc 101  Q
    |||| |||||||||||| ||| |||||||||||||||| ||||||| |||| ||||||||||||||||| |||||||||||||||||    
T  2497560 atttatgtgggatccagattgtcacgtgtcagaattttatgtgggtataaagggtgtattgccacatggtgtggtacatgtatcacc 2497474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 15 - 101
Target Start/End: Original strand, 37814880 - 37814966
Alignment:
Q  15 atttgtgtgggatccaggttgccacgtgtcagaattttgtgtgggtgtaaaaggtgtattgccacatggggtggtacatgtatcacc 101  Q
    |||| |||||| ||||| |||||||||||||||||||| | ||| |||||| |||||||||||||||||||||||||||||||||||    
T  37814880 atttatgtggggtccagattgccacgtgtcagaattttatatggatgtaaagggtgtattgccacatggggtggtacatgtatcacc 37814966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 33 - 101
Target Start/End: Original strand, 35003414 - 35003482
Alignment:
Q  33 ttgccacgtgtcagaattttgtgtgggtgtaaaaggtgtattgccacatggggtggtacatgtatcacc 101  Q
    ||||||| |||||| ||||||||||||||||| ||||||||||||||||||||  || |||||||||||    
T  35003414 ttgccacatgtcaggattttgtgtgggtgtaagaggtgtattgccacatgggggtgtgcatgtatcacc 35003482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 33 - 101
Target Start/End: Original strand, 44112797 - 44112865
Alignment:
Q  33 ttgccacgtgtcagaattttgtgtgggtgtaaaaggtgtattgccacatggggtggtacatgtatcacc 101  Q
    ||||||| |||||||||||||||||||||||| |||||||||||||||||  |  ||||||||||||||    
T  44112797 ttgccacatgtcagaattttgtgtgggtgtaagaggtgtattgccacatgaaggtgtacatgtatcacc 44112865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 33 - 101
Target Start/End: Original strand, 45705945 - 45706013
Alignment:
Q  33 ttgccacgtgtcagaattttgtgtgggtgtaaaaggtgtattgccacatggggtggtacatgtatcacc 101  Q
    ||||||| |||||| ||||||||||||||||| |||||||||||||||||| |  ||||||||||||||    
T  45705945 ttgccacatgtcaggattttgtgtgggtgtaagaggtgtattgccacatggaggtgtacatgtatcacc 45706013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 33 - 101
Target Start/End: Original strand, 48119748 - 48119816
Alignment:
Q  33 ttgccacgtgtcagaattttgtgtgggtgtaaaaggtgtattgccacatggggtggtacatgtatcacc 101  Q
    ||||||| |||||| ||||||||||||||||| |||||||||||||| |||||  ||||||||||||||    
T  48119748 ttgccacatgtcaggattttgtgtgggtgtaagaggtgtattgccacgtgggggtgtacatgtatcacc 48119816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 33 - 107
Target Start/End: Complemental strand, 45639712 - 45639638
Alignment:
Q  33 ttgccacgtgtcagaattttgtgtgggtgtaaaaggtgtattgccacatggggtggtacatgtatcaccgctcat 107  Q
    ||||||| ||| || ||||||||||||||||| ||||||||||||||| ||||  |||||||||||||| |||||    
T  45639712 ttgccacatgttaggattttgtgtgggtgtaagaggtgtattgccacaagggggtgtacatgtatcaccactcat 45639638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 33 - 106
Target Start/End: Complemental strand, 35000093 - 35000020
Alignment:
Q  33 ttgccacgtgtcagaattttgtgtgggtgtaaaaggtgtattgccacatggggtggtacatgtatcaccgctca 106  Q
    ||||||| |||||| ||||||| ||||||||| || |||||||||||||||||  |||||||||||||| ||||    
T  35000093 ttgccacatgtcaggattttgtatgggtgtaagagatgtattgccacatgggggtgtacatgtatcaccactca 35000020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 33 - 115
Target Start/End: Complemental strand, 38113175 - 38113093
Alignment:
Q  33 ttgccacgtgtcagaattttgtgtgggtgtaaaaggtgtattgccacatggggtggtacatgtatcaccgctcattaaattaa 115  Q
    ||||||| |||||| ||||||||||||||||| |||||||||| ||||||| |  ||||||| |||||| ||| || ||||||    
T  38113175 ttgccacatgtcaggattttgtgtgggtgtaagaggtgtattgtcacatggaggtgtacatgaatcaccactcttttaattaa 38113093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 36 - 101
Target Start/End: Complemental strand, 45427722 - 45427657
Alignment:
Q  36 ccacgtgtcagaattttgtgtgggtgtaaaaggtgtattgccacatggggtggtacatgtatcacc 101  Q
    |||| |||||| ||||||||||| || || ||||||||||||||||||||  ||||||||||||||    
T  45427722 ccacatgtcaggattttgtgtggatggaagaggtgtattgccacatggggatgtacatgtatcacc 45427657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 15 - 99
Target Start/End: Original strand, 4888145 - 4888228
Alignment:
Q  15 atttgtgtgggatccaggttgccacgtgtcagaattttgtgtgggtgtaaaaggtgtattgccacatggggtggtacatgtatca 99  Q
    ||||||||||  ||||  |||||| || |||||||||||||||| |||||| | | ||||||||||| |||||||||||||||||    
T  4888145 atttgtgtggtgtccaaattgccatgtatcagaattttgtgtggatgtaaaggatatattgccacat-gggtggtacatgtatca 4888228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 33 - 101
Target Start/End: Original strand, 26585582 - 26585650
Alignment:
Q  33 ttgccacgtgtcagaattttgtgtgggtgtaaaaggtgtattgccacatggggtggtacatgtatcacc 101  Q
    ||||||| |||||| ||||||||||| ||||| || ||||||||| |||||||  ||||||||||||||    
T  26585582 ttgccacatgtcaggattttgtgtggatgtaagagatgtattgccgcatgggggtgtacatgtatcacc 26585650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 33 - 101
Target Start/End: Original strand, 41065271 - 41065339
Alignment:
Q  33 ttgccacgtgtcagaattttgtgtgggtgtaaaaggtgtattgccacatggggtggtacatgtatcacc 101  Q
    ||||||| |||||| |||||||| || ||||| ||||||||||||||||||||  |||||| |||||||    
T  41065271 ttgccacatgtcaggattttgtgcggatgtaagaggtgtattgccacatgggggtgtacatatatcacc 41065339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 33 - 85
Target Start/End: Original strand, 46168503 - 46168555
Alignment:
Q  33 ttgccacgtgtcagaattttgtgtgggtgtaaaaggtgtattgccacatgggg 85  Q
    ||||||| ||||| |||||||||||||||||| || |||||||||||||||||    
T  46168503 ttgccacatgtcataattttgtgtgggtgtaagagatgtattgccacatgggg 46168555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 38 - 79
Target Start/End: Original strand, 27564767 - 27564809
Alignment:
Q  38 acgtgtcagaattttgtgtgggtgt-aaaaggtgtattgccac 79  Q
    |||||||||| |||||||||||||| |||||||||||||||||    
T  27564767 acgtgtcagatttttgtgtgggtgtcaaaaggtgtattgccac 27564809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 23 - 68
Target Start/End: Complemental strand, 26440817 - 26440772
Alignment:
Q  23 gggatccaggttgccacgtgtcagaattttgtgtgggtgtaaaagg 68  Q
    |||||||| || ||||||||||||| |||||||||||||| |||||    
T  26440817 gggatccatgtggccacgtgtcagatttttgtgtgggtgttaaagg 26440772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 23 - 79
Target Start/End: Original strand, 37926455 - 37926512
Alignment:
Q  23 gggatccaggttgccacgtgtcagaattttgtgtgggtg-taaaaggtgtattgccac 79  Q
    |||||||| || ||||||||||||| |||| |||||||| |||||| |||||||||||    
T  37926455 gggatccatgtggccacgtgtcagatttttatgtgggtgttaaaagatgtattgccac 37926512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 36 - 79
Target Start/End: Complemental strand, 32813317 - 32813273
Alignment:
Q  36 ccacgtgtcagaattttgtgtgggtg-taaaaggtgtattgccac 79  Q
    |||||||||||| ||||||||||||| |||| |||||||||||||    
T  32813317 ccacgtgtcagatttttgtgtgggtgttaaagggtgtattgccac 32813273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 36 - 79
Target Start/End: Complemental strand, 37649268 - 37649224
Alignment:
Q  36 ccacgtgtcagaattttgtgtgggtgtaaaag-gtgtattgccac 79  Q
    |||||||||||| |||||||||||||| |||| ||||||||||||    
T  37649268 ccacgtgtcagatttttgtgtgggtgtcaaagagtgtattgccac 37649224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 33 - 101
Target Start/End: Original strand, 38336038 - 38336106
Alignment:
Q  33 ttgccacgtgtcagaattttgtgtgggtgtaaaaggtgtattgccacatggggtggtacatgtatcacc 101  Q
    ||||||| |||||| ||||||||||  | ||| |||||||||||||||| |||  ||||| ||||||||    
T  38336038 ttgccacatgtcaggattttgtgtgaatataagaggtgtattgccacataggggtgtacaagtatcacc 38336106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0187 (Bit Score: 69; Significance: 1e-30; HSPs: 2)
Name: scaffold0187
Description:

Target: scaffold0187; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 15 - 99
Target Start/End: Complemental strand, 14186 - 14103
Alignment:
Q  15 atttgtgtgggatccaggttgccacgtgtcagaattttgtgtgggtgtaaaaggtgtattgccacatggggtggtacatgtatca 99  Q
    ||||||||||| |||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||    
T  14186 atttgtgtggg-tccaggttgccacgtgtcagaattttgtgtggatgtaaagggtgtattgccacatggggtggtacatgtatca 14103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0187; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 15 - 99
Target Start/End: Complemental strand, 24514 - 24431
Alignment:
Q  15 atttgtgtgggatccaggttgccacgtgtcagaattttgtgtgggtgtaaaaggtgtattgccacatggggtggtacatgtatca 99  Q
    ||||||||||| |||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||    
T  24514 atttgtgtggg-tccaggttgccacgtgtcagaattttgtgtggatgtaaagggtgtattgccacatggggtggtacatgtatca 24431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 15 - 99
Target Start/End: Original strand, 112757 - 112841
Alignment:
Q  15 atttgtgtgggatccaggttgccacgtgtcagaattttgtgtgggtgtaaaaggtgtattgccacatggggtggtacatgtatca 99  Q
    ||||||||||| ||||| ||||||||||||| |||||||| |||||||||| |||||||||||||||||||||||||||||||||    
T  112757 atttgtgtggggtccagattgccacgtgtcaaaattttgtatgggtgtaaagggtgtattgccacatggggtggtacatgtatca 112841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0385 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: scaffold0385
Description:

Target: scaffold0385; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 20 - 99
Target Start/End: Original strand, 11358 - 11437
Alignment:
Q  20 tgtgggatccaggttgccacgtgtcagaattttgtgtgggtgtaaaaggtgtattgccacatggggtggtacatgtatca 99  Q
    |||||| |||| ||||| ||||||||||||||||||| ||||||||  ||||||||||||||||| ||||||||||||||    
T  11358 tgtggggtccaagttgctacgtgtcagaattttgtgtaggtgtaaatagtgtattgccacatgggatggtacatgtatca 11437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0157 (Bit Score: 51; Significance: 5e-20; HSPs: 1)
Name: scaffold0157
Description:

Target: scaffold0157; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 33 - 99
Target Start/End: Complemental strand, 23401 - 23335
Alignment:
Q  33 ttgccacgtgtcagaattttgtgtgggtgtaaaaggtgtattgccacatggggtggtacatgtatca 99  Q
    ||||||||||| |||||||||||||||||||||| |||||||| ||||||||||||| |||||||||    
T  23401 ttgccacgtgttagaattttgtgtgggtgtaaaacgtgtattgtcacatggggtggtgcatgtatca 23335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 33 - 101
Target Start/End: Complemental strand, 45699 - 45631
Alignment:
Q  33 ttgccacgtgtcagaattttgtgtgggtgtaaaaggtgtattgccacatggggtggtacatgtatcacc 101  Q
    ||||||| |||||| ||||| ||||||||||| |||||||||||||||||||   ||||||||||||||    
T  45699 ttgccacatgtcaggattttatgtgggtgtaagaggtgtattgccacatgggtgtgtacatgtatcacc 45631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0100 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: scaffold0100
Description:

Target: scaffold0100; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 48 - 99
Target Start/End: Complemental strand, 35421 - 35370
Alignment:
Q  48 attttgtgtgggtgtaaaaggtgtattgccacatggggtggtacatgtatca 99  Q
    ||||||| ||||||||| ||||||||||||||||||||  ||||||||||||    
T  35421 attttgtatgggtgtaagaggtgtattgccacatgggggtgtacatgtatca 35370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0237 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0237
Description:

Target: scaffold0237; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 38 - 78
Target Start/End: Complemental strand, 4097 - 4056
Alignment:
Q  38 acgtgtcagaattttgtgtgggtg-taaaaggtgtattgcca 78  Q
    |||||||||| ||||||||||||| |||||||||||||||||    
T  4097 acgtgtcagatttttgtgtgggtgttaaaaggtgtattgcca 4056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University