View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6431_low_5 (Length: 468)

Name: NF6431_low_5
Description: NF6431
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6431_low_5
NF6431_low_5
[»] chr3 (3 HSPs)
chr3 (8-448)||(52721298-52721738)
chr3 (8-448)||(52712477-52712917)
chr3 (8-388)||(52698658-52699038)


Alignment Details
Target: chr3 (Bit Score: 421; Significance: 0; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 421; E-Value: 0
Query Start/End: Original strand, 8 - 448
Target Start/End: Original strand, 52721298 - 52721738
Alignment:
Q  8 cgagtgagatgaaaaagaagtccaacagaaatacgctttctttaattggtttttctttgctatcaacttgggttctcttcttggaatcacgatattggtt 107  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  52721298 cgagggagatgaaaaagaagtccaacagaaatacgctttctttaattggtttttctttgctatcaacatgggttctcttcttggaatcacgatattggtt 52721397  T
Q  108 tatgcacaagataaactagggtggggttggggtgttggaatacccacaataactatggttttatctatcgttcttctagctgctggtgttcggtattacc 207  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52721398 tatgcacaagataaactagggtggggttggggttttggaatacccacaataactatggttttatctatcgttcttctagctgctggtgttcggtattacc 52721497  T
Q  208 gttttcaaaagccaatgggaagcccttttactaggtttcttcaggttattgtagcctccgtcaagaaacatcgaaaaggagtttcggtagaaaatgaacc 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  52721498 gttttcaaaagccaatgggaagcccttttactaggtttcttcaggttattgtagcctccgtcaagaaacatcgaaaaggagtttccgtagaaaatgaacc 52721597  T
Q  308 tactctctatgaggttgagaccacacactctgatattattggcgctcgcaagcttcctcacacacgacaatacaggttagttaataaatcagggatattt 407  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52721598 tactctctatgaggttgagaccacacactctgatattattggcgctcgcaagcttcctcacacacgacaatacaggttagttaataaatcagggatattt 52721697  T
Q  408 ttcttccaacaaataaataaatcagtgatcaaatgcactta 448  Q
    ||||||||| |||||||||||||||||||||||||||||||    
T  52721698 ttcttccaaaaaataaataaatcagtgatcaaatgcactta 52721738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 8 - 448
Target Start/End: Original strand, 52712477 - 52712917
Alignment:
Q  8 cgagtgagatgaaaaagaagtccaacagaaatacgctttctttaattggtttttctttgctatcaacttgggttctcttcttggaatcacgatattggtt 107  Q
    |||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||    
T  52712477 cgagggagatgaaaaagaagtccaaaagaaatacgctttctttaattggtttttctttgctatcaacatgggtgctcttcttggaatcacgatattggtt 52712576  T
Q  108 tatgcacaagataaactagggtggggttggggtgttggaatacccacaataactatggttttatctatcgttcttctagctgctggtgttcggtattacc 207  Q
    ||||||||||||||||||||||||||||||||| ||||||| ||||||||||||| |||||||||||||||| |||||||||| ||||||||||||||||    
T  52712577 tatgcacaagataaactagggtggggttggggttttggaattcccacaataactacggttttatctatcgttgttctagctgccggtgttcggtattacc 52712676  T
Q  208 gttttcaaaagccaatgggaagcccttttactaggtttcttcaggttattgtagcctccgtcaagaaacatcgaaaaggagtttcggtagaaaatgaacc 307  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||| || ||||||||||| ||    
T  52712677 gtttccaaaagccaatgggaagcccttttactaggtttcttcaggttattgtagcctccgtcaagaaacatcaaagaggagtctccgtagaaaatgagcc 52712776  T
Q  308 tactctctatgaggttgagaccacacactctgatattattggcgctcgcaagcttcctcacacacgacaatacaggttagttaataaatcagggatattt 407  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||     
T  52712777 tactctctacgaggttgagaccacacactctgatattattggcgctcgcaagcttcctcacacacgacaatacaggttagttaataaatcagggattttg 52712876  T
Q  408 ttcttccaacaaataaataaatcagtgatcaaatgcactta 448  Q
    ||||| ||| |||||||||||||||||||||||||||||||    
T  52712877 ttctttcaaaaaataaataaatcagtgatcaaatgcactta 52712917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 8 - 388
Target Start/End: Original strand, 52698658 - 52699038
Alignment:
Q  8 cgagtgagatgaaaaagaagtccaacagaaatacgctttctttaattggtttttctttgctatcaacttgggttctcttcttggaatcacgatattggtt 107  Q
    |||| ||||||||||||||||||||  ||||| | |||||||||||||||||| |||||| |||||| ||||| | ||||||||||| ||  ||||||||    
T  52698658 cgagggagatgaaaaagaagtccaaatgaaattctctttctttaattggttttactttgccatcaacatgggtgcccttcttggaattacactattggtt 52698757  T
Q  108 tatgcacaagataaactagggtggggttggggtgttggaatacccacaataactatggttttatctatcgttcttctagctgctggtgttcggtattacc 207  Q
    |||  |||| |  || |||||||| |||||||| ||| | ||||||||||||||| | || ||||||||||| |  | || | |||| ||| |||||| |    
T  52698758 tatttacaaaaccaagtagggtggagttggggttttgcattacccacaataactacgattatatctatcgttatcttggccgttggtattccgtattatc 52698857  T
Q  208 gttttcaaaagccaatgggaagcccttttactaggtttcttcaggttattgtagcctccgtcaagaaacatcgaaaaggagtttcggtagaaaatgaacc 307  Q
    |||||||||| |||||||||||||| || |||||||||||||||||||||||||| ||  | ||||||||||||  |||||| || |||||||||||| |    
T  52698858 gttttcaaaaaccaatgggaagcccattcactaggtttcttcaggttattgtagcttctataaagaaacatcgaggaggagtctcagtagaaaatgaaac 52698957  T
Q  308 tactctctatgaggttgagaccacacactctgatattattggcgctcgcaagcttcctcacacacgacaatacaggttagt 388  Q
    | |||||||||||||||| |||||| |||||||||||||||| |||||||||||||| ||||| |  ||||||||||||||    
T  52698958 tcctctctatgaggttgaaaccacatactctgatattattggtgctcgcaagcttccccacactctccaatacaggttagt 52699038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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