View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6431_low_9 (Length: 332)
Name: NF6431_low_9
Description: NF6431
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6431_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 241; Significance: 1e-133; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 19 - 321
Target Start/End: Complemental strand, 11344847 - 11344543
Alignment:
| Q |
19 |
ccaacatccctttcacttacatctccgccaactgtttcgcgggctactttgccggtaacctctctcaaatgggaacactctttcctccacgagacaaggt |
118 |
Q |
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| T |
11344847 |
ccaaaatccctttcacttacatctccgccaactgtttcgcgggctactttgccggcaacctctctcaaatgggaacactctttccaccacgagacaaggt |
11344748 |
T |
|
| Q |
119 |
tgttctctatggcgacggtaatgtcaaaggtgcgtaaaatcctagaaaaattagtt-aca-nnnnnnnngctaatgtctgctagaacacacaaatattaa |
216 |
Q |
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| T |
11344747 |
tgttctctatggcgacggtaatgtcaagggtacgtaaaatcctagaaaaattagttaacatttttttttgctaatgtctgctagaacacacaaatattaa |
11344648 |
T |
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| Q |
217 |
tcttagaatttacacaataagatatatgaggtatacatgtttgtggcagttgtttatgtggatgaagatgatgttgcaacatacacaattaagacaattg |
316 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
11344647 |
tcttagaatttacacaataagatatatgaggtatacatgtttgtggcagttgtttatatggatgaagatgatgttgcaacatacacaattaagacaattg |
11344548 |
T |
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| Q |
317 |
atgat |
321 |
Q |
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||||| |
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| T |
11344547 |
atgat |
11344543 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 119; E-Value: 9e-61
Query Start/End: Original strand, 19 - 157
Target Start/End: Complemental strand, 11308732 - 11308594
Alignment:
| Q |
19 |
ccaacatccctttcacttacatctccgccaactgtttcgcgggctactttgccggtaacctctctcaaatgggaacactctttcctccacgagacaaggt |
118 |
Q |
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| T |
11308732 |
ccaacatccctttcacttacatctccgccaactgtttcgcggcctacttcgccggtaacctctctcaaatgggaacactctttcctccacgagacaaggt |
11308633 |
T |
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| Q |
119 |
tgttctctatggcgacggtaatgtcaaaggtgcgtaaaa |
157 |
Q |
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| T |
11308632 |
tgttctctatggtgacggcaatgtcaaaggtacgtaaaa |
11308594 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 203 - 321
Target Start/End: Complemental strand, 11308539 - 11308416
Alignment:
| Q |
203 |
cacacaaatattaatcttagaatttacacaataagatatatga-----ggtatacatgtttgtggcagttgtttatgtggatgaagatgatgttgcaaca |
297 |
Q |
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|||| ||||||||||||||||| |||||||||||||||||||| ||| ||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
11308539 |
cacaaaaatattaatcttagaacttacacaataagatatatgatatgaggtgcacatgtttgtggcagttgtttatatggatgaagatgatgttgcaaca |
11308440 |
T |
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| Q |
298 |
tacacaattaagacaattgatgat |
321 |
Q |
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| T |
11308439 |
tacacaattaagacaattgatgat |
11308416 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 277 - 321
Target Start/End: Complemental strand, 30181419 - 30181375
Alignment:
| Q |
277 |
gatgaagatgatgttgcaacatacacaattaagacaattgatgat |
321 |
Q |
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| T |
30181419 |
gatgaatatgatgttgcaacatatacaatcaagacaatagatgat |
30181375 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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