View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6432_high_6 (Length: 236)
Name: NF6432_high_6
Description: NF6432
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6432_high_6 |
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| [»] chr6 (4 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 194; Significance: 1e-105; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 15 - 236
Target Start/End: Complemental strand, 8235163 - 8234942
Alignment:
| Q |
15 |
aacataaaccgcgtgcatgaaattattttaggacctacacgaagaataaaaataaattagtaactaaacgttcgtgtaggaaaacattgggtggaaaaca |
114 |
Q |
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| T |
8235163 |
aacataaaccgcgtgcataaaattattttaggacctagacgaagaataaaaataaattagtaactaaacgttcgtgtaggaaaacattgggtggaaaaga |
8235064 |
T |
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| Q |
115 |
tctcccataaaaaatttagcaccgaattcgaatacaagatctttgataaagcttgaaaagaactcttacgatctcattctatgatcttggatttattttt |
214 |
Q |
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| T |
8235063 |
tctcccttaaaaaatttagcaccgaattcgaacacaagatctttgataaagcttgaaaagaactcttacaatctcattctatgatcttggatttattttt |
8234964 |
T |
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| Q |
215 |
ggtcatgtaatttattgtttac |
236 |
Q |
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| T |
8234963 |
ggtcatgtaattcattgtttac |
8234942 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 15 - 214
Target Start/End: Complemental strand, 8224753 - 8224548
Alignment:
| Q |
15 |
aacataaaccgcgtgcatgaaattattttaggacctacacgaagaataaaa-ataaattagtaactaaacgtt-----cgtgtaggaaaacattgggtgg |
108 |
Q |
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| T |
8224753 |
aacataaaccgcatgcatgaaagtattttaggacctacaagaagaataaaataaaaattagtaactaaacattcgagccgggtaggaatgcattaggtag |
8224654 |
T |
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| Q |
109 |
aaaacatctcccataaaaaatttagcaccgaattcgaatacaagatctttgataaagcttgaaaagaactcttacgatctcattctatgatcttggattt |
208 |
Q |
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| T |
8224653 |
aaacaatctcctttaaaaattttaacagcaaattcaaacacataatctctgataaagcttaaaaagaactctcacaatctcattctatgctcttggattt |
8224554 |
T |
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| Q |
209 |
attttt |
214 |
Q |
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||||| |
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| T |
8224553 |
tttttt |
8224548 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 30 - 88
Target Start/End: Complemental strand, 8213290 - 8213232
Alignment:
| Q |
30 |
catgaaattattttaggacctacacgaagaataaaaataaattagtaactaaacgttcg |
88 |
Q |
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| T |
8213290 |
catgaaagtattttaggacctacaagaagaataaaaataaattaataactaaacattcg |
8213232 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 149 - 236
Target Start/End: Complemental strand, 8213135 - 8213050
Alignment:
| Q |
149 |
caagatctttgataaagcttgaaaagaactcttacgatctcattctatgatcttggatttatttttggtcatgtaatttattgtttac |
236 |
Q |
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| T |
8213135 |
caagatctctgataaagcttaaaaagaactcttaaaatctcattctaagctcttgga--tattttttgtcatgtaagttatagtttac |
8213050 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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