View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6432_low_2 (Length: 393)

Name: NF6432_low_2
Description: NF6432
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6432_low_2
NF6432_low_2
[»] chr6 (6 HSPs)
chr6 (10-393)||(8234429-8234812)
chr6 (74-358)||(18971309-18971593)
chr6 (67-358)||(24395032-24395323)
chr6 (157-216)||(8770789-8770848)
chr6 (154-209)||(16478405-16478460)
chr6 (154-209)||(18488941-18488996)
[»] chr5 (4 HSPs)
chr5 (12-393)||(41777253-41777640)
chr5 (99-219)||(29812875-29812995)
chr5 (154-210)||(20252316-20252372)
chr5 (154-209)||(21824450-21824505)
[»] chr4 (9 HSPs)
chr4 (10-393)||(39983879-39984258)
chr4 (165-338)||(42252544-42252717)
chr4 (99-214)||(41147327-41147442)
chr4 (124-203)||(42397482-42397561)
chr4 (156-220)||(12377494-12377558)
chr4 (73-141)||(21141210-21141278)
chr4 (152-185)||(19498002-19498035)
chr4 (154-199)||(39867550-39867595)
chr4 (127-220)||(55431692-55431785)
[»] chr1 (4 HSPs)
chr1 (61-392)||(19579507-19579838)
chr1 (156-218)||(14794715-14794777)
chr1 (156-214)||(23027966-23028024)
chr1 (172-220)||(48241720-48241768)
[»] chr8 (6 HSPs)
chr8 (51-295)||(15863763-15864007)
chr8 (61-182)||(38921610-38921731)
chr8 (157-218)||(3773691-3773752)
chr8 (157-214)||(16975025-16975082)
chr8 (157-218)||(13448831-13448892)
chr8 (156-220)||(42452470-42452534)
[»] chr2 (5 HSPs)
chr2 (29-205)||(29648310-29648487)
chr2 (157-220)||(355718-355781)
chr2 (156-220)||(40368985-40369049)
chr2 (103-141)||(28543054-28543092)
chr2 (156-213)||(20213809-20213866)
[»] scaffold0074 (1 HSPs)
scaffold0074 (67-358)||(25119-25410)
[»] chr3 (6 HSPs)
chr3 (125-241)||(21736830-21736946)
chr3 (152-191)||(18378308-18378347)
chr3 (88-185)||(36731087-36731184)
chr3 (154-218)||(35273346-35273410)
chr3 (157-213)||(33335580-33335636)
chr3 (124-212)||(53505066-53505154)
[»] chr7 (5 HSPs)
chr7 (156-214)||(48778350-48778408)
chr7 (124-210)||(22359463-22359549)
chr7 (159-220)||(6800209-6800270)
chr7 (152-185)||(31396054-31396087)
chr7 (130-218)||(35782236-35782324)
[»] scaffold0259 (1 HSPs)
scaffold0259 (103-182)||(3586-3665)


Alignment Details
Target: chr6 (Bit Score: 320; Significance: 1e-180; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 10 - 393
Target Start/End: Original strand, 8234429 - 8234812
Alignment:
Q  10 acatcatcaacctgagacctttcagccatggcgcctgtgtcaaaacggtatgctgctttcacagaatacccttgaatcgggtctaacgtccacctccaag 109  Q
    |||||||||||||||||||||||||| ||||| | ||||| |||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||    
T  8234429 acatcatcaacctgagacctttcagctatggcacttgtgttaaaacggtatgctgctttcacataatacccttgaaccgggtctaacgtccacctccaag 8234528  T
Q  110 agtcatgaacagtgtcctgcaaaataatgttacataaaagagcaacacactccctcacaccctcctcctcccaagcatacaaacgacgtctccataccca 209  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  8234529 agtcatgaacagtgtcctgcaaaataatgttacataaaagagcaacacactccctcacactctcctcctcccaagcatacaaacgacgtctccataccca 8234628  T
Q  210 cgcccttccattaccgtcccaccccaaccgcctcatctcgtcaaccttactctccttctccactgccaactcaaataatcgagggacctgtaaccgcaag 309  Q
    | ||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||    
T  8234629 cacccttccgttaccgtcccaccccaaccgcctcatctcctcaaccttactctccttctccactgccaactcaaataatctagggaactgtaaccgcaag 8234728  T
Q  310 ggagtatcccccatccaagtgtcataccagaataaggtattcctcccgttgctaaccaccctacgaacattctcgtcaaaccac 393  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||  |||||||||||||||||||    
T  8234729 ggagtatcccctatccaagtgtcataccagaataaggtattcctcccgttgccaaccaccctataaacattctcgtcaaaccac 8234812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 74 - 358
Target Start/End: Original strand, 18971309 - 18971593
Alignment:
Q  74 aatacccttgaatcgggtctaacgtccacctccaagagtcatgaacagtgtcctgcaaaataatgttacataaaagagcaacacactccctcacaccctc 173  Q
    ||||||| ||||| ||||||||| ||||||||||||||||||| ||| | |||||||||||||||||||||||||| |||   || |||||||||| |||    
T  18971309 aatacccatgaatagggtctaacatccacctccaagagtcatggacattatcctgcaaaataatgttacataaaagggcagagcagtccctcacactctc 18971408  T
Q  174 ctcctcccaagcatacaaacgacgtctccatacccacgcccttccattaccgtcccaccccaaccgcctcatctcgtcaaccttactctccttctccact 273  Q
    |||||| || | | |||  || || ||||| ||| |||||||||| |  | ||||||||||||||||| ||| ||  ||||||||  |||| | || ||     
T  18971409 ctcctctcatgtaaacagtcggcgcctccacacctacgcccttccctctctgtcccaccccaaccgccccatatccacaaccttatactccatatcgacc 18971508  T
Q  274 gccaactcaaataatcgagggacctgtaaccgcaagggagtatcccccatccaagtgtcataccagaataaggtattcctcccgt 358  Q
    ||||| ||||| |||| |||||  | ||||||||| | | | ||||| | |||  |||||||| |||||||||||| || |||||    
T  18971509 gccaaatcaaacaatcaagggaattttaaccgcaatgaaatgtcccctacccagatgtcatactagaataaggtatcccgcccgt 18971593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 67 - 358
Target Start/End: Complemental strand, 24395323 - 24395032
Alignment:
Q  67 ttcacagaatacccttgaatcgggtctaacgtccacctccaagagtcatgaacagtgtcctgcaaaataatgttacataaaagagcaacacactccctca 166  Q
    ||||| |||||||| ||||| || |||||| |||||||||| |||||||| ||| | |||||||||| ||||||||||||||| |||   || |||||||    
T  24395323 ttcactgaatacccatgaataggctctaacatccacctccaggagtcatggacattatcctgcaaaacaatgttacataaaagggcagagcagtccctca 24395224  T
Q  167 caccctcctcctcccaagcatacaaacgacgtctccatacccacgcccttccattaccgtcccaccccaaccgcctcatctcgtcaaccttactctcctt 266  Q
    ||| ||||||||| || | | |||  || || ||||| ||||||| |||||| |  | ||||||||||||| ||| ||| ||  ||||||||  |||| |    
T  24395223 cactctcctcctctcatgtaaacagtcggcgcctccacacccacgtccttccctctctgtcccaccccaactgccccatatccacaaccttatactccat 24395124  T
Q  267 ctccactgccaactcaaataatcgagggacctgtaaccgcaagggagtatcccccatccaagtgtcataccagaataaggtattcctcccgt 358  Q
     || || ||||| ||||| |||  |||||  | |||||||||  || |  |||| | |||| ||||||||||||||||||||| || |||||    
T  24395123 atcgaccgccaaatcaaacaatgaagggaattttaaccgcaacagaatgccccctacccaaatgtcataccagaataaggtatcccgcccgt 24395032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 157 - 216
Target Start/End: Complemental strand, 8770848 - 8770789
Alignment:
Q  157 cactccctcacaccctcctcctcccaagcatacaaacgacgtctccatacccacgccctt 216  Q
    ||||||||||||| |||||||||||| ||  |||| |||||||||||  |||||||||||    
T  8770848 cactccctcacactctcctcctcccaggctaacaagcgacgtctccactcccacgccctt 8770789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 154 - 209
Target Start/End: Original strand, 16478405 - 16478460
Alignment:
Q  154 acacactccctcacaccctcctcctcccaagcatacaaacgacgtctccataccca 209  Q
    ||||| ||||||||||| ||||||||||||||| | |||||||| ||||| |||||    
T  16478405 acacattccctcacaccatcctcctcccaagcaaataaacgacgcctccacaccca 16478460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 154 - 209
Target Start/End: Complemental strand, 18488996 - 18488941
Alignment:
Q  154 acacactccctcacaccctcctcctcccaagcatacaaacgacgtctccataccca 209  Q
    ||||| ||||||||||| ||||||||||||||| | |||||||| ||||| |||||    
T  18488996 acacagtccctcacaccatcctcctcccaagcaaataaacgacgcctccacaccca 18488941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 185; Significance: 1e-100; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 12 - 393
Target Start/End: Complemental strand, 41777640 - 41777253
Alignment:
Q  12 atcatcaacctgagacctttcagccatggcgcctgtgtc------aaaacggtatgctgctttcacagaatacccttgaatcgggtctaacgtccacctc 105  Q
    |||| ||||||||||||| ||||||||| ||||||||||      ||| ||||||||||||||||| || || ||||||| |||||||| | ||||||||    
T  41777640 atcaacaacctgagacctgtcagccatgacgcctgtgtctgtaataaagcggtatgctgctttcactgagtatccttgaaccgggtctagcatccacctc 41777541  T
Q  106 caagagtcatgaacagtgtcctgcaaaataatgttacataaaagagcaacacactccctcacaccctcctcctcccaagcatacaaacgacgtctccata 205  Q
    ||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||| ||| ||| |||||||||||| |    
T  41777540 caagaatcatgaacagtgtcctgcaaaacaatgttacataaaagagcaacacactccctcacacactcctcctcccacgcaaacagacgacgtctccaaa 41777441  T
Q  206 cccacgcccttccattaccgtcccaccccaaccgcctcatctcgtcaaccttactctccttctccactgccaactcaaataatcgagggacctgtaaccg 305  Q
    ||||| |||||||||||||  ||||||||||||||| |||||| || ||||||| |||||||||||| || ||||||||||| | ||| | ||  ||||     
T  41777440 cccactcccttccattaccaccccaccccaaccgccacatctcctccaccttacactccttctccaccgcgaactcaaataacctaggaaacttcaacct 41777341  T
Q  306 caagggagtatcccccatccaagtgtcataccagaataaggtattcctcccgttgctaaccaccctacgaacattctcgtcaaaccac 393  Q
    ||| ||| | ||||| ||||||||||||||||||||||| || |||||||| | || ||  ||||||||||||||||| |||||||||    
T  41777340 caacggaatctcccctatccaagtgtcataccagaataaagtgttcctcccatcgccaattaccctacgaacattctcatcaaaccac 41777253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 99 - 219
Target Start/End: Complemental strand, 29812995 - 29812875
Alignment:
Q  99 ccacctccaagagtcatgaacagtgtcctgcaaaataatgttacataaaagagcaacacactccctcacaccctcctcctcccaagcatacaaacgacgt 198  Q
    ||||||||| ||||||   ||||| |||||||||| |||||||  |||||||  |  |||||||||||||| |||||||||||| ||  ||| ||| |||    
T  29812995 ccacctccatgagtcactgacagtatcctgcaaaacaatgttatttaaaagaatataacactccctcacactctcctcctcccatgctaacagacggcgt 29812896  T
Q  199 ctccatacccacgcccttcca 219  Q
    |||||||||||||||| ||||    
T  29812895 ctccatacccacgcccctcca 29812875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 154 - 210
Target Start/End: Original strand, 20252316 - 20252372
Alignment:
Q  154 acacactccctcacaccctcctcctcccaagcatacaaacgacgtctccatacccac 210  Q
    |||||||||||||||| |||||||||||| ||  |||||||||| ||||| ||||||    
T  20252316 acacactccctcacactctcctcctcccatgctaacaaacgacgcctccaaacccac 20252372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 154 - 209
Target Start/End: Complemental strand, 21824505 - 21824450
Alignment:
Q  154 acacactccctcacaccctcctcctcccaagcatacaaacgacgtctccataccca 209  Q
    ||||| ||||||||||| ||||||||||||||| | |||||||| ||||| |||||    
T  21824505 acacattccctcacaccatcctcctcccaagcaaataaacgacgcctccacaccca 21824450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 176; Significance: 1e-94; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 10 - 393
Target Start/End: Complemental strand, 39984258 - 39983879
Alignment:
Q  10 acatcatcaacctgagacctttcagccatggcgcctgtgtc------aaaacggtatgctgctttcacagaatacccttgaatcgggtctaacgtccacc 103  Q
    |||||||||||||||||||| ||||||||| ||||||||||      |||  |||||||||||||||| || || ||||||| |||||||||| ||||||    
T  39984258 acatcatcaacctgagacctgtcagccatgacgcctgtgtctgtaataaagtggtatgctgctttcactgagtatccttgaaccgggtctaacatccacc 39984159  T
Q  104 tccaagagtcatgaacagtgtcctgcaaaataatgttacataaaagagcaacacactccctcacaccctcctcctcccaagcatacaaacgacgtctcca 203  Q
    ||||||| |||||||||||||| ||||||| |||||||||||||||||||||||||||          ||||||||||| ||| ||| ||||||||||||    
T  39984158 tccaagaatcatgaacagtgtcttgcaaaacaatgttacataaaagagcaacacactc----------tcctcctcccatgcaaacagacgacgtctcca 39984069  T
Q  204 tacccacgcccttccattaccgtcccaccccaaccgcctcatctcgtcaaccttactctccttctccactgccaactcaaataatcgagggacctgtaac 303  Q
     |||||| |||||||||||||| ||||||||||||||| |||||| || |||||||||||||||||||| |||||||||||||| | ||| | ||  |||    
T  39984068 aacccactcccttccattaccgccccaccccaaccgccacatctcctccaccttactctccttctccaccgccaactcaaataacctaggaaacttcaac 39983969  T
Q  304 cgcaagggagtatcccccatccaagtgtcataccagaataaggtattcctcccgttgctaaccaccctacgaacattctcgtcaaaccac 393  Q
    ||||| ||| | ||||| ||||||||||||||||||||||| || |||||||| | || || |||||||||||||||||| |||||||||    
T  39983968 cgcaacggaatctcccctatccaagtgtcataccagaataaagtgttcctcccatcgccaatcaccctacgaacattctcatcaaaccac 39983879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 165 - 338
Target Start/End: Original strand, 42252544 - 42252717
Alignment:
Q  165 cacaccctcctcctcccaagcatacaaacgacgtctccatacccacgcccttccattaccgtcccaccccaaccgcctcatctcgtcaaccttactctcc 264  Q
    |||||||||||||||||| ||| | |   ||||||||||||||||| |||| |||||| | |||||||||||| |||||||||     ||| ||||||||    
T  42252544 cacaccctcctcctcccatgcaaatagtagacgtctccatacccacaccctcccattagcttcccaccccaactgcctcatcttcctgaccctactctcc 42252643  T
Q  265 ttctccactgccaactcaaataatcgagggacctgtaaccgcaagggagtatcccccatccaagtgtcatacca 338  Q
    ||||||||  ||||||||||||| ||||||| |  ||||||||| || |||||||| |||||||| ||||||||    
T  42252644 ttctccaccaccaactcaaataaccgagggaaccttaaccgcaatggggtatcccctatccaagtatcatacca 42252717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 99 - 214
Target Start/End: Complemental strand, 41147442 - 41147327
Alignment:
Q  99 ccacctccaagagtcatgaacagtgtcctgcaaaataatgttacataaaagagcaacacactccctcacaccctcctcctcccaagcatacaaacgacgt 198  Q
    ||||| ||||||||||||||| |  |||||||||| |||||||  |||||||| |  | |||||||||||| ||||||||| || ||| ||| ||| |||    
T  41147442 ccaccaccaagagtcatgaactgaatcctgcaaaacaatgttatttaaaagagaagaagactccctcacactctcctcctctcacgcaaacagacggcgt 41147343  T
Q  199 ctccatacccacgccc 214  Q
    |||||  |||||||||    
T  41147342 ctccacccccacgccc 41147327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 124 - 203
Target Start/End: Original strand, 42397482 - 42397561
Alignment:
Q  124 tcctgcaaaataatgttacataaaagagcaacacactccctcacaccctcctcctcccaagcatacaaacgacgtctcca 203  Q
    |||||||||| |||||||  ||| |||   ||||||||||||||||| ||||||||||||||| | ||||||||||||||    
T  42397482 tcctgcaaaacaatgttatttaacagattgacacactccctcacaccttcctcctcccaagcaaataaacgacgtctcca 42397561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 156 - 220
Target Start/End: Original strand, 12377494 - 12377558
Alignment:
Q  156 acactccctcacaccctcctcctcccaagcatacaaacgacgtctccatacccacgcccttccat 220  Q
    |||||||||||||   ||||||||||| ||| ||||||| |||||||| |||||||||| |||||    
T  12377494 acactccctcacagattcctcctcccacgcaaacaaacggcgtctccacacccacgcccctccat 12377558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 73 - 141
Target Start/End: Complemental strand, 21141278 - 21141210
Alignment:
Q  73 gaatacccttgaatcgggtctaacgtccacctccaagagtcatgaacagtgtcctgcaaaataatgtta 141  Q
    ||||| |||||||| |||||||||  |||||||||||  ||||||| |  |||||||||||||||||||    
T  21141278 gaataaccttgaatagggtctaacagccacctccaagtatcatgaatatggtcctgcaaaataatgtta 21141210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 152 - 185
Target Start/End: Original strand, 19498002 - 19498035
Alignment:
Q  152 caacacactccctcacaccctcctcctcccaagc 185  Q
    |||||||||||||||||| |||||||||||||||    
T  19498002 caacacactccctcacactctcctcctcccaagc 19498035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 154 - 199
Target Start/End: Complemental strand, 39867595 - 39867550
Alignment:
Q  154 acacactccctcacaccctcctcctcccaagcatacaaacgacgtc 199  Q
    ||||||||||||||||  ||||||||||||||| |||| |||||||    
T  39867595 acacactccctcacactatcctcctcccaagcaaacaaccgacgtc 39867550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 127 - 220
Target Start/End: Complemental strand, 55431785 - 55431692
Alignment:
Q  127 tgcaaaataatgttacataaaagagcaacacactccctcacaccctcctcctcccaagcatacaaacgacgtctccatacccacgcccttccat 220  Q
    ||||||| |||||||  ||||||| ||  |||||||||||||| ||| |||||||| ||| ||| |||  |||||||  |||||||||| ||||    
T  55431785 tgcaaaagaatgttatgtaaaagaacagaacactccctcacacactcatcctcccatgcaaacagacggtgtctccactcccacgccctaccat 55431692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 168; Significance: 6e-90; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 168; E-Value: 6e-90
Query Start/End: Original strand, 61 - 392
Target Start/End: Original strand, 19579507 - 19579838
Alignment:
Q  61 gctgctttcacagaatacccttgaatcgggtctaacgtccacctccaagagtcatgaacagtgtcctgcaaaataatgttacataaaagagcaacacact 160  Q
    |||| |||||| |||||||| |||| ||||||||||| ||| |||||| |||||| |||| |||||||| ||||||||||||||||||||||||||||||    
T  19579507 gctgttttcaccgaatacccatgaaccgggtctaacgaccagctccaatagtcattaacactgtcctgcgaaataatgttacataaaagagcaacacact 19579606  T
Q  161 ccctcacaccctcctcctcccaagcatacaaacgacgtctccatacccacgcccttccattaccgtcccaccccaaccgcctcatctcgtcaaccttact 260  Q
    ||||||||| |||||||||||| |||||||||||||| | ||| || |||||  | ||||||||||||||||||||||||||||| || |||||||||||    
T  19579607 ccctcacactctcctcctcccatgcatacaaacgacgacgccaaacgcacgcattaccattaccgtcccaccccaaccgcctcatatcctcaaccttact 19579706  T
Q  261 ctccttctccactgccaactcaaataatcgagggacctgtaaccgcaagggagtatcccccatccaagtgtcataccagaataaggtattcctcccgttg 360  Q
    |||||||||||| ||||| |||||||||| ||||| || |||||||||  |||| ||||| | |||||| ||||||||||||||||| ||||||||||      
T  19579707 ctccttctccaccgccaaatcaaataatctagggaactttaaccgcaacagagtgtcccctacccaagtatcataccagaataaggtgttcctcccgtca 19579806  T
Q  361 ctaaccaccctacgaacattctcgtcaaacca 392  Q
    | ||||  ||| |||||||| || ||||||||    
T  19579807 ccaaccttccttcgaacattatcatcaaacca 19579838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 156 - 218
Target Start/End: Original strand, 14794715 - 14794777
Alignment:
Q  156 acactccctcacaccctcctcctcccaagcatacaaacgacgtctccatacccacgcccttcc 218  Q
    |||||||||||||| ||| |||||||||||  ||||||||||||||||  |||||||||||||    
T  14794715 acactccctcacactctcttcctcccaagctaacaaacgacgtctccactcccacgcccttcc 14794777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 156 - 214
Target Start/End: Original strand, 23027966 - 23028024
Alignment:
Q  156 acactccctcacaccctcctcctcccaagcatacaaacgacgtctccatacccacgccc 214  Q
    |||||||| ||||| |||||||||||||||| |||||||||||||||| | ||||||||    
T  23027966 acactcccgcacacactcctcctcccaagcaaacaaacgacgtctccacaaccacgccc 23028024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 172 - 220
Target Start/End: Complemental strand, 48241768 - 48241720
Alignment:
Q  172 tcctcctcccaagcatacaaacgacgtctccatacccacgcccttccat 220  Q
    ||||||||||| ||| ||||||||||||||||| |||| ||||||||||    
T  48241768 tcctcctcccacgcaaacaaacgacgtctccatccccatgcccttccat 48241720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 117; Significance: 2e-59; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 51 - 295
Target Start/End: Complemental strand, 15864007 - 15863763
Alignment:
Q  51 aaaacggtatgctgctttcacagaatacccttgaatcgggtctaacgtccacctccaagagtcatgaacagtgtcctgcaaaataatgttacataaaaga 150  Q
    |||||| |||| ||||||||| ||||||||||||| ||| ||||    |||||||| |||||| ||||||||||||||||||| |||||| |||||||||    
T  15864007 aaaacgatatgatgctttcaccgaatacccttgaaccggatctagtaaccacctcctagagtcttgaacagtgtcctgcaaaacaatgttgcataaaaga 15863908  T
Q  151 gcaacacactccctcacaccctcctcctcccaagcatacaaacgacgtctccatacccacgcccttccattaccgtcccaccccaaccgcctcatctcgt 250  Q
    |   ||||||||||||||| |||||||| | || || |||||||||||||||| ||||||||||| |||||| |||||||||||  || ||||||||| |    
T  15863907 gttgcacactccctcacactctcctccttcgaaacaaacaaacgacgtctccacacccacgccctgccattaacgtcccaccccctcctcctcatctcct 15863808  T
Q  251 caaccttactctccttctccactgccaactcaaataatcgaggga 295  Q
    | |||||| ||||||||||||| |||||||||||||| |||||||    
T  15863807 cgaccttagtctccttctccaccgccaactcaaataaccgaggga 15863763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 61 - 182
Target Start/End: Original strand, 38921610 - 38921731
Alignment:
Q  61 gctgctttcacagaatacccttgaatcgggtctaacgtccacctccaagagtcatgaacagtgtcctgcaaaataatgttacataaaagagcaacacact 160  Q
    |||| |||||| |||||||| | ||  |||||||||  ||||||||| |||||||| ||| | |||||||||| |||||||||||||| ||||   ||||    
T  38921610 gctgttttcactgaatacccattaacggggtctaacagccacctccaggagtcatggacattttcctgcaaaacaatgttacataaaaaagcagagcact 38921709  T
Q  161 ccctcacaccctcctcctccca 182  Q
    ||||||||| ||||||||||||    
T  38921710 ccctcacactctcctcctccca 38921731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 157 - 218
Target Start/End: Original strand, 3773691 - 3773752
Alignment:
Q  157 cactccctcacaccctcctcctcccaagcatacaaacgacgtctccatacccacgcccttcc 218  Q
    |||||||||||||  ||||||||||||||  |||| || |||||||| ||||||||||||||    
T  3773691 cactccctcacactttcctcctcccaagctaacaaccggcgtctccacacccacgcccttcc 3773752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 157 - 214
Target Start/End: Original strand, 16975025 - 16975082
Alignment:
Q  157 cactccctcacaccctcctcctcccaagcatacaaacgacgtctccatacccacgccc 214  Q
    ||||||| ||||| |||||||||||||||| ||| |||||||||||| | ||||||||    
T  16975025 cactcccgcacacactcctcctcccaagcaaacagacgacgtctccacaaccacgccc 16975082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 157 - 218
Target Start/End: Original strand, 13448831 - 13448892
Alignment:
Q  157 cactccctcacaccctcctcctcccaagcatacaaacgacgtctccatacccacgcccttcc 218  Q
    |||||||||| || |||||||||||| ||  ||||||| ||||||||  |||||||||||||    
T  13448831 cactccctcaaactctcctcctcccaggctaacaaacgccgtctccactcccacgcccttcc 13448892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 156 - 220
Target Start/End: Complemental strand, 42452534 - 42452470
Alignment:
Q  156 acactccctcacaccctcctcctcccaagcatacaaacgacgtctccatacccacgcccttccat 220  Q
    |||||||||||||   ||||||||||| ||| | | |||||||||||| |||||||||| |||||    
T  42452534 acactccctcacagattcctcctcccacgcaaatagacgacgtctccacacccacgcccctccat 42452470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 98; Significance: 4e-48; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 29 - 205
Target Start/End: Complemental strand, 29648487 - 29648310
Alignment:
Q  29 tttcagccatggcgcctgtgtcaaaacggtatgctgctttcacagaatacccttgaatcgggtctaacgtccacctccaagagtcatgaacagtgtcctg 128  Q
    |||||||||||||||||||   ||||||||||||||||||||| ||||||||| ||| ||| |||||||||||||||||||||||||||||| |||||||    
T  29648487 tttcagccatggcgcctgtaataaaacggtatgctgctttcaccgaataccctcgaa-cggatctaacgtccacctccaagagtcatgaacattgtcctg 29648389  T
Q  129 caaaataatgttacataaaagagcaacacactccctcacac---cctcctcctcccaagcatacaaacgacgtctccata 205  Q
    || |  || ||||||||||| || |||||||||||||||||   ||||||||||||||||||||||||||| ||||||||    
T  29648388 cacatcaaagttacataaaa-agaaacacactccctcacactctcctcctcctcccaagcatacaaacgacatctccata 29648310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 157 - 220
Target Start/End: Complemental strand, 355781 - 355718
Alignment:
Q  157 cactccctcacaccctcctcctcccaagcatacaaacgacgtctccatacccacgcccttccat 220  Q
    ||||||| ||||| |||||||||||||||| |||||||||||||||| | ||||||||| ||||    
T  355781 cactcccgcacacactcctcctcccaagcaaacaaacgacgtctccacaaccacgccctaccat 355718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 156 - 220
Target Start/End: Original strand, 40368985 - 40369049
Alignment:
Q  156 acactccctcacaccctcctcctcccaagcatacaaacgacgtctccatacccacgcccttccat 220  Q
    |||||||||||||   ||||||||||| ||| ||| |||||||||||||||||| |||| |||||    
T  40368985 acactccctcacagattcctcctcccacgcaaacagacgacgtctccatacccatgcccctccat 40369049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 103 - 141
Target Start/End: Complemental strand, 28543092 - 28543054
Alignment:
Q  103 ctccaagagtcatgaacagtgtcctgcaaaataatgtta 141  Q
    |||||||| |||||||||||||||| |||||||||||||    
T  28543092 ctccaagaatcatgaacagtgtcctacaaaataatgtta 28543054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 156 - 213
Target Start/End: Original strand, 20213809 - 20213866
Alignment:
Q  156 acactccctcacaccctcctcctcccaagcatacaaacgacgtctccatacccacgcc 213  Q
    ||||||||||| || |||||||||||||||  ||||| | |||||||| |||||||||    
T  20213809 acactccctcagactctcctcctcccaagctaacaaatggcgtctccacacccacgcc 20213866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0074 (Bit Score: 72; Significance: 1e-32; HSPs: 1)
Name: scaffold0074
Description:

Target: scaffold0074; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 67 - 358
Target Start/End: Complemental strand, 25410 - 25119
Alignment:
Q  67 ttcacagaatacccttgaatcgggtctaacgtccacctccaagagtcatgaacagtgtcctgcaaaataatgttacataaaagagcaacacactccctca 166  Q
    ||||| |||||||| |||||  |||||||| ||||||||||||||||||| ||| | |||||||||||||||||||||||||| |||   || |||||||    
T  25410 ttcactgaatacccatgaataaggtctaacatccacctccaagagtcatggacattatcctgcaaaataatgttacataaaagggcagagcagtccctca 25311  T
Q  167 caccctcctcctcccaagcatacaaacgacgtctccatacccacgcccttccattaccgtcccaccccaaccgcctcatctcgtcaaccttactctcctt 266  Q
    ||| ||||||||| || |   |||  || || ||||| |||||||||||||| |  | ||||||||||||||||| ||| ||  ||||||||  |||| |    
T  25310 cactctcctcctctcatgtgaacagtcggcgcctccacacccacgcccttccctctctgtcccaccccaaccgccccatatccacaaccttatactccat 25211  T
Q  267 ctccactgccaactcaaataatcgagggacctgtaaccgcaagggagtatcccccatccaagtgtcataccagaataaggtattcctcccgt 358  Q
     || |||||||| || || |||| |||||  | ||||||||| | | | ||| | | |||  ||||||||||||||||||||| || |||||    
T  25210 atcgactgccaaatctaacaatcaagggaattttaaccgcaacgaaatgtcctctacccagatgtcataccagaataaggtatcccgcccgt 25119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 125 - 241
Target Start/End: Complemental strand, 21736946 - 21736830
Alignment:
Q  125 cctgcaaaataatgttacataaaagagcaacacactccctcacaccctcctcctcccaagcatacaaacgacgtctccatacccacgcccttccattacc 224  Q
    ||||||||| |||||||||||| || | |  |||||||||||||| |||||||||||||||| |||| || || ||||| ||||| ||| |||| |  ||    
T  21736946 cctgcaaaacaatgttacataacagggtagaacactccctcacactctcctcctcccaagcaaacaaccggcgcctccacacccatgccattccctctcc 21736847  T
Q  225 gtcccaccccaaccgcc 241  Q
     ||||| ||||||||||    
T  21736846 atcccatcccaaccgcc 21736830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 152 - 191
Target Start/End: Original strand, 18378308 - 18378347
Alignment:
Q  152 caacacactccctcacaccctcctcctcccaagcatacaa 191  Q
    ||||||||||||||||||||||||||||||||||| ||||    
T  18378308 caacacactccctcacaccctcctcctcccaagcaaacaa 18378347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 88 - 185
Target Start/End: Original strand, 36731087 - 36731184
Alignment:
Q  88 gggtctaacgtccacctccaagagtcatgaacagtgtcctgcaaaataatgttacataaaagagcaacacactccctcacaccctcctcctcccaagc 185  Q
    |||||||||| ||||||||||   || |||||| | |||||||||| ||||||   ||| | | ||  ||||||||||||||||||||||||||||||    
T  36731087 gggtctaacgaccacctccaaacatcgtgaacactatcctgcaaaacaatgttctgtaataaaacagaacactccctcacaccctcctcctcccaagc 36731184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 154 - 218
Target Start/End: Original strand, 35273346 - 35273410
Alignment:
Q  154 acacactccctcacaccctcctcctcccaagcatacaaacgacgtctccatacccacgcccttcc 218  Q
    |||||||||||||| |  ||||||||||||||  |||| ||||||||||| ||||||| ||||||    
T  35273346 acacactccctcacgctttcctcctcccaagctaacaaccgacgtctccacacccacgtccttcc 35273410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 157 - 213
Target Start/End: Original strand, 33335580 - 33335636
Alignment:
Q  157 cactccctcacaccctcctcctcccaagcatacaaacgacgtctccatacccacgcc 213  Q
    ||||||||||| | ||||||||| || ||| ||| |||||||||||| |||||||||    
T  33335580 cactccctcacgcgctcctcctctcacgcaaacagacgacgtctccacacccacgcc 33335636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 124 - 212
Target Start/End: Complemental strand, 53505154 - 53505066
Alignment:
Q  124 tcctgcaaaataatgttacataaaagagcaacacactccctcacaccctcctcctcccaagcatacaaacgacgtctccatacccacgc 212  Q
    |||||||||| |||||||  ||| | ||||  |||||||||||||| ||| |||||||| ||  |||| || |||||||| ||||||||    
T  53505154 tcctgcaaaacaatgttaagtaacaaagcacaacactccctcacactctcttcctcccatgctaacaatcgtcgtctccacacccacgc 53505066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 156 - 214
Target Start/End: Original strand, 48778350 - 48778408
Alignment:
Q  156 acactccctcacaccctcctcctcccaagcatacaaacgacgtctccatacccacgccc 214  Q
    |||||||| ||||| |||||||||||||||| |||||||||||||||| | ||||||||    
T  48778350 acactcccgcacacactcctcctcccaagcaaacaaacgacgtctccacaaccacgccc 48778408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 124 - 210
Target Start/End: Original strand, 22359463 - 22359549
Alignment:
Q  124 tcctgcaaaataatgttacataaaagagcaacacactccctcacaccctcctcctcccaagcatacaaacgacgtctccatacccac 210  Q
    |||||||||| |||||||  ||| || | ||||||||||||||||| ||| |||||||||||   ||| ||||| ||||| ||||||    
T  22359463 tcctgcaaaacaatgttatttaacagtgaaacacactccctcacactctcttcctcccaagccagcaatcgacgcctccaaacccac 22359549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 159 - 220
Target Start/End: Complemental strand, 6800270 - 6800209
Alignment:
Q  159 ctccctcacaccctcctcctcccaagcatacaaacgacgtctccatacccacgcccttccat 220  Q
    ||||||||||   ||||||||||| ||| ||||||| |||||||| |||||||||| |||||    
T  6800270 ctccctcacatattcctcctcccacgcaaacaaacggcgtctccacacccacgcccctccat 6800209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 152 - 185
Target Start/End: Original strand, 31396054 - 31396087
Alignment:
Q  152 caacacactccctcacaccctcctcctcccaagc 185  Q
    |||||||||||||||||| |||||||||||||||    
T  31396054 caacacactccctcacactctcctcctcccaagc 31396087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 130 - 218
Target Start/End: Original strand, 35782236 - 35782324
Alignment:
Q  130 aaaataatgttacataaaagagcaacacactccctcacaccctcctcctcccaagcatacaaacgacgtctccatacccacgcccttcc 218  Q
    ||||||||||||  ||||||| ||   ||||||||||||| |||||||||| | ||| ||| ||| |||||| |  |||||||||||||    
T  35782236 aaaataatgttatttaaaagaacagagcactccctcacacactcctcctcctatgcaaacagacgtcgtctctactcccacgcccttcc 35782324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0259 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0259
Description:

Target: scaffold0259; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 103 - 182
Target Start/End: Complemental strand, 3665 - 3586
Alignment:
Q  103 ctccaagagtcatgaacagtgtcctgcaaaataatgttacataaaagagcaacacactccctcacaccctcctcctccca 182  Q
    ||||||||||||| | | ||||||| ||||| |||||||  ||||||| ||  |||||||||||||  ||||||||||||    
T  3665 ctccaagagtcattagcggtgtcctacaaaacaatgttatgtaaaagaacataacactccctcacatactcctcctccca 3586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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