View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6432_low_4 (Length: 311)
Name: NF6432_low_4
Description: NF6432
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6432_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 112; Significance: 1e-56; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 16 - 127
Target Start/End: Complemental strand, 54282763 - 54282652
Alignment:
| Q |
16 |
catattacatcctgcaaaagcatgtcaagcatcatcaacctatctccgcaccaaggacaatgtaagagacattggatgtgtctttgagctagcatgacac |
115 |
Q |
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| T |
54282763 |
catattacatcctgcaaaagcatgtcaagcatcatcaacctatctccgcaccaaggacaatgtaagagacattggatgtgtctttgagctagcatgacac |
54282664 |
T |
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| Q |
116 |
gtgtcggcacac |
127 |
Q |
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| T |
54282663 |
gtgtcggcacac |
54282652 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 193 - 269
Target Start/End: Complemental strand, 54282650 - 54282574
Alignment:
| Q |
193 |
tccagtcacctaacagatgagatttgaatcgatggaataatgtcctcttggactgaatcaaacagatgagtagctag |
269 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54282650 |
tccagtcacctaacagatgagatttgaatcgatggaataatgtcctcttggactgaatcaaacagatgagtagctag |
54282574 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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