View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6432_low_5 (Length: 309)

Name: NF6432_low_5
Description: NF6432
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6432_low_5
NF6432_low_5
[»] chr3 (10 HSPs)
chr3 (19-309)||(39671104-39671409)
chr3 (248-309)||(39020166-39020229)
chr3 (273-309)||(44677491-44677527)
chr3 (249-309)||(10206980-10207048)
chr3 (253-309)||(36121826-36121885)
chr3 (273-309)||(24482970-24483006)
chr3 (273-309)||(32767704-32767740)
chr3 (273-309)||(33375888-33375924)
chr3 (273-309)||(49363258-49363294)
chr3 (273-309)||(50206977-50207013)
[»] chr6 (5 HSPs)
chr6 (253-309)||(14986752-14986812)
chr6 (273-309)||(11547536-11547572)
chr6 (273-309)||(13143389-13143425)
chr6 (275-309)||(2777323-2777357)
chr6 (273-309)||(30152537-30152573)
[»] scaffold0204 (1 HSPs)
scaffold0204 (253-309)||(23086-23140)
[»] chr4 (15 HSPs)
chr4 (253-309)||(48335564-48335618)
chr4 (272-309)||(41262352-41262389)
chr4 (273-309)||(439267-439303)
chr4 (252-308)||(25318073-25318128)
chr4 (273-309)||(39344987-39345023)
chr4 (271-307)||(47240843-47240879)
chr4 (271-309)||(6141785-6141823)
chr4 (251-309)||(22819647-22819713)
chr4 (250-309)||(31275151-31275209)
chr4 (273-309)||(624319-624355)
chr4 (273-309)||(5932164-5932200)
chr4 (273-309)||(9118871-9118907)
chr4 (277-309)||(26206984-26207016)
chr4 (273-309)||(30079874-30079910)
chr4 (249-304)||(35820174-35820230)
[»] chr7 (7 HSPs)
chr7 (251-308)||(46773650-46773715)
chr7 (273-306)||(37808774-37808807)
chr7 (250-307)||(21822608-21822673)
chr7 (273-309)||(32815196-32815232)
chr7 (250-309)||(26749014-26749068)
chr7 (250-309)||(39231735-39231802)
chr7 (277-309)||(40353296-40353328)
[»] chr2 (7 HSPs)
chr2 (254-309)||(13265975-13266029)
chr2 (250-309)||(29684619-29684686)
chr2 (273-309)||(13347822-13347858)
chr2 (273-309)||(35589394-35589430)
chr2 (253-306)||(17779391-17779447)
chr2 (277-309)||(433882-433914)
chr2 (273-309)||(18176968-18177004)
[»] chr1 (12 HSPs)
chr1 (246-307)||(38303697-38303755)
chr1 (273-309)||(44294043-44294079)
chr1 (275-309)||(20565125-20565159)
chr1 (275-309)||(26837482-26837516)
chr1 (275-309)||(29586023-29586057)
chr1 (253-309)||(47398459-47398511)
chr1 (273-309)||(1852958-1852994)
chr1 (273-309)||(3603139-3603175)
chr1 (273-309)||(8411725-8411761)
chr1 (273-309)||(9008253-9008289)
chr1 (273-309)||(33024578-33024614)
chr1 (273-309)||(36577419-36577455)
[»] chr8 (8 HSPs)
chr8 (273-309)||(33589237-33589273)
chr8 (273-309)||(34018836-34018872)
chr8 (249-309)||(41520964-41521032)
chr8 (273-309)||(1633897-1633933)
chr8 (273-309)||(11017833-11017869)
chr8 (273-309)||(11658007-11658043)
chr8 (273-309)||(16966813-16966849)
chr8 (273-309)||(45529253-45529289)
[»] chr5 (8 HSPs)
chr5 (273-309)||(8267827-8267863)
chr5 (254-304)||(2688998-2689047)
chr5 (250-309)||(8675440-8675507)
chr5 (251-309)||(5042246-5042312)
chr5 (273-306)||(5821622-5821655)
chr5 (251-309)||(23126350-23126416)
chr5 (273-309)||(21064233-21064269)
chr5 (273-309)||(35099012-35099048)
[»] scaffold0321 (1 HSPs)
scaffold0321 (273-309)||(19664-19700)


Alignment Details
Target: chr3 (Bit Score: 183; Significance: 5e-99; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 183; E-Value: 5e-99
Query Start/End: Original strand, 19 - 309
Target Start/End: Complemental strand, 39671409 - 39671104
Alignment:
Q  19 tataagtcctttgacaatgtattattcactaagaacatttcgtcatgtctatcgatcaaatacaatcgcttgctcaaaacaattataaacnnnnnnnnnn 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||              
T  39671409 tataagtcctttgacaatgtattattcactaagaacatttcgtcatgtctatcgatcaaatacaatcgcttgcacaaaacaattataaac---aaaaaaa 39671313  T
Q  119 nntcattttaaacctaactcaaattcacacatgaaaagtattctcctccaagaccaacaaacgacatatactccaaacccct---------tacatgcac 209  Q
      ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||         |||||||||    
T  39671312 attcattctaaacctaactcaaattcacacatgaaaagtattctcctccaagaccaacaaacgacatatactccaaaccccttactaaatatacatgcac 39671213  T
Q  210 ctaacacattttaatagccaaaatataaagtctattagataaagagaaatgatatttgaacat--------tgacaatttttgcaacaattttctctc-t 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        |||||| ||||||||||| |||||||| |    
T  39671212 ctaacacattttaatagccaaaatataaagtctattagataaagagaaatgatatttgaacatctatttagtgacaacttttgcaacaactttctctctt 39671113  T
Q  301 catactcac 309  Q
    |||||||||    
T  39671112 catactcac 39671104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 248 - 309
Target Start/End: Complemental strand, 39020229 - 39020166
Alignment:
Q  248 ataaagagaaatgatatttgaacatt--gacaatttttgcaacaattttctctctcatactcac 309  Q
    ||||||||||||||||||||||||||  ||||| |||| ||| || ||| ||||||||||||||    
T  39020229 ataaagagaaatgatatttgaacattcagacaacttttacaataactttttctctcatactcac 39020166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 273 - 309
Target Start/End: Complemental strand, 44677527 - 44677491
Alignment:
Q  273 tgacaatttttgcaacaattttctctctcatactcac 309  Q
    |||||| ||||||||||||||||||||||||||||||    
T  44677527 tgacaacttttgcaacaattttctctctcatactcac 44677491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 249 - 309
Target Start/End: Complemental strand, 10207048 - 10206980
Alignment:
Q  249 taaagagaaatgatatttgaacat--------tgacaatttttgcaacaattttctctctcatactcac 309  Q
    ||||||||||||||||||||||||        |||||| ||||||||||| ||||||||||||||||||    
T  10207048 taaagagaaatgatatttgaacatccatttagtgacaacttttgcaacaactttctctctcatactcac 10206980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 253 - 309
Target Start/End: Original strand, 36121826 - 36121885
Alignment:
Q  253 gagaaatgatatttgaacat---tgacaatttttgcaacaattttctctctcatactcac 309  Q
    ||||||||||||||||||||   |||||| ||||||||||| ||||| ||| ||||||||    
T  36121826 gagaaatgatatttgaacataaatgacaacttttgcaacaactttctttcttatactcac 36121885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 273 - 309
Target Start/End: Complemental strand, 24483006 - 24482970
Alignment:
Q  273 tgacaatttttgcaacaattttctctctcatactcac 309  Q
    |||||| ||||||||||| ||||||||||||||||||    
T  24483006 tgacaacttttgcaacaactttctctctcatactcac 24482970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 273 - 309
Target Start/End: Original strand, 32767704 - 32767740
Alignment:
Q  273 tgacaatttttgcaacaattttctctctcatactcac 309  Q
    |||||| |||||||| |||||||||||||||||||||    
T  32767704 tgacaacttttgcaataattttctctctcatactcac 32767740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 273 - 309
Target Start/End: Original strand, 33375888 - 33375924
Alignment:
Q  273 tgacaatttttgcaacaattttctctctcatactcac 309  Q
    |||||| |||| |||||||||||||||||||||||||    
T  33375888 tgacaacttttacaacaattttctctctcatactcac 33375924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 273 - 309
Target Start/End: Complemental strand, 49363294 - 49363258
Alignment:
Q  273 tgacaatttttgcaacaattttctctctcatactcac 309  Q
    |||||| ||||||||||| ||||||||||||||||||    
T  49363294 tgacaacttttgcaacaactttctctctcatactcac 49363258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 273 - 309
Target Start/End: Complemental strand, 50207013 - 50206977
Alignment:
Q  273 tgacaatttttgcaacaattttctctctcatactcac 309  Q
    |||||| ||||||||||| ||||||||||||||||||    
T  50207013 tgacaacttttgcaacaactttctctctcatactcac 50206977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 253 - 309
Target Start/End: Complemental strand, 14986812 - 14986752
Alignment:
Q  253 gagaaatgatatttgaacatt----gacaatttttgcaacaattttctctctcatactcac 309  Q
    |||||||||||||||||||||    ||||| ||||||||||||||||||||||||||||||    
T  14986812 gagaaatgatatttgaacatttagtgacaacttttgcaacaattttctctctcatactcac 14986752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 273 - 309
Target Start/End: Complemental strand, 11547572 - 11547536
Alignment:
Q  273 tgacaatttttgcaacaattttctctctcatactcac 309  Q
    |||||| ||||||||||||||||||||||||||||||    
T  11547572 tgacaacttttgcaacaattttctctctcatactcac 11547536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 273 - 309
Target Start/End: Complemental strand, 13143425 - 13143389
Alignment:
Q  273 tgacaatttttgcaacaattttctctctcatactcac 309  Q
    |||||||||||||||||| ||||||||||||||||||    
T  13143425 tgacaatttttgcaacaactttctctctcatactcac 13143389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 275 - 309
Target Start/End: Complemental strand, 2777357 - 2777323
Alignment:
Q  275 acaatttttgcaacaattttctctctcatactcac 309  Q
    |||| ||||||||||||||||||||||||||||||    
T  2777357 acaacttttgcaacaattttctctctcatactcac 2777323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 273 - 309
Target Start/End: Complemental strand, 30152573 - 30152537
Alignment:
Q  273 tgacaatttttgcaacaattttctctctcatactcac 309  Q
    |||||| ||||||||||| ||||||||||||||||||    
T  30152573 tgacaacttttgcaacaactttctctctcatactcac 30152537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0204 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0204
Description:

Target: scaffold0204; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 253 - 309
Target Start/End: Original strand, 23086 - 23140
Alignment:
Q  253 gagaaatgatatttgaacattgacaatttttgcaacaattttctctctcatactcac 309  Q
    ||||||||||||| ||||||  |||||||||||||||||||||||||||||| ||||    
T  23086 gagaaatgatattcgaacat--acaatttttgcaacaattttctctctcatattcac 23140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 253 - 309
Target Start/End: Original strand, 48335564 - 48335618
Alignment:
Q  253 gagaaatgatatttgaacattgacaatttttgcaacaattttctctctcatactcac 309  Q
    ||||||||||||| ||||||  |||||||||||||||||||||||||||||| ||||    
T  48335564 gagaaatgatattcgaacat--acaatttttgcaacaattttctctctcatattcac 48335618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 272 - 309
Target Start/End: Complemental strand, 41262389 - 41262352
Alignment:
Q  272 ttgacaatttttgcaacaattttctctctcatactcac 309  Q
    |||||||||||||||||||||||||||||| |||||||    
T  41262389 ttgacaatttttgcaacaattttctctctcttactcac 41262352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 273 - 309
Target Start/End: Complemental strand, 439303 - 439267
Alignment:
Q  273 tgacaatttttgcaacaattttctctctcatactcac 309  Q
    |||||||||| ||||||||||||||||||||||||||    
T  439303 tgacaattttcgcaacaattttctctctcatactcac 439267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 252 - 308
Target Start/End: Complemental strand, 25318128 - 25318073
Alignment:
Q  252 agagaaatgatatttgaacattgacaatttttgcaacaattttctctctcatactca 308  Q
    |||||||||||||||||| || || || |||||| ||||||||||||||||||||||    
T  25318128 agagaaatgatatttgaatat-gataacttttgcgacaattttctctctcatactca 25318073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 273 - 309
Target Start/End: Complemental strand, 39345023 - 39344987
Alignment:
Q  273 tgacaatttttgcaacaattttctctctcatactcac 309  Q
    |||||||||||||||||| ||||||||||||||||||    
T  39345023 tgacaatttttgcaacaactttctctctcatactcac 39344987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 271 - 307
Target Start/End: Original strand, 47240843 - 47240879
Alignment:
Q  271 attgacaatttttgcaacaattttctctctcatactc 307  Q
    |||||||||||||||||||| ||||||||||||||||    
T  47240843 attgacaatttttgcaacaactttctctctcatactc 47240879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 271 - 309
Target Start/End: Complemental strand, 6141823 - 6141785
Alignment:
Q  271 attgacaatttttgcaacaattttctctctcatactcac 309  Q
    |||||||| ||||||||||| ||||||||||||||||||    
T  6141823 attgacaacttttgcaacaactttctctctcatactcac 6141785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 251 - 309
Target Start/End: Original strand, 22819647 - 22819713
Alignment:
Q  251 aagagaaatgatatttgaacat--------tgacaatttttgcaacaattttctctctcatactcac 309  Q
    ||||||||||||||||||||||        |||||| ||||||||||| ||||||||||||||||||    
T  22819647 aagagaaatgatatttgaacatccattttgtgacaacttttgcaacaactttctctctcatactcac 22819713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 250 - 309
Target Start/End: Original strand, 31275151 - 31275209
Alignment:
Q  250 aaagagaaatgatatttgaacattgacaa-tttttgcaacaattttctctctcatactcac 309  Q
    |||||||||||||||||| ||| |||||| ||||||  |||| ||||||||||||||||||    
T  31275151 aaagagaaatgatatttgtacagtgacaactttttg--acaactttctctctcatactcac 31275209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 273 - 309
Target Start/End: Complemental strand, 624355 - 624319
Alignment:
Q  273 tgacaatttttgcaacaattttctctctcatactcac 309  Q
    |||||| ||||||||||| ||||||||||||||||||    
T  624355 tgacaacttttgcaacaactttctctctcatactcac 624319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 273 - 309
Target Start/End: Complemental strand, 5932200 - 5932164
Alignment:
Q  273 tgacaatttttgcaacaattttctctctcatactcac 309  Q
    |||||| ||||||||||| ||||||||||||||||||    
T  5932200 tgacaacttttgcaacaactttctctctcatactcac 5932164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 273 - 309
Target Start/End: Complemental strand, 9118907 - 9118871
Alignment:
Q  273 tgacaatttttgcaacaattttctctctcatactcac 309  Q
    |||||| ||||||||||||||||||||||||| ||||    
T  9118907 tgacaacttttgcaacaattttctctctcataatcac 9118871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 277 - 309
Target Start/End: Complemental strand, 26207016 - 26206984
Alignment:
Q  277 aatttttgcaacaattttctctctcatactcac 309  Q
    |||||||||||||||||||||||||||| ||||    
T  26207016 aatttttgcaacaattttctctctcatattcac 26206984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 273 - 309
Target Start/End: Original strand, 30079874 - 30079910
Alignment:
Q  273 tgacaatttttgcaacaattttctctctcatactcac 309  Q
    |||||| ||||||||||| ||||||||||||||||||    
T  30079874 tgacaacttttgcaacaactttctctctcatactcac 30079910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 249 - 304
Target Start/End: Original strand, 35820174 - 35820230
Alignment:
Q  249 taaagagaaatgatatttgaacatt-gacaatttttgcaacaattttctctctcata 304  Q
    |||| ||||||||||||||||||||  |||| |||| |||||| |||||||||||||    
T  35820174 taaacagaaatgatatttgaacattcaacaacttttacaacaactttctctctcata 35820230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.000000000007; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 251 - 308
Target Start/End: Complemental strand, 46773715 - 46773650
Alignment:
Q  251 aagagaaatgatatttgaacat--------tgacaatttttgcaacaattttctctctcatactca 308  Q
    ||||||||||||||||||||||        ||||||||||||||||||||||||||||||||||||    
T  46773715 aagagaaatgatatttgaacatccattcagtgacaatttttgcaacaattttctctctcatactca 46773650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 273 - 306
Target Start/End: Complemental strand, 37808807 - 37808774
Alignment:
Q  273 tgacaatttttgcaacaattttctctctcatact 306  Q
    ||||||||||||||||||||||||||||||||||    
T  37808807 tgacaatttttgcaacaattttctctctcatact 37808774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 250 - 307
Target Start/End: Complemental strand, 21822673 - 21822608
Alignment:
Q  250 aaagagaaatgatatttgaacat--------tgacaatttttgcaacaattttctctctcatactc 307  Q
    |||||||||||||||||||||||        ||||||||||||||||||| |||||||||||||||    
T  21822673 aaagagaaatgatatttgaacatctattttgtgacaatttttgcaacaatgttctctctcatactc 21822608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 273 - 309
Target Start/End: Original strand, 32815196 - 32815232
Alignment:
Q  273 tgacaatttttgcaacaattttctctctcatactcac 309  Q
    |||||||||||||||||||||| ||||||||||||||    
T  32815196 tgacaatttttgcaacaattttttctctcatactcac 32815232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 250 - 309
Target Start/End: Original strand, 26749014 - 26749068
Alignment:
Q  250 aaagagaaatgatatttgaacattgacaatttttgcaacaattttctctctcatactcac 309  Q
    ||||||||||||||||||||||   ||||||||||  |||| ||||||||||||||||||    
T  26749014 aaagagaaatgatatttgaaca---acaatttttg--acaactttctctctcatactcac 26749068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 250 - 309
Target Start/End: Complemental strand, 39231802 - 39231735
Alignment:
Q  250 aaagagaaatgatatttgaacat--------tgacaatttttgcaacaattttctctctcatactcac 309  Q
    |||||||||||||||||||||||        |||||| ||||||||||| ||||||||||||||||||    
T  39231802 aaagagaaatgatatttgaacatccagttagtgacaacttttgcaacaactttctctctcatactcac 39231735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 277 - 309
Target Start/End: Original strand, 40353296 - 40353328
Alignment:
Q  277 aatttttgcaacaattttctctctcatactcac 309  Q
    |||||||||||||| ||||||||||||||||||    
T  40353296 aatttttgcaacaactttctctctcatactcac 40353328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000003; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 254 - 309
Target Start/End: Original strand, 13265975 - 13266029
Alignment:
Q  254 agaaatgatatttgaacattgacaatttttgcaacaattttctctctcatactcac 309  Q
    |||||||||||||| |||   |||||||||||||||||||||||||||||||||||    
T  13265975 agaaatgatatttgtacaac-acaatttttgcaacaattttctctctcatactcac 13266029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 250 - 309
Target Start/End: Complemental strand, 29684686 - 29684619
Alignment:
Q  250 aaagagaaatgatatttgaacatt--------gacaatttttgcaacaattttctctctcatactcac 309  Q
    ||||||||||||||||||||||||        ||||||||||||||||| ||||||||||||||||||    
T  29684686 aaagagaaatgatatttgaacatttatttagtgacaatttttgcaacaactttctctctcatactcac 29684619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 273 - 309
Target Start/End: Complemental strand, 13347858 - 13347822
Alignment:
Q  273 tgacaatttttgcaacaattttctctctcatactcac 309  Q
    |||||||||||||||||| ||||||||||||||||||    
T  13347858 tgacaatttttgcaacaactttctctctcatactcac 13347822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 273 - 309
Target Start/End: Complemental strand, 35589430 - 35589394
Alignment:
Q  273 tgacaatttttgcaacaattttctctctcatactcac 309  Q
    |||||| ||||||||||||||||||||||||||||||    
T  35589430 tgacaacttttgcaacaattttctctctcatactcac 35589394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 253 - 306
Target Start/End: Original strand, 17779391 - 17779447
Alignment:
Q  253 gagaaatgatatttgaacatt---gacaatttttgcaacaattttctctctcatact 306  Q
    ||||||| |||||||||||||   ||||||||||||||||| ||| |||||||||||    
T  17779391 gagaaataatatttgaacattagtgacaatttttgcaacaactttttctctcatact 17779447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 277 - 309
Target Start/End: Original strand, 433882 - 433914
Alignment:
Q  277 aatttttgcaacaattttctctctcatactcac 309  Q
    |||||||||||||| ||||||||||||||||||    
T  433882 aatttttgcaacaactttctctctcatactcac 433914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 273 - 309
Target Start/End: Original strand, 18176968 - 18177004
Alignment:
Q  273 tgacaatttttgcaacaattttctctctcatactcac 309  Q
    |||||| ||||||||||| ||||||||||||||||||    
T  18176968 tgacaacttttgcaacaactttctctctcatactcac 18177004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 246 - 307
Target Start/End: Complemental strand, 38303755 - 38303697
Alignment:
Q  246 agataaagagaaatgatatttgaacattgacaatttttgcaacaattttctctctcatactc 307  Q
    |||||||||||||||||||||||||||   ||| |||| |||||| ||||||||||||||||    
T  38303755 agataaagagaaatgatatttgaacat---caacttttacaacaactttctctctcatactc 38303697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 273 - 309
Target Start/End: Original strand, 44294043 - 44294079
Alignment:
Q  273 tgacaatttttgcaacaattttctctctcatactcac 309  Q
    ||||||||||||||| |||||||||||||||||||||    
T  44294043 tgacaatttttgcaataattttctctctcatactcac 44294079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 275 - 309
Target Start/End: Complemental strand, 20565159 - 20565125
Alignment:
Q  275 acaatttttgcaacaattttctctctcatactcac 309  Q
    |||||||||||||||| ||||||||||||||||||    
T  20565159 acaatttttgcaacaactttctctctcatactcac 20565125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 275 - 309
Target Start/End: Original strand, 26837482 - 26837516
Alignment:
Q  275 acaatttttgcaacaattttctctctcatactcac 309  Q
    |||| ||||||||||||||||||||||||||||||    
T  26837482 acaacttttgcaacaattttctctctcatactcac 26837516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 275 - 309
Target Start/End: Original strand, 29586023 - 29586057
Alignment:
Q  275 acaatttttgcaacaattttctctctcatactcac 309  Q
    |||| ||||||||||||||||||||||||||||||    
T  29586023 acaacttttgcaacaattttctctctcatactcac 29586057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 253 - 309
Target Start/End: Complemental strand, 47398511 - 47398459
Alignment:
Q  253 gagaaatgatatttgaacattgacaatttttgcaacaattttctctctcatactcac 309  Q
    |||||||||||||||||||||  || ||||||  |||||||||||||||||||||||    
T  47398511 gagaaatgatatttgaacatt--cattttttg--acaattttctctctcatactcac 47398459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 273 - 309
Target Start/End: Complemental strand, 1852994 - 1852958
Alignment:
Q  273 tgacaatttttgcaacaattttctctctcatactcac 309  Q
    |||||| ||||||||||| ||||||||||||||||||    
T  1852994 tgacaacttttgcaacaactttctctctcatactcac 1852958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 273 - 309
Target Start/End: Original strand, 3603139 - 3603175
Alignment:
Q  273 tgacaatttttgcaacaattttctctctcatactcac 309  Q
    |||||| ||||||||||| ||||||||||||||||||    
T  3603139 tgacaacttttgcaacaactttctctctcatactcac 3603175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 273 - 309
Target Start/End: Complemental strand, 8411761 - 8411725
Alignment:
Q  273 tgacaatttttgcaacaattttctctctcatactcac 309  Q
    |||||| ||||||||||| ||||||||||||||||||    
T  8411761 tgacaacttttgcaacaactttctctctcatactcac 8411725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 273 - 309
Target Start/End: Original strand, 9008253 - 9008289
Alignment:
Q  273 tgacaatttttgcaacaattttctctctcatactcac 309  Q
    |||||| ||||||||||| ||||||||||||||||||    
T  9008253 tgacaacttttgcaacaactttctctctcatactcac 9008289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 273 - 309
Target Start/End: Complemental strand, 33024614 - 33024578
Alignment:
Q  273 tgacaatttttgcaacaattttctctctcatactcac 309  Q
    |||||| ||||||||||| ||||||||||||||||||    
T  33024614 tgacaacttttgcaacaactttctctctcatactcac 33024578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 273 - 309
Target Start/End: Complemental strand, 36577455 - 36577419
Alignment:
Q  273 tgacaatttttgcaacaattttctctctcatactcac 309  Q
    |||||| ||||||||||| ||||||||||||||||||    
T  36577455 tgacaacttttgcaacaactttctctctcatactcac 36577419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 273 - 309
Target Start/End: Complemental strand, 33589273 - 33589237
Alignment:
Q  273 tgacaatttttgcaacaattttctctctcatactcac 309  Q
    |||||| ||||||||||||||||||||||||||||||    
T  33589273 tgacaacttttgcaacaattttctctctcatactcac 33589237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 273 - 309
Target Start/End: Original strand, 34018836 - 34018872
Alignment:
Q  273 tgacaatttttgcaacaattttctctctcatactcac 309  Q
    |||||| ||||||||||||||||||||||||||||||    
T  34018836 tgacaacttttgcaacaattttctctctcatactcac 34018872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 249 - 309
Target Start/End: Original strand, 41520964 - 41521032
Alignment:
Q  249 taaagagaaatgatatttgaacat--------tgacaatttttgcaacaattttctctctcatactcac 309  Q
    ||||||||||||||||||||||||        ||| || ||||||||||||||||||||||||||||||    
T  41520964 taaagagaaatgatatttgaacatccatttagtgataacttttgcaacaattttctctctcatactcac 41521032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 273 - 309
Target Start/End: Complemental strand, 1633933 - 1633897
Alignment:
Q  273 tgacaatttttgcaacaattttctctctcatactcac 309  Q
    |||||| ||||||||||| ||||||||||||||||||    
T  1633933 tgacaacttttgcaacaactttctctctcatactcac 1633897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 273 - 309
Target Start/End: Original strand, 11017833 - 11017869
Alignment:
Q  273 tgacaatttttgcaacaattttctctctcatactcac 309  Q
    |||||| ||||||||||| ||||||||||||||||||    
T  11017833 tgacaacttttgcaacaactttctctctcatactcac 11017869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 273 - 309
Target Start/End: Complemental strand, 11658043 - 11658007
Alignment:
Q  273 tgacaatttttgcaacaattttctctctcatactcac 309  Q
    |||||| ||||||||||| ||||||||||||||||||    
T  11658043 tgacaacttttgcaacaactttctctctcatactcac 11658007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 273 - 309
Target Start/End: Original strand, 16966813 - 16966849
Alignment:
Q  273 tgacaatttttgcaacaattttctctctcatactcac 309  Q
    |||||| ||||||||||| ||||||||||||||||||    
T  16966813 tgacaacttttgcaacaactttctctctcatactcac 16966849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 273 - 309
Target Start/End: Complemental strand, 45529289 - 45529253
Alignment:
Q  273 tgacaatttttgcaacaattttctctctcatactcac 309  Q
    |||||||||||| ||||| ||||||||||||||||||    
T  45529289 tgacaatttttgtaacaactttctctctcatactcac 45529253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 273 - 309
Target Start/End: Complemental strand, 8267863 - 8267827
Alignment:
Q  273 tgacaatttttgcaacaattttctctctcatactcac 309  Q
    |||||||||||||||||| ||||||||||||||||||    
T  8267863 tgacaatttttgcaacaactttctctctcatactcac 8267827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 254 - 304
Target Start/End: Complemental strand, 2689047 - 2688998
Alignment:
Q  254 agaaatgatatttgaacattgacaatttttgcaacaattttctctctcata 304  Q
    ||||||||||||||||||| ||||| ||||||||||| ||||||| |||||    
T  2689047 agaaatgatatttgaacat-gacaacttttgcaacaactttctctttcata 2688998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 250 - 309
Target Start/End: Complemental strand, 8675507 - 8675440
Alignment:
Q  250 aaagagaaatgatatttgaacat--------tgacaatttttgcaacaattttctctctcatactcac 309  Q
    |||||||||||||||||||||||        ||| || ||||||||||||||||||||||||||||||    
T  8675507 aaagagaaatgatatttgaacatccattttgtgataacttttgcaacaattttctctctcatactcac 8675440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 251 - 309
Target Start/End: Original strand, 5042246 - 5042312
Alignment:
Q  251 aagagaaatgatatttgaacat--------tgacaatttttgcaacaattttctctctcatactcac 309  Q
    ||||||||||||||||||||||        |||||||||||||||||| ||| ||||||||||||||    
T  5042246 aagagaaatgatatttgaacatccatttagtgacaatttttgcaacaactttatctctcatactcac 5042312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 273 - 306
Target Start/End: Complemental strand, 5821655 - 5821622
Alignment:
Q  273 tgacaatttttgcaacaattttctctctcatact 306  Q
    |||||||||||||||||||||| |||||||||||    
T  5821655 tgacaatttttgcaacaattttttctctcatact 5821622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 251 - 309
Target Start/End: Complemental strand, 23126416 - 23126350
Alignment:
Q  251 aagagaaatgatatttgaacat--------tgacaatttttgcaacaattttctctctcatactcac 309  Q
    ||||||||||||||||||||||        |||||| |||||||||||||||||||| |||||||||    
T  23126416 aagagaaatgatatttgaacatccatttagtgacaacttttgcaacaattttctctcccatactcac 23126350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 273 - 309
Target Start/End: Complemental strand, 21064269 - 21064233
Alignment:
Q  273 tgacaatttttgcaacaattttctctctcatactcac 309  Q
    |||||| ||||||||||| ||||||||||||||||||    
T  21064269 tgacaacttttgcaacaactttctctctcatactcac 21064233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 273 - 309
Target Start/End: Complemental strand, 35099048 - 35099012
Alignment:
Q  273 tgacaatttttgcaacaattttctctctcatactcac 309  Q
    |||||| ||||||||||| ||||||||||||||||||    
T  35099048 tgacaacttttgcaacaactttctctctcatactcac 35099012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0321 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0321
Description:

Target: scaffold0321; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 273 - 309
Target Start/End: Original strand, 19664 - 19700
Alignment:
Q  273 tgacaatttttgcaacaattttctctctcatactcac 309  Q
    |||||| ||||||||||| ||||||||||||||||||    
T  19664 tgacaacttttgcaacaactttctctctcatactcac 19700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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