View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6433_high_1 (Length: 377)
Name: NF6433_high_1
Description: NF6433
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6433_high_1 |
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Alignment Details
Target: chr8 (Bit Score: 340; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 18 - 369
Target Start/End: Original strand, 43230229 - 43230580
Alignment:
| Q |
18 |
actataagcttaaaaggtcactgccgtatcaaattccaaacttcaaattaatttaagttgcatatcaaagagatcaattaatctgaaactgtaattttga |
117 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
43230229 |
actataggcttaaaaggtcactgccgtatcaaattccaaacttcaaattaatttaagttgcatatcaaagagatcgattaatctgaaactgtaattttga |
43230328 |
T |
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| Q |
118 |
tgacatagcaaagaaaaatattactcctatgtacaaggtagaagttaagaagcaattgttctgttttgcctattgagttctttatagaagttgttaatga |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43230329 |
tgacatagcaaagaaaaatattactcctatgtacaaggtagaagttaagaagcaattgttctgttttgcctattgagttctttatagaagttgttaatga |
43230428 |
T |
|
| Q |
218 |
attcttcagctgcgatgtccacttgatgacaattcccttcgtcttcgagcgtgaaaggcgccaaaggagaattagccacagcctctaccttttcattatt |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43230429 |
attcttcagctgcgatgtccacttgatgacaattcccttcgtcttcgagcgtgaaaggcgccaaaggagaattagccacagcctctaccttttcattatt |
43230528 |
T |
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| Q |
318 |
caacatcatttcaataaataccttttgaacagcaatattattattgatgatg |
369 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
43230529 |
caacatcatttcaataaataccttttgaacagcaatattattattcatgatg |
43230580 |
T |
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