View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6433_low_3 (Length: 352)
Name: NF6433_low_3
Description: NF6433
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6433_low_3 |
 | |
|
| [»] scaffold0005 (2 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 318; Significance: 1e-179; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 11 - 344
Target Start/End: Complemental strand, 9788052 - 9787719
Alignment:
| Q |
11 |
atcatcagataggaaatattgatgctgattctgcttggtgggatgctaagataagggttagtactacgaactttaaattttattcattgaaaataaatag |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9788052 |
atcatcagataggaaatattgatgctgattctgcttggtgggatgctaagataagggttagtactacgaactttaaattttattcattgaaaataaatag |
9787953 |
T |
|
| Q |
111 |
gagaatttagatagcctaaattttatttatttttattggttacacaggagaatgtgaaatatgcgaaatttcgatttcaaggtttggaatttcgtgatga |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
9787952 |
gagaatttagatagcctaaattttatttatttttattggttacacaggagaatgtgaaatatgcaaaatttcgatttcaaggtttggaatttcgtgatga |
9787853 |
T |
|
| Q |
211 |
attggaattcatatttggagagattgtggcaactagtcaatgtgcatgggcaccagctatgggtgtgccattagagtctactggaaaaaatactattgca |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||| |||| |
|
|
| T |
9787852 |
attggaattcatatttggagagattgtggcaactagtcaatgtgcatgggcaccagctatgggtgtgccattagagtctattagaaaaaatactactgca |
9787753 |
T |
|
| Q |
311 |
gatgtggctcatgaaattattgaatctgatgatg |
344 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
9787752 |
gatgtggctcatgaaattattgaatctgatgatg |
9787719 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 11 - 344
Target Start/End: Original strand, 3589743 - 3590076
Alignment:
| Q |
11 |
atcatcagataggaaatattgatgctgattctgcttggtgggatgctaagataagggttagtactacgaactttaaattttattcattgaaaataaatag |
110 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||| ||| ||| |
|
|
| T |
3589743 |
atcatcagataggaaatattgatgttgattctgcttggtgggatgctaagataagggttagtactatgaactttaatttttattcattgaaagtaagtag |
3589842 |
T |
|
| Q |
111 |
gagaatttagatagcctaaattttatttatttttattggttacacaggagaatgtgaaatatgcgaaatttcgatttcaaggtttggaatttcgtgatga |
210 |
Q |
| |
|
|||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||| |
|
|
| T |
3589843 |
gagaatttagatagcctaaattttatctaattttattggttacacaggagaatgtgaaatatgcgaaatttcgatttcaaggtttgaaatttcgagatga |
3589942 |
T |
|
| Q |
211 |
attggaattcatatttggagagattgtggcaactagtcaatgtgcatgggcaccagctatgggtgtgccattagagtctactggaaaaaatactattgca |
310 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| || |
|
|
| T |
3589943 |
attggaattcatatttggagagattgtggcaactagtcaatgtgcatgggcaccagctatgggtgtgccattagagtctgctggaaaaaatactaccaca |
3590042 |
T |
|
| Q |
311 |
gatgtggctcatgaaattattgaatctgatgatg |
344 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||| |
|
|
| T |
3590043 |
gatgtggcccatgaaattattgaatctgatgatg |
3590076 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 143 - 222
Target Start/End: Complemental strand, 19607587 - 19607508
Alignment:
| Q |
143 |
ttattggttacacaggagaatgtgaaatatgcgaaatttcgatttcaaggtttggaatttcgtgatgaattggaattcat |
222 |
Q |
| |
|
|||||||||| || |||||||| |||||| | |||||||| |||||||| || ||||||||||||||||| |||||||| |
|
|
| T |
19607587 |
ttattggttatgcacgagaatgtaaaatattcaaaatttcgttttcaaggattagaatttcgtgatgaattagaattcat |
19607508 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 155 - 278
Target Start/End: Complemental strand, 4576979 - 4576856
Alignment:
| Q |
155 |
caggagaatgtgaaatatgcgaaatttcgatttcaaggtttggaatttcgtgatgaattggaattcatatttggagagattgtggcaactagtcaatgtg |
254 |
Q |
| |
|
|||||||||||||| |||| || |||| | |||||| ||||||||| | || |||||| |||| |||||||| |||||||||||||| || ||||| |
|
|
| T |
4576979 |
caggagaatgtgaactatgaaaattttcaaagtcaaggattggaattttgcgaggaattgaaatttatatttggggagattgtggcaacaagccaatgcc |
4576880 |
T |
|
| Q |
255 |
catgggcaccagctatgggtgtgc |
278 |
Q |
| |
|
|||| |||||||| |||| |||| |
|
|
| T |
4576879 |
aatggacaccagctttgggggtgc |
4576856 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 294; Significance: 1e-165; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 11 - 344
Target Start/End: Original strand, 44506151 - 44506484
Alignment:
| Q |
11 |
atcatcagataggaaatattgatgctgattctgcttggtgggatgctaagataagggttagtactacgaactttaaattttattcattgaaaataaatag |
110 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||| ||||||| |
|
|
| T |
44506151 |
atcatcatataggaaatattgatgctgattctgcttggtgggatgctaagataagggttagtactatgaactttaatttttattcattgaaagtaaatag |
44506250 |
T |
|
| Q |
111 |
gagaatttagatagcctaaattttatttatttttattggttacacaggagaatgtgaaatatgcgaaatttcgatttcaaggtttggaatttcgtgatga |
210 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
44506251 |
gagaatttagatagcctaaattttatctatttttattggttacacatgagaatgtgaaatatgcgaaatttcgatttcaaggtttggaattttgtgatga |
44506350 |
T |
|
| Q |
211 |
attggaattcatatttggagagattgtggcaactagtcaatgtgcatgggcaccagctatgggtgtgccattagagtctactggaaaaaatactattgca |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
44506351 |
attggaattcatatttggagagattgtggcaactagtcaatgtgcatgtgcaccagctatgggtgtgccattagagtctactggaaaaaatactactgca |
44506450 |
T |
|
| Q |
311 |
gatgtggctcatgaaattattgaatctgatgatg |
344 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||| |
|
|
| T |
44506451 |
gatgtggctcgtgaaattattgaatctgatgatg |
44506484 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 1 - 343
Target Start/End: Complemental strand, 18176888 - 18176545
Alignment:
| Q |
1 |
tgagatggacatcatcagataggaaatattgatgctgattctgcttggtgggatgctaagataagggttagtactacgaactttaaatttt-attcattg |
99 |
Q |
| |
|
||||||||| |||| ||||||||||||||||||| |||| || | |||| ||||||||||||||| | |||| || || || |||||| || || || |
|
|
| T |
18176888 |
tgagatgga-atcaccagataggaaatattgatgttgatgcttcatggtaggatgctaagataagactgagtattataaatattgaatttttatccagtg |
18176790 |
T |
|
| Q |
100 |
aaaata-aataggagaatttagatagcctaaattttatttatttttattggttacacaggagaatgtgaaatatgcgaaatttcgatttcaaggtttgga |
198 |
Q |
| |
|
||||| |||| || ||||| | | | || ||| |||||| || |||||||||| ||||||||||| |||||||| |||||||| | ||||||||| || |
|
|
| T |
18176789 |
aaaattgaataagataatttggtttgtctgaatattatttcttgttattggttatgcaggagaatgtcaaatatgcaaaatttcgctatcaaggtttaga |
18176690 |
T |
|
| Q |
199 |
atttcgtgatgaattggaattcatatttggagagattgtggcaactagtcaatgtgcatgggcaccagctatgggtgtgccattagagtctactggaaaa |
298 |
Q |
| |
|
||||| ||||||| || || ||||||||||||| ||||||| |||||| | |||| |||| ||| ||||||||||||| || | || ||| ||| |
|
|
| T |
18176689 |
atttcatgatgaactgaaaatcatatttggagatgcaatggcaacaagtcaacgccaatggtcacctgctttgggtgtgccatttgattgtagtggcaaa |
18176590 |
T |
|
| Q |
299 |
aatactattgcagatgtggctcatgaaattattgaatctgatgat |
343 |
Q |
| |
|
||||||| | |||||||| | || ||||| ||||| || |||||| |
|
|
| T |
18176589 |
aatactactacagatgtgccacaagaaataattgactccgatgat |
18176545 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 11 - 343
Target Start/End: Original strand, 24956232 - 24956566
Alignment:
| Q |
11 |
atcatcagataggaaatattgatgctgattctgcttggtgggatgctaagataagggttagtactacgaactttaaatttt-attcattgaaaata-aat |
108 |
Q |
| |
|
|||| ||||||||||||||||||| |||| || | |||||||||||||||||||| || ||| ||| || || | |||| || | ||||||| ||| |
|
|
| T |
24956232 |
atcaccagataggaaatattgatgttgatgcttcatggtgggatgctaagataagagtgagtgttacaaatattgattttttatcccgtgaaaattgaat |
24956331 |
T |
|
| Q |
109 |
aggagaatttagatagcctaaattttatttatttttattggttacacaggagaatgtgaaatatgcgaaatttcgatttcaaggtttggaatttcgtgat |
208 |
Q |
| |
|
| |||||||| | | | || || |||||| || ||||| |||| |||| |||||| |||||||| |||||||| | ||||||||| |||||||||||| |
|
|
| T |
24956332 |
aagagaatttggtttgtctgaacattatttcttgttattcgttatgcaggggaatgtaaaatatgcaaaatttcgctatcaaggtttagaatttcgtgat |
24956431 |
T |
|
| Q |
209 |
gaattggaattcatatttggagagattgtggcaactagtcaatgtgcatgggcaccagctatgggtgtgccattagagtctactggaaaaaatactattg |
308 |
Q |
| |
|
||| |||||||||||||||| || |||||||| |||||| | | || |||| ||| ||||||| ||||| || |||| || |||||||||| | |
|
|
| T |
24956432 |
gaactggaattcatatttggggatgcagtggcaacaagtcaacgccaacggtcacctgctttgggtgtaccatttgaatctagtgacaaaaatactacta |
24956531 |
T |
|
| Q |
309 |
cagatgtggctcatgaaattattgaatctgatgat |
343 |
Q |
| |
|
|||||||| | || ||||| ||||| ||||||||| |
|
|
| T |
24956532 |
cagatgtgccacaagaaataattgactctgatgat |
24956566 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 155 - 252
Target Start/End: Original strand, 29564316 - 29564413
Alignment:
| Q |
155 |
caggagaatgtgaaatatgcgaaatttcgatttcaaggtttggaatttcgtgatgaattggaattcatatttggagagattgtggcaactagtcaatg |
252 |
Q |
| |
|
|||||||||||||||||||| ||||||| | |||| | ||| |||||||||| |||||| |||| |||||||||||||||||| |||| |||||||| |
|
|
| T |
29564316 |
caggagaatgtgaaatatgcaaaatttcaaagtcaaagattgaaatttcgtgaggaattgaaatttatatttggagagattgtgacaacaagtcaatg |
29564413 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 19 - 59
Target Start/End: Original strand, 29564186 - 29564226
Alignment:
| Q |
19 |
ataggaaatattgatgctgattctgcttggtgggatgctaa |
59 |
Q |
| |
|
|||||||||||||||| |||| ||||||||||||| ||||| |
|
|
| T |
29564186 |
ataggaaatattgatgatgatcctgcttggtgggaggctaa |
29564226 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 267; Significance: 1e-149; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 11 - 344
Target Start/End: Complemental strand, 10012921 - 10012587
Alignment:
| Q |
11 |
atcatcagataggaaatattgatgctgattctgcttggtgggatgctaagataagggttagtactacgaactttaaattttattcattgaaaataaatag |
110 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||| |||| ||||||||||||| |||||| ||||||||| ||||||||||||||| ||||||| |
|
|
| T |
10012921 |
atcatcagataggaaatattgatgttgattctgcttggtgcgatgataagataagggttggtactatgaactttaatttttattcattgaaagtaaatag |
10012822 |
T |
|
| Q |
111 |
gagaatttagatagcctaaattttatttatttttattggttacacaggagaatgtgaaatatgcgaaatttcgatttcaaggtttggaatttcgtgatga |
210 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||| |
|
|
| T |
10012821 |
gagaatttagatagcctaaattttatctatttttattggttacacaggagaatgtgaaatatgagaaatttcgatttcaaggtttgaaatttcgtgatga |
10012722 |
T |
|
| Q |
211 |
attggaattcatatttggagagattgtggcaactagtcaatgtgcatgggcaccagctatgggtgtgccattagagtctact-ggaaaaaatactattgc |
309 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| | ||||||||||||||| |
|
|
| T |
10012721 |
attgaaattcatatttggagagattgtggcaactagtcaatgtgcatgggcaccaactatgggtgtgccattagagtctactagaaaaaaatactattgc |
10012622 |
T |
|
| Q |
310 |
agatgtggctcatgaaattattgaatctgatgatg |
344 |
Q |
| |
|
||||||||| |||||||||||||||||||| |||| |
|
|
| T |
10012621 |
agatgtggcccatgaaattattgaatctgacgatg |
10012587 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 11 - 344
Target Start/End: Complemental strand, 10020062 - 10019728
Alignment:
| Q |
11 |
atcatcagataggaaatattgatgctgattctgcttggtgggatgctaagataagggttagtactacgaactttaaattttattcattgaaaataaatag |
110 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||| |||| ||||||||||||| |||||| ||||||||| ||||||||||||||| ||||||| |
|
|
| T |
10020062 |
atcatcagataggaaatattgatgttgattctgcttggtgcgatgataagataagggttggtactatgaactttaatttttattcattgaaagtaaatag |
10019963 |
T |
|
| Q |
111 |
gagaatttagatagcctaaattttatttatttttattggttacacaggagaatgtgaaatatgcgaaatttcgatttcaaggtttggaatttcgtgatga |
210 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||| |
|
|
| T |
10019962 |
gagaatttagatagcctaaattttatctatttttattggttacacaggagaatgtgaaatatgagaaatttcgatttcaaggtttgaaatttcgtgatga |
10019863 |
T |
|
| Q |
211 |
attggaattcatatttggagagattgtggcaactagtcaatgtgcatgggcaccagctatgggtgtgccattagagtctact-ggaaaaaatactattgc |
309 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| | ||||||||||||||| |
|
|
| T |
10019862 |
attgaaattcatatttggagagattgtggcaactagtcaatgtgcatgggcaccaactatgggtgtgccattagagtctactagaaaaaaatactattgc |
10019763 |
T |
|
| Q |
310 |
agatgtggctcatgaaattattgaatctgatgatg |
344 |
Q |
| |
|
||||||||| |||||||||||||||||||| |||| |
|
|
| T |
10019762 |
agatgtggcccatgaaattattgaatctgacgatg |
10019728 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 155 - 336
Target Start/End: Original strand, 14641023 - 14641204
Alignment:
| Q |
155 |
caggagaatgtgaaatatgcgaaatttcgatttcaaggtttggaatttcgtgatgaattggaattcatatttggagagattgtggcaactagtcaatgtg |
254 |
Q |
| |
|
|||||||||||||||||||| ||||||| | |||||| |||||||||||||| |||||| |||| |||||||||||||||||| |||| |||||||| |
|
|
| T |
14641023 |
caggagaatgtgaaatatgcaaaatttcaaagtcaaggattggaatttcgtgaggaattgaaatttatatttggagagattgtgacaacaagtcaatgcc |
14641122 |
T |
|
| Q |
255 |
catgggcaccagctatgggtgtgccattagagtctactggaaaaaatactattgcagatgtggctcatgaaattattgaatc |
336 |
Q |
| |
|
|||| |||||||| | || |||||| || |||| ||| |||||| |||||| |||||| | | |||||||||||||| |
|
|
| T |
14641123 |
aatggacaccagctttaggggtgccacatgaatctagtggcaaaaatgctattgatgatgtgccactagaaattattgaatc |
14641204 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 155 - 252
Target Start/End: Original strand, 26110467 - 26110564
Alignment:
| Q |
155 |
caggagaatgtgaaatatgcgaaatttcgatttcaaggtttggaatttcgtgatgaattggaattcatatttggagagattgtggcaactagtcaatg |
252 |
Q |
| |
|
|||||||||||||||||||| ||||||| | |||||| |||||||||||||| |||||| |||| |||||||||||||||||| |||| ||| |||| |
|
|
| T |
26110467 |
caggagaatgtgaaatatgcaaaatttcaaagtcaaggattggaatttcgtgaggaattgaaatttatatttggagagattgtgacaacaagttaatg |
26110564 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 19 - 59
Target Start/End: Original strand, 14640893 - 14640933
Alignment:
| Q |
19 |
ataggaaatattgatgctgattctgcttggtgggatgctaa |
59 |
Q |
| |
|
||||||||| ||||||||||| ||||||||||||| ||||| |
|
|
| T |
14640893 |
ataggaaatgttgatgctgatcctgcttggtgggaggctaa |
14640933 |
T |
|
Back To:
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Target: chr1 (Bit Score: 92; Significance: 1e-44; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 219 - 342
Target Start/End: Complemental strand, 38318695 - 38318572
Alignment:
| Q |
219 |
tcatatttggagagattgtggcaactagtcaatgtgcatgggcaccagctatgggtgtgccattagagtctactggaaaaaatactattgcagatgtggc |
318 |
Q |
| |
|
|||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||| |||| ||||||| |
|
|
| T |
38318695 |
tcatatttggggagattatggcaactagtcaatgtgcatgggcaccagctatgggtgtgacattagaatctactggaaaaaatactactgcatatgtggc |
38318596 |
T |
|
| Q |
319 |
tcatgaaattattgaatctgatga |
342 |
Q |
| |
|
|||||||||||||||||| |||| |
|
|
| T |
38318595 |
gcatgaaattattgaatctaatga |
38318572 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 15 - 343
Target Start/End: Original strand, 32604339 - 32604669
Alignment:
| Q |
15 |
tcagataggaaatattgatgctgattctgcttggtgggatgctaagataagggttagtactacgaa-ctttaaattttattcattgaaaa-taaatagga |
112 |
Q |
| |
|
||||||||||||||||||||||||| || | ||||||||||||||||||||||| |||| || || ||||| |||||| | |||||| | ||||| | |
|
|
| T |
32604339 |
tcagataggaaatattgatgctgatgcttcatggtgggatgctaagataagggtgagtattataaatatttaacttttatcctgtgaaaattgaatagta |
32604438 |
T |
|
| Q |
113 |
gaatttagatagcctaaattttatttatttttattggttacacaggagaatgtgaaatatgcgaaatttcgatttcaaggtttggaatttcgtgatgaat |
212 |
Q |
| |
|
|||||| | | | ||||| || ||| || |||||||||| ||||||||||| |||||| |||||||| | |||||||||||| |||| |||||||| |
|
|
| T |
32604439 |
gaatttcgttttcataaatattttttcttgttattggttatgcaggagaatgtaaaatatttaaaatttcgttatcaaggtttggagtttcttgatgaat |
32604538 |
T |
|
| Q |
213 |
tggaattcatatttggagagattgtggcaactagtcaatgtgcatgggcaccagctatgggtgtgccattagagtctactggaaaaaatactattgcaga |
312 |
Q |
| |
|
|||||||||||| | | || |||||||| |||||| |||| |||| ||| |||||||||||||||| |||| ||| |||||||||| | || | |
|
|
| T |
32604539 |
tggaattcatatatagggatgcagtggcaacaagtcaacaccaatggacaccggctttgggtgtgccattagaatctaatggcaaaaatactactacaaa |
32604638 |
T |
|
| Q |
313 |
tgtggctcatgaaattattgaatctgatgat |
343 |
Q |
| |
|
|||| | || ||||| ||||| ||||||||| |
|
|
| T |
32604639 |
tgtgccacaagaaataattgactctgatgat |
32604669 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 67; Significance: 1e-29; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 15 - 343
Target Start/End: Complemental strand, 21023439 - 21023109
Alignment:
| Q |
15 |
tcagataggaaatattgatgctgattctgcttggtgggatgctaagataagggttagtactacgaac-tttaaattttattcattgaaaata-aatagga |
112 |
Q |
| |
|
||||||||||||||||||||||||| | | | ||||||||||||||||||| | |||| || || ||||| |||||||| ||||||| ||||| | |
|
|
| T |
21023439 |
tcagataggaaatattgatgctgatgtttcatcgtgggatgctaagataaggctgagtattataaatatttaatttttattctgtgaaaattgaatagta |
21023340 |
T |
|
| Q |
113 |
gaatttagatagcctaaattttatttatttttattggttacacaggagaatgtgaaatatgcgaaatttcgatttcaaggtttggaatttcgtgatgaat |
212 |
Q |
| |
|
|||||| | | | ||||| || ||| || |||||||||| ||||||||||| |||||| |||||||| | |||||||||||| |||| |||||||| |
|
|
| T |
21023339 |
gaatttcgttttcataaatattttttcttgttattggttatgcaggagaatgtaaaatatttaaaatttcgttatcaaggtttggagtttcttgatgaat |
21023240 |
T |
|
| Q |
213 |
tggaattcatatttggagagattgtggcaactagtcaatgtgcatgggcaccagctatgggtgtgccattagagtctactggaaaaaatactattgcaga |
312 |
Q |
| |
|
|||||||||||| | | || |||||||| |||||| |||| |||| ||| |||||||||||||||| |||| ||| |||||||||| | || | |
|
|
| T |
21023239 |
tggaattcatatatagggatgcagtggcaacaagtcaacaccaatggacaccggctttgggtgtgccattagaatctaatggcaaaaatactactacaaa |
21023140 |
T |
|
| Q |
313 |
tgtggctcatgaaattattgaatctgatgat |
343 |
Q |
| |
|
|||| | || ||||| ||||| ||||||||| |
|
|
| T |
21023139 |
tgtgccacaagaaataattgactctgatgat |
21023109 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 155 - 252
Target Start/End: Original strand, 7230198 - 7230295
Alignment:
| Q |
155 |
caggagaatgtgaaatatgcgaaatttcgatttcaaggtttggaatttcgtgatgaattggaattcatatttggagagattgtggcaactagtcaatg |
252 |
Q |
| |
|
|||||||||||||||||||| ||||||| | |||||| ||| |||||||||| |||||| |||| |||||||||||||||||| |||| |||||||| |
|
|
| T |
7230198 |
caggagaatgtgaaatatgcaaaatttcaaagtcaaggattgaaatttcgtgaggaattgaaatttatatttggagagattgtgacaacaagtcaatg |
7230295 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 53
Target Start/End: Original strand, 7230068 - 7230102
Alignment:
| Q |
19 |
ataggaaatattgatgctgattctgcttggtggga |
53 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||| |
|
|
| T |
7230068 |
ataggaaatattgatgctgatcctgcttggtggga |
7230102 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0005 (Bit Score: 62; Significance: 1e-26; HSPs: 2)
Name: scaffold0005
Description:
Target: scaffold0005; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 155 - 336
Target Start/End: Complemental strand, 176269 - 176088
Alignment:
| Q |
155 |
caggagaatgtgaaatatgcgaaatttcgatttcaaggtttggaatttcgtgatgaattggaattcatatttggagagattgtggcaactagtcaatgtg |
254 |
Q |
| |
|
|||||||||||||||||||| ||||||| | |||||| |||||||||||||| |||||| |||| |||||||||||||||||| |||| |||||||| |
|
|
| T |
176269 |
caggagaatgtgaaatatgcaaaatttcaaagtcaaggattggaatttcgtgaggaattgaaatttatatttggagagattgtgacaacaagtcaatgcc |
176170 |
T |
|
| Q |
255 |
catgggcaccagctatgggtgtgccattagagtctactggaaaaaatactattgcagatgtggctcatgaaattattgaatc |
336 |
Q |
| |
|
|||| |||||||| | || |||||| || |||| ||| |||||| |||||| |||||| | | |||||||||||||| |
|
|
| T |
176169 |
aatggacaccagctttaggggtgccacatgaatctagtggcaaaaatgctattgatgatgtgccactagaaattattgaatc |
176088 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0005; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 19 - 59
Target Start/End: Complemental strand, 176399 - 176359
Alignment:
| Q |
19 |
ataggaaatattgatgctgattctgcttggtgggatgctaa |
59 |
Q |
| |
|
||||||||| ||||||||||| ||||||||||||| ||||| |
|
|
| T |
176399 |
ataggaaatgttgatgctgatcctgcttggtgggaggctaa |
176359 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 156 - 228
Target Start/End: Original strand, 6790379 - 6790451
Alignment:
| Q |
156 |
aggagaatgtgaaatatgcgaaatttcgatttcaaggtttggaatttcgtgatgaattggaattcatatttgg |
228 |
Q |
| |
|
||||||||| |||| ||| | |||||||| |||||| || |||||||||||||| |||||| ||||||||| |
|
|
| T |
6790379 |
aggagaatgcaaaatttgcaagatttcgatatcaaggattagaatttcgtgatgagttggaacacatatttgg |
6790451 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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