View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6433_low_5 (Length: 300)
Name: NF6433_low_5
Description: NF6433
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6433_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 176; Significance: 8e-95; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 176; E-Value: 8e-95
Query Start/End: Original strand, 21 - 212
Target Start/End: Complemental strand, 17394196 - 17394005
Alignment:
| Q |
21 |
aaagctcgtcctattggcgatgagctttattttgatgatggctggaagcaatttagagaggaaaattctttagaggaggatgatttccttgtttttacac |
120 |
Q |
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| T |
17394196 |
aaagctcgtcttattggcgatgagctttattttgacggtggctggaagcaatttagagaggaaaattctttagaggaggatgatttccttgtttttacac |
17394097 |
T |
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| Q |
121 |
atattgaaaataccgtattcaggttcaaaattcttgaactatcatcaatgtgtgaaaagaagaaggtaagtgtcgtggaggaaaataacaat |
212 |
Q |
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| T |
17394096 |
atattgaaaataccgtattcaggttcaaaattcttgaactatcatcgatgtgtgaaaagaagaaggtaagtgtcgtggaggaaaataacaat |
17394005 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 21 - 180
Target Start/End: Original strand, 17454633 - 17454792
Alignment:
| Q |
21 |
aaagctcgtcctattggcgatgagctttattttgatgatggctggaagcaatttagagaggaaaattctttagaggaggatgatttccttgtttttacac |
120 |
Q |
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| T |
17454633 |
aaagcgcgtcgtattggtgacgagttctattttgatgatggctggaagaaatttagacaagaaaattgtttagtggagaatgacttccttgtttttactc |
17454732 |
T |
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| Q |
121 |
atattgaaaataccgtattcaggttcaaaattcttgaactatcatcaatgtgtgaaaaga |
180 |
Q |
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| T |
17454733 |
atattgaaaacaatgtattcaaattcaaaattcttgaactatcatcaatgtgtgaaaaga |
17454792 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 45 - 207
Target Start/End: Original strand, 17460874 - 17461036
Alignment:
| Q |
45 |
ctttattttgatgatggctggaagcaatttagagaggaaaattctttagaggaggatgatttccttgtttttacacatattgaaaataccgtattcaggt |
144 |
Q |
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| T |
17460874 |
ctttattttgatgatggttggaaactattcagagaagaaaattctttagaggacaatgacttccttgttttcacgcatattgaaaacaatgtattcaagt |
17460973 |
T |
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| Q |
145 |
tcaaaattcttgaactatcatcaatgtgtgaaaagaagaaggtaagtgtcgtggaggaaaata |
207 |
Q |
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| T |
17460974 |
tcaaaatccttgaactatcatcaatgtgtcaaaagatgaaggtaatggacgaggaggaaaata |
17461036 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 43 - 189
Target Start/End: Complemental strand, 40235757 - 40235611
Alignment:
| Q |
43 |
agctttattttgatgatggctggaagcaatttagagaggaaaattctttagaggaggatgatttccttgtttttacacatattgaaaataccgtattcag |
142 |
Q |
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| T |
40235757 |
agctttattttgatgatggttggaaactattcagagaagaaaattctttagaggacaatgacttccttgttttcagacatattgaaaacaatgtattcaa |
40235658 |
T |
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| Q |
143 |
gttcaaaattcttgaactatcatcaatgtgtgaaaagaagaaggtaa |
189 |
Q |
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| T |
40235657 |
gttcaaaatttatgaactatcatcaatgtgtaaaaagatgaaggtaa |
40235611 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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