View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6433_low_6 (Length: 251)
Name: NF6433_low_6
Description: NF6433
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6433_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 182; Significance: 2e-98; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 3638135 - 3638382
Alignment:
| Q |
1 |
ttctttcataaaatttatgcactgtgctctttataagtaagtaaatacgtagtttatttttattgtgaaacaaagtgtagtccatgaatgtttttcatga |
100 |
Q |
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| T |
3638135 |
ttctttcataaaatttatgcactgtgctctttaaaagtaagtaaatacgtggtttatttttattgtgaaacaaagtgtagtccatgaatgcttttcatga |
3638234 |
T |
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| Q |
101 |
ttttatgctaagatttacatgttgtttttgcaggaattactagtcactaattcga--------ttaacaattataaaataaaaagaaataaacacaacag |
192 |
Q |
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| T |
3638235 |
ttttatgctaagatttacatgttgtttttgcaggaattactagttactaattcgattaacaatttaacaattataaaataaaaagaaataaacacaacag |
3638334 |
T |
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| Q |
193 |
ctaacaatattaggatatgtactgtnnnnnnntattaggataagtata |
240 |
Q |
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| T |
3638335 |
ctaacaatattaggatatgtactgtaaaaaaatattaggataagtata |
3638382 |
T |
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