View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6433_low_7 (Length: 248)

Name: NF6433_low_7
Description: NF6433
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6433_low_7
NF6433_low_7
[»] chr5 (23 HSPs)
chr5 (1-239)||(10746981-10747219)
chr5 (4-239)||(10604760-10604995)
chr5 (8-231)||(10216723-10216946)
chr5 (23-239)||(10716906-10717122)
chr5 (23-239)||(10740665-10740881)
chr5 (4-232)||(11048630-11048858)
chr5 (4-239)||(10611718-10611953)
chr5 (4-239)||(10565035-10565270)
chr5 (6-221)||(10581014-10581228)
chr5 (5-239)||(10763099-10763333)
chr5 (5-237)||(10558911-10559143)
chr5 (5-239)||(10588396-10588630)
chr5 (26-234)||(19605836-19606044)
chr5 (160-237)||(10652170-10652247)
chr5 (160-239)||(7193169-7193248)
chr5 (160-239)||(10660051-10660130)
chr5 (23-73)||(9836460-9836510)
chr5 (150-238)||(9836295-9836383)
chr5 (26-73)||(9850832-9850879)
chr5 (4-82)||(7193013-7193091)
chr5 (5-81)||(9825109-9825186)
chr5 (4-73)||(10660217-10660286)
chr5 (198-239)||(35755060-35755101)
[»] chr6 (5 HSPs)
chr6 (6-239)||(12899580-12899813)
chr6 (23-239)||(12948671-12948887)
chr6 (6-236)||(12958088-12958318)
chr6 (6-239)||(12907200-12907433)
chr6 (6-239)||(12932289-12932522)
[»] scaffold0692 (1 HSPs)
scaffold0692 (6-239)||(7303-7536)
[»] chr2 (1 HSPs)
chr2 (6-239)||(17923369-17923602)
[»] chr3 (2 HSPs)
chr3 (131-238)||(31467129-31467236)
chr3 (198-239)||(1153992-1154033)
[»] chr7 (1 HSPs)
chr7 (198-239)||(29623031-29623072)


Alignment Details
Target: chr5 (Bit Score: 235; Significance: 1e-130; HSPs: 23)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 10747219 - 10746981
Alignment:
Q  1 tatagattacaaagttcaggagtttaaagctctagttttttattacatcaaaaatggaagcttagaacaatggttgcatcctgagtttttaaatgaagag 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10747219 tatagattacaaagttcaggagtttaaagctctagttttttattacataaaaaatggaagcttagaacaatggttgcatcctgagtttttaaatgaagag 10747120  T
Q  101 catccaaaaacgttagaccttggccacagattaaacatcattatcgatgttgcttcaacattacattatcttcaccaagaatgtgagcaattagtcattc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10747119 catccaaaaacgttagaccttggccacagattaaacatcattatcgatgttgcttcaacattacattatcttcaccaagaatgtgagcaattagtcattc 10747020  T
Q  201 actgtgatctcaagccaagcaatgtccttcttgatgatg 239  Q
    |||||||||||||||||||||||||||||||||||||||    
T  10747019 actgtgatctcaagccaagcaatgtccttcttgatgatg 10746981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 4 - 239
Target Start/End: Original strand, 10604760 - 10604995
Alignment:
Q  4 agattacaaagttcaggagtttaaagctctagttttttattacatcaaaaatggaagcttagaacaatggttgcatcctgagtttttaaatgaagagcat 103  Q
    ||||||||||| ||| || |||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||| ||||||||| ||||| |    
T  10604760 agattacaaaggtcaagaatttaaagctctagtttttgattacatgaaaaatggaagcttagaacaatggttgcatcctgagattttaaatgcagagcct 10604859  T
Q  104 ccaaaaacgttagaccttggccacagattaaacatcattatcgatgttgcttcaacattacattatcttcaccaagaatgtgagcaattagtcattcact 203  Q
    |||| |||||| ||||||||  | ||||| ||||||||| | |||||||||||  |||| ||||||||||| |||||||||||||||||||||||||| |    
T  10604860 ccaacaacgttggaccttggtaaaagatttaacatcatttttgatgttgcttctgcattgcattatcttcatcaagaatgtgagcaattagtcattcatt 10604959  T
Q  204 gtgatctcaagccaagcaatgtccttcttgatgatg 239  Q
    ||||||| ||||||||||||||||| ||||||||||    
T  10604960 gtgatctaaagccaagcaatgtcctacttgatgatg 10604995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 8 - 231
Target Start/End: Complemental strand, 10216946 - 10216723
Alignment:
Q  8 tacaaagttcaggagtttaaagctctagttttttattacatcaaaaatggaagcttagaacaatggttgcatcctgagtttttaaatgaagagcatccaa 107  Q
    ||||||| ||| || |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||  |||||||||||    
T  10216946 tacaaaggtcaagaatttaaagctctagttttttattacatgaaaaatggaagcttagaacaatggttgcatcctgagattttaaattcagagcatccaa 10216847  T
Q  108 aaacgttagaccttggccacagattaaacatcattatcgatgttgcttcaacattacattatcttcaccaagaatgtgagcaattagtcattcactgtga 207  Q
    |||| || |||||||| || || ||||||||||||||||||||||||||  ||||||||||||| || |||||||||||||||||  | ||||| |||||    
T  10216846 aaacattggaccttggtcataggttaaacatcattatcgatgttgcttcggcattacattatctgcatcaagaatgtgagcaattgattattcattgtga 10216747  T
Q  208 tctcaagccaagcaatgtccttct 231  Q
    ||| |||||||||||||| |||||    
T  10216746 tctaaagccaagcaatgttcttct 10216723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 23 - 239
Target Start/End: Complemental strand, 10717122 - 10716906
Alignment:
Q  23 tttaaagctctagttttttattacatcaaaaatggaagcttagaacaatggttgcatcctgagtttttaaatgaagagcatccaaaaacgttagaccttg 122  Q
    |||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||| |||| ||||||||| ||| ||||||| ||| || |||||||    
T  10717122 tttaaagctctagtttttgattacatgaaaaatggaagcttagaacaatggttgcatcttgagattttaaatgcagatcatccaagaacattggaccttg 10717023  T
Q  123 gccacagattaaacatcattatcgatgttgcttcaacattacattatcttcaccaagaatgtgagcaattagtcattcactgtgatctcaagccaagcaa 222  Q
    | || |||||||||||||| |||||||| ||  |  |||||||||||||||||||||||||||| |||||| ||||||| |||||||| |||||||||||    
T  10717022 gtcatagattaaacatcatgatcgatgtcgccactgcattacattatcttcaccaagaatgtgaacaattaatcattcattgtgatcttaagccaagcaa 10716923  T
Q  223 tgtccttcttgatgatg 239  Q
    |||||||||||||||||    
T  10716922 tgtccttcttgatgatg 10716906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 23 - 239
Target Start/End: Complemental strand, 10740881 - 10740665
Alignment:
Q  23 tttaaagctctagttttttattacatcaaaaatggaagcttagaacaatggttgcatcctgagtttttaaatgaagagcatccaaaaacgttagaccttg 122  Q
    ||||||||||| |||||| ||||||| ||||||||||||||||||||||||||||||| |||| ||||||||| ||| ||||||| ||| || |||||||    
T  10740881 tttaaagctcttgtttttgattacatgaaaaatggaagcttagaacaatggttgcatcttgagattttaaatgcagatcatccaagaacattggaccttg 10740782  T
Q  123 gccacagattaaacatcattatcgatgttgcttcaacattacattatcttcaccaagaatgtgagcaattagtcattcactgtgatctcaagccaagcaa 222  Q
    | || |||||||||||||| | |||||| ||  |  |||||||||||||||||||||||||||| ||||| ||| |||| |||||||| |||||||||||    
T  10740781 gtcatagattaaacatcatgaacgatgtcgccactgcattacattatcttcaccaagaatgtgaacaattggtccttcattgtgatctaaagccaagcaa 10740682  T
Q  223 tgtccttcttgatgatg 239  Q
    |||||||||||||||||    
T  10740681 tgtccttcttgatgatg 10740665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 4 - 232
Target Start/End: Complemental strand, 11048858 - 11048630
Alignment:
Q  4 agattacaaagttcaggagtttaaagctctagttttttattacatcaaaaatggaagcttagaacaatggttgcatcctgagtttttaaatgaagagcat 103  Q
    ||||||||||| | | || |||||||| ||||||||| ||||||| |||||||||||||||||||||||||| ||||||||| ||||||||  |||||||    
T  11048858 agattacaaaggtgaagaatttaaagcactagtttttgattacatgaaaaatggaagcttagaacaatggttacatcctgagattttaaattcagagcat 11048759  T
Q  104 ccaaaaacgttagaccttggccacagattaaacatcattatcgatgttgcttcaacattacattatcttcaccaagaatgtgagcaattagtcattcact 203  Q
    |||||||| || ||||||||  | || ||||||||||||||||||||||||||  ||||||||||||| || |||||||||||||||||  | ||||| |    
T  11048758 ccaaaaacattggaccttggtgataggttaaacatcattatcgatgttgcttctgcattacattatctgcatcaagaatgtgagcaattgattattcatt 11048659  T
Q  204 gtgatctcaagccaagcaatgtccttctt 232  Q
    ||||||| |||||||| ||||| ||||||    
T  11048658 gtgatctaaagccaagtaatgttcttctt 11048630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 4 - 239
Target Start/End: Original strand, 10611718 - 10611953
Alignment:
Q  4 agattacaaagttcaggagtttaaagctctagttttttattacatcaaaaatggaagcttagaacaatggttgcatcctgagtttttaaatgaagagcat 103  Q
    ||||||||||| ||| || |||||||| ||||||||| ||||||| ||||||||||||||||||||||||||||||||  || |||||||||||||||||    
T  10611718 agattacaaaggtcaagaatttaaagccctagtttttgattacatgaaaaatggaagcttagaacaatggttgcatcccaaggttttaaatgaagagcat 10611817  T
Q  104 ccaaaaacgttagaccttggccacagattaaacatcattatcgatgttgcttcaacattacattatcttcaccaagaatgtgagcaattagtcattcact 203  Q
     ||  ||| || |||||  | || ||||||||||||||||| ||||||| |||  ||||||||||||||||  | |||||||||||||| ||| |||| |    
T  10611818 acagcaacattggacctcagtcatagattaaacatcattatggatgttggttctgcattacattatcttcataatgaatgtgagcaattggtccttcatt 10611917  T
Q  204 gtgatctcaagccaagcaatgtccttcttgatgatg 239  Q
    ||||| | ||||||||||||||||| ||||||||||    
T  10611918 gtgatataaagccaagcaatgtcctacttgatgatg 10611953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 4 - 239
Target Start/End: Original strand, 10565035 - 10565270
Alignment:
Q  4 agattacaaagttcaggagtttaaagctctagttttttattacatcaaaaatggaagcttagaacaatggttgcatcctgagtttttaaatgaagagcat 103  Q
    ||||||||||| ||| || ||||||||||| |||||| | ||||| ||||||||||||||||| |||||||||||||||||| ||||||||| ||| |      
T  10565035 agattacaaaggtcaagaatttaaagctctggtttttgagtacatgaaaaatggaagcttagatcaatggttgcatcctgagattttaaatgcagaaccc 10565134  T
Q  104 ccaaaaacgttagaccttggccacagattaaacatcattatcgatgttgcttcaacattacattatcttcaccaagaatgtgagcaattagtcattcact 203  Q
    |||| ||| || ||| |||  || |||||| |||| |||||||||||||||||  ||||||||||||||||   |||||||||  |||| |||||||| |    
T  10565135 ccaacaacattggactttgctcatagattatacattattatcgatgttgcttctgcattacattatcttcatagagaatgtgaagaattggtcattcatt 10565234  T
Q  204 gtgatctcaagccaagcaatgtccttcttgatgatg 239  Q
    ||||||| |||||||||||| |||||||||| ||||    
T  10565235 gtgatctaaagccaagcaatatccttcttgacgatg 10565270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 6 - 221
Target Start/End: Original strand, 10581014 - 10581228
Alignment:
Q  6 attacaaagttcaggagtttaaagctctagttttttattacatcaaaaatggaagcttagaacaatggttgcatcctgagtttttaaatgaagagcatcc 105  Q
    |||||||||  || || ||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||| || ||| || || ||| | ||     
T  10581014 attacaaaggccaagaatttaaagctttagttttttattacatgaaaaatggaagcttagaacaatggttgcatcctcagattt-aagtgcagaacctct 10581112  T
Q  106 aaaaacgttagaccttggccacagattaaacatcattatcgatgttgcttcaacattacattatcttcaccaagaatgtgagcaattagtcattcactgt 205  Q
    || ||| ||  ||||||| || ||||||||||||||||| |||||||||||  |||||||||||||||| | ||||||||||||||| ||| |||  |||    
T  10581113 aacaacattgaaccttggtcatagattaaacatcattatggatgttgcttctgcattacattatcttcatcgagaatgtgagcaattggtccttcgttgt 10581212  T
Q  206 gatctcaagccaagca 221  Q
    ||||| ||||||||||    
T  10581213 gatctaaagccaagca 10581228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 5 - 239
Target Start/End: Complemental strand, 10763333 - 10763099
Alignment:
Q  5 gattacaaagttcaggagtttaaagctctagttttttattacatcaaaaatggaagcttagaacaatggttgcatcctgagtttttaaatgaagagcatc 104  Q
    ||||| |||| ||| || ||||||||||| |||||| ||||||| ||||||||||||||||||| |||| |||| |||  |  |||||||| ||||  ||    
T  10763333 gattataaaggtcaagaatttaaagctctggtttttgattacatgaaaaatggaagcttagaacgatggctgcaccctaggaatttaaatgcagagactc 10763234  T
Q  105 caaaaacgttagaccttggccacagattaaacatcattatcgatgttgcttcaacattacattatcttcaccaagaatgtgagcaattagtcattcactg 204  Q
    ||| ||| || || ||||  || ||| | || |||||||| |||||||||||  |||||||||||||||| | ||||||||||||||| ||| |||| ||    
T  10763233 caacaacattggatcttgatcaaagactgaatatcattattgatgttgcttctgcattacattatcttcatcgagaatgtgagcaattggtccttcattg 10763134  T
Q  205 tgatctcaagccaagcaatgtccttcttgatgatg 239  Q
    |||||| ||||||||||||||||||||||||||||    
T  10763133 tgatctaaagccaagcaatgtccttcttgatgatg 10763099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 5 - 237
Target Start/End: Original strand, 10558911 - 10559143
Alignment:
Q  5 gattacaaagttcaggagtttaaagctctagttttttattacatcaaaaatggaagcttagaacaatggttgcatcctgagtttttaaatgaagagcatc 104  Q
    |||||||||| |||||| || ||||||||||||||| | ||||| |||||||||||||||||| | ||||||||| |   | |  | |||| |||||| |    
T  10558911 gattacaaaggtcaggaattcaaagctctagtttttgaatacatgaaaaatggaagcttagaaaactggttgcattcaaggatgatgaatgtagagcaac 10559010  T
Q  105 caaaaacgttagaccttggccacagattaaacatcattatcgatgttgcttcaacattacattatcttcaccaagaatgtgagcaattagtcattcactg 204  Q
    ||| | | || || |||   || ||| | || |||||||| |||||||||||  |||||||||||||||| | ||||||||||||||| ||| |||| ||    
T  10559011 caagagcattggatcttaatcaaagactgaatatcattattgatgttgcttctgcattacattatcttcatcgagaatgtgagcaattggtccttcattg 10559110  T
Q  205 tgatctcaagccaagcaatgtccttcttgatga 237  Q
    |||||| |||||||||||||||||| |||||||    
T  10559111 tgatctaaagccaagcaatgtccttattgatga 10559143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 5 - 239
Target Start/End: Complemental strand, 10588630 - 10588396
Alignment:
Q  5 gattacaaagttcaggagtttaaagctctagttttttattacatcaaaaatggaagcttagaacaatggttgcatcctgagtttttaaatgaagagcatc 104  Q
    ||||| |||| ||| || ||||||||| |||||||| ||||||| ||||||||||| |||||||||||| | |||||   |  | | |||  ||||||||    
T  10588630 gattataaaggtcaagaatttaaagctttagtttttgattacatgaaaaatggaagtttagaacaatggcttcatccatggaatgtgaattcagagcatc 10588531  T
Q  105 caaaaacgttagaccttggccacagattaaacatcattatcgatgttgcttcaacattacattatcttcaccaagaatgtgagcaattagtcattcactg 204  Q
    ||| |||||| |||||||  || |||||||| |||| ||||||| |||||||  || ||||||||||||| || |||||||||||  | ||| |||| ||    
T  10588530 caagaacgttggaccttgttcatagattaaatatcactatcgatattgcttctgcactacattatcttcatcatgaatgtgagcaggtggtccttcattg 10588431  T
Q  205 tgatctcaagccaagcaatgtccttcttgatgatg 239  Q
    |||| | ||||||||||| ||||||||||| ||||    
T  10588430 tgatataaagccaagcaacgtccttcttgacgatg 10588396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 26 - 234
Target Start/End: Complemental strand, 19606044 - 19605836
Alignment:
Q  26 aaagctctagttttttattacatcaaaaatggaagcttagaacaatggttgcatcctgagtttttaaatgaagagcatccaaaaacgttagaccttggcc 125  Q
    ||||||||||||||| | ||||| | |||||||||||||||||||||||||||||| | |    | |||| ||| ||||||| ||| ||  |  |||  |    
T  19606044 aaagctctagtttttgagtacatgagaaatggaagcttagaacaatggttgcatcccgggacaatgaatgcagatcatccaagaacattgaagtttgagc 19605945  T
Q  126 acagattaaacatcattatcgatgttgcttcaacattacattatcttcaccaagaatgtgagcaattagtcattcactgtgatctcaagccaagcaatgt 225  Q
    | |||||||| ||| || |||||||| ||||  |||||||||| ||||| || |||||||||||||| ||| |||| |||||||| ||||||||||||||    
T  19605944 aaagattaaatatccttgtcgatgtttcttctgcattacattaccttcatcatgaatgtgagcaattggtccttcattgtgatctaaagccaagcaatgt 19605845  T
Q  226 ccttcttga 234  Q
    |||| ||||    
T  19605844 ccttattga 19605836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 160 - 237
Target Start/End: Complemental strand, 10652247 - 10652170
Alignment:
Q  160 attacattatcttcaccaagaatgtgagcaattagtcattcactgtgatctcaagccaagcaatgtccttcttgatga 237  Q
    ||||||||| ||||| || ||||||||||||   |||||||| |||||||| |||||||| |||||||||||||||||    
T  10652247 attacattaccttcatcatgaatgtgagcaagcggtcattcattgtgatctaaagccaagtaatgtccttcttgatga 10652170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 160 - 239
Target Start/End: Original strand, 7193169 - 7193248
Alignment:
Q  160 attacattatcttcaccaagaatgtgagcaattagtcattcactgtgatctcaagccaagcaatgtccttcttgatgatg 239  Q
    ||||||||| ||||| |  |||||||||||||   ||||||| |||||||| ||||||||||||||||||||||| ||||    
T  7193169 attacattaccttcatcttgaatgtgagcaatcgatcattcattgtgatctaaagccaagcaatgtccttcttgacgatg 7193248  T

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Target: chr5; HSP #16
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 160 - 239
Target Start/End: Complemental strand, 10660130 - 10660051
Alignment:
Q  160 attacattatcttcaccaagaatgtgagcaattagtcattcactgtgatctcaagccaagcaatgtccttcttgatgatg 239  Q
    ||||||||| ||||| || ||||||||||||   |||||||| |||||||| |||||||| |||||||||||||| ||||    
T  10660130 attacattaccttcatcacgaatgtgagcaagcggtcattcattgtgatctaaagccaagtaatgtccttcttgacgatg 10660051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 23 - 73
Target Start/End: Complemental strand, 9836510 - 9836460
Alignment:
Q  23 tttaaagctctagttttttattacatcaaaaatggaagcttagaacaatgg 73  Q
    ||||||||| |||||||| ||||||| ||||||||||||||||||||||||    
T  9836510 tttaaagctttagtttttgattacatgaaaaatggaagcttagaacaatgg 9836460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 150 - 238
Target Start/End: Complemental strand, 9836383 - 9836295
Alignment:
Q  150 ttgcttcaacattacattatcttcaccaagaatgtgagcaattagtcattcactgtgatctcaagccaagcaatgtccttcttgatgat 238  Q
    |||||||  ||||||||||||||||    |||||||||||| | |||||||| |||||| |||||||||||||  ||||||| ||||||    
T  9836383 ttgcttctgcattacattatcttcattgtgaatgtgagcaagtggtcattcattgtgatatcaagccaagcaacatccttctcgatgat 9836295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 26 - 73
Target Start/End: Complemental strand, 9850879 - 9850832
Alignment:
Q  26 aaagctctagttttttattacatcaaaaatggaagcttagaacaatgg 73  Q
    ||||||||||||||||| ||||| | ||||||||||||||||||||||    
T  9850879 aaagctctagttttttagtacatgataaatggaagcttagaacaatgg 9850832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 82
Target Start/End: Original strand, 7193013 - 7193091
Alignment:
Q  4 agattacaaagttcaggagtttaaagctctagttttttattacatcaaaaatggaagcttagaacaatggttgcatcct 82  Q
    ||||||||||| ||| || ||||||||| |||| ||| | ||||| || || |||||||||||||||||| | ||||||    
T  7193013 agattacaaaggtcaagaatttaaagctttagtctttgaatacatgaacaacggaagcttagaacaatggctacatcct 7193091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 5 - 81
Target Start/End: Original strand, 9825109 - 9825186
Alignment:
Q  5 gattacaaagttcaggagtttaaagctctagttttttattacatcaaaaatgg-aagcttagaacaatggttgcatcc 81  Q
    ||||||||||  || || || ||||||||||||||| | |||||  ||||||| ||||||||||||||||||| ||||    
T  9825109 gattacaaagggcaagaattcaaagctctagtttttgagtacatgcaaaatgggaagcttagaacaatggttgaatcc 9825186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 4 - 73
Target Start/End: Complemental strand, 10660286 - 10660217
Alignment:
Q  4 agattacaaagttcaggagtttaaagctctagttttttattacatcaaaaatggaagcttagaacaatgg 73  Q
    ||||||||||| ||| |||||||| ||| |||| ||| | ||||| || ||||||||| |||||||||||    
T  10660286 agattacaaaggtcaagagtttaaggctttagtgtttgaatacatgaacaatggaagcctagaacaatgg 10660217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 198 - 239
Target Start/End: Original strand, 35755060 - 35755101
Alignment:
Q  198 ttcactgtgatctcaagccaagcaatgtccttcttgatgatg 239  Q
    ||||||||||| | |||||||||||||| |||||||||||||    
T  35755060 ttcactgtgatattaagccaagcaatgttcttcttgatgatg 35755101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 114; Significance: 6e-58; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 6 - 239
Target Start/End: Original strand, 12899580 - 12899813
Alignment:
Q  6 attacaaagttcaggagtttaaagctctagttttttattacatcaaaaatggaagcttagaacaatggttgcatcctgagtttttaaatgaagagcatcc 105  Q
    ||||||||| ||| || |||||||||||||||||| | ||||| |||||||||||||||||||||||||| ||||| |||  ||| |||| | | | |||    
T  12899580 attacaaaggtcaagaatttaaagctctagtttttgaatacatgaaaaatggaagcttagaacaatggttacatcccgagactttgaatgcaaatcctcc 12899679  T
Q  106 aaaaacgttagaccttggccacagattaaacatcattatcgatgttgcttcaacattacattatcttcaccaagaatgtgagcaattagtcattcactgt 205  Q
    || ||| ||  ||||||| || |||||||||||||| ||||||||||||||  |||||||||||||||| | ||||||||||||||||||| |||| |||    
T  12899680 aacaacattgaaccttggtcatagattaaacatcatcatcgatgttgcttctgcattacattatcttcatcgagaatgtgagcaattagtctttcattgt 12899779  T
Q  206 gatctcaagccaagcaatgtccttcttgatgatg 239  Q
    ||| | ||||||||||||||||||||||||||||    
T  12899780 gatataaagccaagcaatgtccttcttgatgatg 12899813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 23 - 239
Target Start/End: Original strand, 12948671 - 12948887
Alignment:
Q  23 tttaaagctctagttttttattacatcaaaaatggaagcttagaacaatggttgcatcctgagtttttaaatgaagagcatccaaaaacgttagaccttg 122  Q
    |||||||||||||||||| | ||||| |||||||||||||||||||| ||||| |||||||||  ||| |||| | | | ||||| ||| ||  |||||     
T  12948671 tttaaagctctagtttttgaatacatgaaaaatggaagcttagaacagtggttacatcctgagactttgaatgcaaatcctccaacaacattgaaccttc 12948770  T
Q  123 gccacagattaaacatcattatcgatgttgcttcaacattacattatcttcaccaagaatgtgagcaattagtcattcactgtgatctcaagccaagcaa 222  Q
    | |  |||||||||||||||||||||||||||||  |||||||||||||||| | | ||||||||||||||||| |||| |||||||| || ||||||||    
T  12948771 gtcgtagattaaacatcattatcgatgttgcttctgcattacattatcttcatcgataatgtgagcaattagtccttcattgtgatctaaaaccaagcaa 12948870  T
Q  223 tgtccttcttgatgatg 239  Q
    |||||||||||||||||    
T  12948871 tgtccttcttgatgatg 12948887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 6 - 236
Target Start/End: Original strand, 12958088 - 12958318
Alignment:
Q  6 attacaaagttcaggagtttaaagctctagttttttattacatcaaaaatggaagcttagaacaatggttgcatcctgagtttttaaatgaagag-catc 104  Q
    ||||||||| ||| || |||||||||||||||||| | |||||  ||||||||||||||||||| ||||| |||||| |  |||| ||||  ||| | ||    
T  12958088 attacaaaggtcaagaatttaaagctctagtttttgaatacatggaaaatggaagcttagaacagtggttacatcctcaaattttgaatgc-gagtcctc 12958186  T
Q  105 caaaaacgttagaccttggccacagattaaacatcattatcgatgttgcttcaacattacattatcttcaccaagaatgtgagcaattagtcattcactg 204  Q
    ||| ||| ||  ||||||| || |||||||||||||| ||||||||||||||  |||||||||||||||| | |||||||||||| ||| || |||||||    
T  12958187 caacaacattgaaccttggtcatagattaaacatcatcatcgatgttgcttctgcattacattatcttcatcgagaatgtgagcagttaatccttcactg 12958286  T
Q  205 tgatctcaagccaagcaatgtccttcttgatg 236  Q
    |||||| |||||||||||||||||||||||||    
T  12958287 tgatctaaagccaagcaatgtccttcttgatg 12958318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 6 - 239
Target Start/End: Original strand, 12907200 - 12907433
Alignment:
Q  6 attacaaagttcaggagtttaaagctctagttttttattacatcaaaaatggaagcttagaacaatggttgcatcctgagtttttaaatgaagagcatcc 105  Q
    ||||||||| ||| || |||||||||||||||||| | ||||| |||||||||||||||||||| ||||| ||||||||   ||| |||| | | | |||    
T  12907200 attacaaaggtcaagaatttaaagctctagtttttgaatacatgaaaaatggaagcttagaacagtggttacatcctgaaactttgaatgcaaatcctcc 12907299  T
Q  106 aaaaacgttagaccttggccacagattaaacatcattatcgatgttgcttcaacattacattatcttcaccaagaatgtgagcaattagtcattcactgt 205  Q
    || ||| ||  ||||||| |  |||||||||||||| ||||||||||||||  |||||||||||||||| | |||||||||||| ||| || | || |||    
T  12907300 aacaacattgaaccttggtcttagattaaacatcatcatcgatgttgcttctgcattacattatcttcatcgagaatgtgagcagttaatcctccattgt 12907399  T
Q  206 gatctcaagccaagcaatgtccttcttgatgatg 239  Q
    ||||| || |||||||||||||||||||||||||    
T  12907400 gatctaaaaccaagcaatgtccttcttgatgatg 12907433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 6 - 239
Target Start/End: Original strand, 12932289 - 12932522
Alignment:
Q  6 attacaaagttcaggagtttaaagctctagttttttattacatcaaaaatggaagcttagaacaatggttgcatcctgagtttttaaatgaagagcatcc 105  Q
    ||||||||| ||| || |||||||| ||||||||| | ||||| |||||||||||||||||||| ||||| |||||||||  ||| |||| | | | |||    
T  12932289 attacaaaggtcaagaatttaaagcactagtttttgaatacatgaaaaatggaagcttagaacagtggttacatcctgagactttgaatgcaaatcctcc 12932388  T
Q  106 aaaaacgttagaccttggccacagattaaacatcattatcgatgttgcttcaacattacattatcttcaccaagaatgtgagcaattagtcattcactgt 205  Q
    || ||| ||  ||||||| || |||||||||||||| ||||||||||||||  |||| ||||| ||||| | |||||||||||| ||| || |||| |||    
T  12932389 aacaacattgaaccttggtcatagattaaacatcatcatcgatgttgcttctgcattgcattaccttcatcgagaatgtgagcagttaatccttcattgt 12932488  T
Q  206 gatctcaagccaagcaatgtccttcttgatgatg 239  Q
    ||||| || |||||||||||||||||||||||||    
T  12932489 gatctaaaaccaagcaatgtccttcttgatgatg 12932522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0692 (Bit Score: 106; Significance: 4e-53; HSPs: 1)
Name: scaffold0692
Description:

Target: scaffold0692; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 6 - 239
Target Start/End: Original strand, 7303 - 7536
Alignment:
Q  6 attacaaagttcaggagtttaaagctctagttttttattacatcaaaaatggaagcttagaacaatggttgcatcctgagtttttaaatgaagagcatcc 105  Q
    ||||||||| ||| || |||||||||||||||||| | ||||| |||||||||||||||||||| ||||| |||||||||  ||| |||| | | | |||    
T  7303 attacaaaggtcaagaatttaaagctctagtttttgaatacatgaaaaatggaagcttagaacagtggttacatcctgagactttgaatgcaaatcctcc 7402  T
Q  106 aaaaacgttagaccttggccacagattaaacatcattatcgatgttgcttcaacattacattatcttcaccaagaatgtgagcaattagtcattcactgt 205  Q
    || ||| ||  ||||||| || |||||||||||||| ||||||||||||||  |||||||||| ||||| | |||||||||||||||| |  |||| |||    
T  7403 aataacattgaaccttggtcatagattaaacatcatcatcgatgttgcttctgcattacattaacttcatcgagaatgtgagcaattaatacttcattgt 7502  T
Q  206 gatctcaagccaagcaatgtccttcttgatgatg 239  Q
    ||||| ||||||||||||||||||||||||||||    
T  7503 gatctaaagccaagcaatgtccttcttgatgatg 7536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 98; Significance: 2e-48; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 6 - 239
Target Start/End: Complemental strand, 17923602 - 17923369
Alignment:
Q  6 attacaaagttcaggagtttaaagctctagttttttattacatcaaaaatggaagcttagaacaatggttgcatcctgagtttttaaatgaagagcatcc 105  Q
    ||||||||| ||| || |||||||||||||||||| | ||||| |||||||||||||||||||| ||||| |||||||||  ||| |||| | | | |||    
T  17923602 attacaaaggtcaagaatttaaagctctagtttttgaatacatgaaaaatggaagcttagaacagtggttacatcctgagactttgaatgcaaatcctcc 17923503  T
Q  106 aaaaacgttagaccttggccacagattaaacatcattatcgatgttgcttcaacattacattatcttcaccaagaatgtgagcaattagtcattcactgt 205  Q
    || ||| ||  ||||||| || |||||||||||||| ||||||||||||||  |||| ||||| ||||| | |||||||||||| ||| || |||| |||    
T  17923502 aacaacattgaaccttggtcatagattaaacatcatcatcgatgttgcttctgcattgcattaccttcatcgagaatgtgagcagttaatccttcattgt 17923403  T
Q  206 gatctcaagccaagcaatgtccttcttgatgatg 239  Q
    ||||| || |||||||||||||||||||||||||    
T  17923402 gatctaaaaccaagcaatgtccttcttgatgatg 17923369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 131 - 238
Target Start/End: Complemental strand, 31467236 - 31467129
Alignment:
Q  131 ttaaacatcattatcgatgttgcttcaacattacattatcttcaccaagaatgtgagcaattagtcattcactgtgatctcaagccaagcaatgtccttc 230  Q
    ||||| || ||||| || ||||||||  |||| ||||||||||| || |||||| |||||   |||||||| |||||| | ||||| ||||| || ||||    
T  31467236 ttaaatattattattgacgttgcttcggcatttcattatcttcatcatgaatgtcagcaacctgtcattcattgtgatttaaagcctagcaacgttcttc 31467137  T
Q  231 ttgatgat 238  Q
    ||||||||    
T  31467136 ttgatgat 31467129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 198 - 239
Target Start/End: Original strand, 1153992 - 1154033
Alignment:
Q  198 ttcactgtgatctcaagccaagcaatgtccttcttgatgatg 239  Q
    ||||||||||| | |||||||||||||| |||||||||||||    
T  1153992 ttcactgtgatattaagccaagcaatgttcttcttgatgatg 1154033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 198 - 239
Target Start/End: Complemental strand, 29623072 - 29623031
Alignment:
Q  198 ttcactgtgatctcaagccaagcaatgtccttcttgatgatg 239  Q
    ||||||||||| | |||||||||||||| |||||||||||||    
T  29623072 ttcactgtgatgttaagccaagcaatgttcttcttgatgatg 29623031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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