View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6433_low_9 (Length: 240)
Name: NF6433_low_9
Description: NF6433
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6433_low_9 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 20 - 240
Target Start/End: Original strand, 3637912 - 3638132
Alignment:
| Q |
20 |
tgcacaccagttatcatgtttctgtaatatatgggttacatttttaactccaatataatggtgtctgttgttttcttcagctgcaaaccgccaaattctt |
119 |
Q |
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| T |
3637912 |
tgcacactagttatcatgtttctgtaatatatgggttacatttttaactccaatataatggtgtctgttgttttcttcagctgcaaaccgccaaattctt |
3638011 |
T |
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| Q |
120 |
gtatggttgtgctgttggtgcctcaatactaagagttgactggcttactgattgtcttacatctggaactattttactacctgaaaagtaagttgtgttc |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
3638012 |
gtatggttgtgctgttggtgcctcaatactaagagttgactggcttactgattgtcttgcatctggaactattttactacctgaaaagtaagttgtgttc |
3638111 |
T |
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| Q |
220 |
tcacttctcaacaaattgact |
240 |
Q |
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||||||||||||||||||||| |
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| T |
3638112 |
tcacttctcaacaaattgact |
3638132 |
T |
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