View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6434_high_1 (Length: 414)
Name: NF6434_high_1
Description: NF6434
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6434_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 307; Significance: 1e-173; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 75 - 397
Target Start/End: Complemental strand, 36842190 - 36841868
Alignment:
| Q |
75 |
aaggtatgataacacatgaaccggagattttggaaaaatatcagcaagaagttttctgtaacgtttgactggctgtcttgatcttgacctcaaagcagga |
174 |
Q |
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| T |
36842190 |
aaggtatgataacacatgaaccggggattttggaaaaatatcagcaagaagttttctgtaacatttgactggctgtcttgatcttgacctcaaagcagga |
36842091 |
T |
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| Q |
175 |
caagtaaacacacatgctctcacaagctgggaagatattccttgagacttatgtattgggttcaccgtggttctcattctctttttcactattttgtata |
274 |
Q |
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| T |
36842090 |
caagtaaacacacatgctctcacaagctgggaagatattccttgagacttatgtattgggttcactgtggttctcattctctttttcactattttgtata |
36841991 |
T |
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| Q |
275 |
tgtatatgtcttgtgttctttgttttttatcggttcttccgattgaagcttggtacttatttcggtttgttcactttctgcaagtgatcaacttatcagt |
374 |
Q |
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| T |
36841990 |
tgtatatgtattgtgttctttgttttttatcggttcttccgattgaagcttggtacttatttcggtttgttcactttctgcaagtgatcaacttatcagt |
36841891 |
T |
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| Q |
375 |
gcttttttgggtttagttattca |
397 |
Q |
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| T |
36841890 |
gcttttttgggtttagttattca |
36841868 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 75 - 221
Target Start/End: Original strand, 37513910 - 37514055
Alignment:
| Q |
75 |
aaggtatgataacacatgaaccggagattttggaaaaatatcagcaagaagttttctgtaacgtttgactggctgtcttgatcttgacctcaaagcagga |
174 |
Q |
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| T |
37513910 |
aaggtatgataacacacgaaccggggattttggaaagatatcagcaagaagttttctgtaacgtttgactggttgtcttgatcttgacctcaaagcagga |
37514009 |
T |
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| Q |
175 |
caagtaaacacacatgctctcacaagctgggaagatattccttgaga |
221 |
Q |
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| T |
37514010 |
c-agcaaacacacatgctctcacaagctgggaagatcttccttgaga |
37514055 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 8 - 74
Target Start/End: Complemental strand, 36842297 - 36842231
Alignment:
| Q |
8 |
cagcacagacatttcaaatcgaatgcatgtccaatgtgcgacacacgtggttacattcaattactcc |
74 |
Q |
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| T |
36842297 |
cagcacaaacatttcaaatcgaatgcatgtccaatgtgcgacacacgtggttacattcaattactcc |
36842231 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 8 - 74
Target Start/End: Original strand, 37513803 - 37513869
Alignment:
| Q |
8 |
cagcacagacatttcaaatcgaatgcatgtccaatgtgcgacacacgtggttacattcaattactcc |
74 |
Q |
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| T |
37513803 |
cagcacaaacatttcaaatcgaatgcatgtccgatatccgacacacaaggttacattcaattactcc |
37513869 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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