View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6434_high_4 (Length: 330)
Name: NF6434_high_4
Description: NF6434
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6434_high_4 |
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Alignment Details
Target: chr1 (Bit Score: 231; Significance: 1e-127; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 45 - 323
Target Start/End: Complemental strand, 31526062 - 31525778
Alignment:
| Q |
45 |
acattcctaaatacacaaaatgaattaagaacaagctacaattgaataaaatgaagtagcacgtttgcattcaaaagtactaaacaaattacatggttca |
144 |
Q |
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| T |
31526062 |
acattcctaaatacacaaaatgaattaagaacaagctacaattgaataaaatgaagtagcacgtttgcattcaaaagtactaaacaaattacatggttca |
31525963 |
T |
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| Q |
145 |
agcagttacatatagggtcatctacatgacctaaccctagaaaattagctacccatgctatcctaaacac-aaataaaagagtatgtaaataaattcatg |
243 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| ||||||||||||||||||| |
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| T |
31525962 |
agcagttacatatagggttatctacatgacctaaccctagaaaattagctacccatgctatcctaaacacaaaaaaaaagggtatgtaaataaattcatg |
31525863 |
T |
|
| Q |
244 |
aaagatgagcatcgttggtcaattcctcatctaggatgcctt------ctggtagccttcctatattgcaatttcacattcttctc |
323 |
Q |
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| T |
31525862 |
aaagatgagcatcgttggtcaattcctcatctaggatgccttcgatcgctagtagccttcctatattgcaattt-acattcttctc |
31525778 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 133 - 245
Target Start/End: Original strand, 35411342 - 35411452
Alignment:
| Q |
133 |
ttacatggttcaagcagttacatatagggtcatctacatgacctaaccctagaaaattagctacccatgctatcctaaacacaaataaaagagtatgtaa |
232 |
Q |
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|||||||||||||||||||| | | ||||||||||||||||||||| |||||||||| || ||| ||| ||| || |||| ||||||||| ||||||| |
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| T |
35411342 |
ttacatggttcaagcagttatagagagggtcatctacatgacctaa-cctagaaaatcagttacttatgttat-ctgaacataaataaaagtatatgtaa |
35411439 |
T |
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| Q |
233 |
ataaattcatgaa |
245 |
Q |
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| |||| |||||| |
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| T |
35411440 |
agaaatacatgaa |
35411452 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 134 - 180
Target Start/End: Original strand, 15294247 - 15294293
Alignment:
| Q |
134 |
tacatggttcaagcagttacatatagggtcatctacatgacctaacc |
180 |
Q |
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| T |
15294247 |
tacatggttaaagtagttacaaagagggtcatctacatgacctaacc |
15294293 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 16 - 44
Target Start/End: Complemental strand, 31526105 - 31526077
Alignment:
| Q |
16 |
tgaggaacacttatttggtcaatgagatt |
44 |
Q |
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| T |
31526105 |
tgaggaacacttatttggtcaatgagatt |
31526077 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 113 - 179
Target Start/End: Original strand, 33146186 - 33146249
Alignment:
| Q |
113 |
attcaaaagtactaaacaaattacatggttcaagcagttacatatagggtcatctacatgacctaac |
179 |
Q |
| |
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|||||||||||||||| | |||||||| |||||| ||||||| | |||||| ||||||||||||| |
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| T |
33146186 |
attcaaaagtactaaaaatattacatgattcaagtagttaca---aaggtcatttacatgacctaac |
33146249 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 133 - 233
Target Start/End: Complemental strand, 13962934 - 13962837
Alignment:
| Q |
133 |
ttacatggttcaagcagttacatatagggtcatctacatgacctaaccctagaaaattagctacccatgctatcctaaacacaaataaaagagtatgtaa |
232 |
Q |
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|||||||||||||||||| ||| | | ||||||||||||||||||| ||||| |||||||||| |||||||| ||||||| ||| |||||| ||||||| |
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| T |
13962934 |
ttacatggttcaagcagtcacaaagaaggtcatctacatgacctaa-cctaggaaattagcta-tcatgctat-ctaaacataaacaaaagaatatgtaa |
13962838 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 109 - 193
Target Start/End: Complemental strand, 15175745 - 15175662
Alignment:
| Q |
109 |
ttgcattcaaaagtactaaacaaattacatggttcaagcagttacatatagggtcatctacatgacctaaccctagaaaattagc |
193 |
Q |
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| T |
15175745 |
ttgcattcaaaagtactcaacatattacatggttcaagtagctatagagaaggtcatctacataacataa-cctagaaaactagc |
15175662 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 132 - 272
Target Start/End: Complemental strand, 3004320 - 3004180
Alignment:
| Q |
132 |
attacatggttcaagcagttacatatagggtcatctacatgacctaaccctagaaaattagctacccatgctatcctaaacacaaataaaagagtatgta |
231 |
Q |
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||||||| ||||| | ||||||| | ||| | |||||||||| |||||||||| | ||| |||| |||| ||| |||||| ||||||||| |||| | |
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| T |
3004320 |
attacatagttcatgtagttacaaagaggtttatctacatgatctaaccctaggagtttaactactcatgttattttaaacaaaaataaaagtatatgaa |
3004221 |
T |
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| Q |
232 |
aataaattcatgaaagatgagcatcgttggtcaattcctca |
272 |
Q |
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| T |
3004220 |
aagaaatacatgaatcataatcatcgttggtcgattcctca |
3004180 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 131 - 201
Target Start/End: Original strand, 23384369 - 23384438
Alignment:
| Q |
131 |
aattacatggttcaagcagttacatatagggtcatctacatgacctaaccctagaaaattagctacccatg |
201 |
Q |
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|||||||||||||||||| |||| | | ||||||||||||||||||| |||| |||| ||||||| |||| |
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| T |
23384369 |
aattacatggttcaagcaactacaaaaaaggtcatctacatgacctaa-cctataaaactagctacacatg |
23384438 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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