View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6434_low_2 (Length: 380)
Name: NF6434_low_2
Description: NF6434
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6434_low_2 |
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| [»] scaffold0236 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 327; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 7 - 368
Target Start/End: Complemental strand, 5570082 - 5569720
Alignment:
| Q |
7 |
cctcttctgtgcaagttaaaagtccaatcgagcacaataatagcgtggtacagataaagtatgagcatggtcaggtacagaatcagtatgttgcgggaca |
106 |
Q |
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| T |
5570082 |
cctcttctgtgcaagttaaaagtccaatcgagcacaataatagcgtggtacagataaagtatgagcatggtcaggtacagaatcagtatgttgcgggaca |
5569983 |
T |
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| Q |
107 |
caatcaggaggttgttcctgttgagggtgcagttcgaaattcagacttagccactgatgacagcaacacagtacgacatggagatggtccagtgcagcat |
206 |
Q |
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| T |
5569982 |
caatcaggaggttgttcctgctgagggtgcagttcgaaattcagacttagccactgatgacagcaacacagtacgacatggagatggtccagtgcagcat |
5569883 |
T |
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| Q |
207 |
attaatcctaacatacaacaggatatggacctttaacaaggaatccatgaatatgataagagggcaacaaaggttcctttcacaccagttctttcaaaga |
306 |
Q |
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| T |
5569882 |
attaatcctaacatacaacaggatatggacctttaacaaggaatctatgaatatttaaagagggcaacaaaggttcctttcacaccagttctttcaaaga |
5569783 |
T |
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| Q |
307 |
aacaaacactgtaattgaagcaagtccaggttctt-ggaagccgtcgtatcgaacccgttctg |
368 |
Q |
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| T |
5569782 |
aacaaatacagtaattgaagcaagtccaggttcttgggaagccgtcgtatcgaacccgttctg |
5569720 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0236 (Bit Score: 92; Significance: 1e-44; HSPs: 1)
Name: scaffold0236
Description:
Target: scaffold0236; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 64 - 311
Target Start/End: Original strand, 5720 - 5967
Alignment:
| Q |
64 |
agtatgagcatggtcaggtacagaatcagtatgttgcgggacacaatcaggaggttgttcctgttgagggtgcagttcgaaattcagacttagccactga |
163 |
Q |
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| T |
5720 |
agtatgatcatggccaggtataacatcggtatgttgcaggagaaaatcaagaggttgtccttgttgagcgtgaagttcgaaattcagacctagccactga |
5819 |
T |
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| Q |
164 |
tgacagcaacacagtacgacatggagatggtccagtgcagcatattaatcctaacatacaacaggatatggacctttaacaaggaatccatgaatatgat |
263 |
Q |
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| T |
5820 |
tgacaataacacaatacgacatggcgatggtctagtacagcatattaatcctaacatacaacatgatatggacctttggcaaagaatatgtgagtatgat |
5919 |
T |
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| Q |
264 |
aagagggcaacaaaggttcctttcacaccagttctttcaaagaaacaa |
311 |
Q |
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| T |
5920 |
aaaggaacagcggaggtttctttcactccagttctttcaaataaacaa |
5967 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 183 - 367
Target Start/End: Original strand, 2631089 - 2631277
Alignment:
| Q |
183 |
catggagatggtccagtgcagca---tattaatcctaacatacaacaggatatggacctttaacaaggaatccatgaatatgataagagggcaacaaagg |
279 |
Q |
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| T |
2631089 |
catggagatggtctagtgcagcaacatattcatcctaacttacaacaagatatggacctttggcatagaatccgtgagtatgataagagggcagcgtagg |
2631188 |
T |
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| Q |
280 |
ttcctttcacaccagttctttcaaagaaacaaacactgtaattgaagcaagtccaggttctt-ggaagccgtcgtatcgaacccgttct |
367 |
Q |
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| T |
2631189 |
tgtctttcacactagttctttcgaagaaacataaacataaattgaaacaagcccaagtgcttcggaagtcgccgtatctaacccgttct |
2631277 |
T |
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